Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 7.5e-62 240.4 122 100.0
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 5.4e-52 207.6 121 83.5
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 1.2e-51 206.5 120 85.0
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 3.5e-51 204.9 118 83.9
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 7.8e-51 203.8 118 83.9
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.0e-50 203.4 118 83.1
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 1.0e-50 203.4 118 84.7
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 2.3e-50 202.2 118 83.9
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 2.3e-50 202.2 118 83.1
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 1.5e-49 199.5 120 80.8
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 2.5e-49 198.7 117 82.9
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 5.6e-49 197.6 120 80.0
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 5.6e-49 197.6 118 80.5
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 7.3e-49 197.2 119 80.7
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 1.2e-48 196.4 119 79.0
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 1.2e-48 196.4 120 81.7
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 1.2e-48 196.4 118 81.4
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 1.2e-48 196.4 115 82.6
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 1.2e-48 196.4 118 80.5
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 1.6e-48 196.1 120 79.2
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 1.6e-48 196.1 120 80.0
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 2.1e-48 195.7 120 78.3
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 2.1e-48 195.7 120 78.3
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 2.1e-48 195.7 120 78.3
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 2.8e-48 195.3 119 79.8
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 6.2e-48 194.1 120 79.2
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 8.0e-48 193.7 119 76.5
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 1.1e-47 193.4 118 79.7
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 1.4e-47 193.0 118 78.8
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 2.3e-47 192.2 131 74.8
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 3.1e-47 191.8 118 78.8
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 3.1e-47 191.8 114 81.6
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 3.1e-47 191.8 116 79.3
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 8.9e-47 190.3 124 77.4
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 1.2e-46 189.9 119 78.2
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 1.2e-46 189.9 118 81.4
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 1.2e-46 189.9 118 78.0
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.5e-46 189.5 132 73.5
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.5e-46 189.5 132 73.5
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 2.0e-46 189.1 118 75.4
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 2.6e-46 188.7 114 79.8
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 2.6e-46 188.7 119 77.3
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 4.4e-46 188.0 113 79.6
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 5.8e-46 187.6 127 74.8
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 5.8e-46 187.6 119 79.8
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 1.3e-45 186.4 119 76.5
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 2.2e-45 185.7 114 78.1
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 2.9e-45 185.3 114 78.1
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 2.9e-45 185.3 126 75.4
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 3.7e-45 184.9 119 75.6
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 4.9e-45 184.5 119 74.8
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 6.4e-45 184.1 118 78.8
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 6.4e-45 184.1 143 66.4
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 6.4e-45 184.1 143 66.4
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 8.3e-45 183.7 119 75.6
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 1.1e-44 183.3 121 75.2
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.1e-44 183.3 153 64.1
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 1.4e-44 183.0 116 79.3
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 1.9e-44 182.6 119 76.5
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 2.4e-44 182.2 119 77.3
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 2.4e-44 182.2 119 72.3
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 7.1e-44 180.6 120 74.2
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 9.2e-44 180.3 111 79.3
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 9.2e-44 180.3 131 71.0
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 9.2e-44 180.3 114 76.3
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 1.6e-43 179.5 120 74.2
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 4.6e-43 177.9 118 75.4
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 6.0e-43 177.6 113 75.2
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 6.0e-43 177.6 111 78.4
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 6.0e-43 177.6 119 75.6
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 1.0e-42 176.8 111 76.6
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 1.3e-42 176.4 124 71.8
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 1.7e-42 176.0 118 75.4
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 6.6e-42 174.1 117 72.6
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 8.6e-42 173.7 116 74.1
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 8.6e-42 173.7 121 72.7
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 1.1e-41 173.3 125 71.2
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 1.9e-41 172.6 121 71.9
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.9e-41 172.6 173 56.6
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 1.9e-41 172.6 121 71.9
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 3.3e-41 171.8 114 72.8
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 4.3e-41 171.4 121 71.1
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 9.5e-41 170.2 120 70.8
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 8.1e-40 167.2 115 72.2
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 3.4e-38 161.8 118 65.3
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 3.4e-38 161.8 107 74.8
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 2.9e-37 158.7 120 70.8
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.7e-37 158.3 117 70.9
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 3.7e-37 158.3 114 65.8
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 2.4e-36 155.6 114 66.7
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.2e-36 155.2 117 70.1
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 7.1e-36 154.1 117 70.1
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 9.2e-36 153.7 115 67.0
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 1.2e-35 153.3 124 66.9
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 2.1e-35 152.5 116 63.8
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 4.6e-35 151.4 132 62.9
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 7.8e-35 150.6 118 65.3
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 1.0e-34 150.2 113 61.9
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.9e-34 148.3 110 71.8
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 8.6e-34 147.1 116 68.1
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 4.3e-33 144.8 118 61.9
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 3.6e-32 141.7 159 51.6
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 3.6e-32 141.7 120 60.0
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 1.4e-31 139.8 112 66.1
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 2.4e-31 139.0 88 72.7
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 5.2e-31 137.9 112 65.2
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 5.2e-31 137.9 126 54.8
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 2.6e-30 135.6 118 59.3
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 3.4e-30 135.2 86 70.9
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 5.8e-30 134.4 106 64.2
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 5.8e-30 134.4 118 59.3
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 4.9e-29 131.3 116 60.3
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 4.9e-29 131.3 113 58.4
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 8.4e-29 130.6 98 66.3
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.4e-28 129.8 173 46.2
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 2.4e-28 129.0 83 71.1
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 5.1e-26 121.3 107 57.9
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 5.1e-26 121.3 101 58.4
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.5e-25 119.8 82 68.3
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 1.3e-24 116.7 68 77.9
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.4e-23 113.2 92 65.2
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 2.4e-23 112.5 67 76.1
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 5.3e-23 111.3 68 73.5
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 5.1e-18 94.7 83 57.8
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 3.6e-16 88.6 62 69.4
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 1.8e-15 86.3 83 61.4
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 6.4e-13 77.8 98 41.8
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 4.6e-11 71.6 49 65.3
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 3.9e-10 68.6 66 56.1
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 1.9e-09 66.2 50 70.0
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 2.1e-08 62.8 48 60.4


User provided reference genes

Program Settings