Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 8.5e-84 314.7 331 100.0
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 1.1e-67 261.2 325 93.8
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 4.2e-67 259.2 325 93.8
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 7.2e-67 258.5 321 93.5
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.4e-62 244.2 325 80.6
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.7e-61 240.0 370 68.1
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 3.5e-61 239.6 323 90.4
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 4.5e-61 239.2 310 93.5
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 1.7e-60 237.3 327 83.5
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 6.5e-60 235.3 331 88.2
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 2.5e-59 233.4 324 88.6
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 3.6e-58 229.6 332 77.7
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 4.7e-58 229.2 349 65.6
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 1.0e-57 228.0 318 89.9
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.0e-57 226.1 328 88.7
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 5.2e-57 225.7 318 89.6
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 6.8e-57 225.3 331 87.6
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 8.8e-57 224.9 326 88.3
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 8.8e-57 224.9 326 88.3
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.5e-56 224.2 320 89.7
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.6e-56 223.4 325 88.9
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 4.4e-56 222.6 318 88.7
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 4.4e-56 222.6 318 89.6
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 5.7e-56 222.2 317 89.6
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 7.5e-56 221.9 339 74.6
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 7.5e-56 221.9 324 89.2
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 7.5e-56 221.9 332 86.4
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 9.8e-56 221.5 328 87.8
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.7e-55 220.7 326 86.2
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 1.7e-55 220.7 317 88.6
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.7e-55 220.7 325 88.3
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.7e-55 220.7 328 86.0
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.2e-55 220.3 321 88.8
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.2e-55 220.3 325 88.3
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 2.2e-55 220.3 316 85.1
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.8e-55 219.9 323 88.2
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 2.8e-55 219.9 326 87.1
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 2.8e-55 219.9 327 87.2
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 2.8e-55 219.9 317 89.3
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 3.7e-55 219.5 325 87.1
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 3.7e-55 219.5 326 87.7
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 6.3e-55 218.8 342 62.0
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 8.3e-55 218.4 324 88.6
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 8.3e-55 218.4 324 88.6
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 8.3e-55 218.4 323 87.3
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 8.3e-55 218.4 366 68.0
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 8.3e-55 218.4 316 89.9
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 8.3e-55 218.4 316 89.2
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 8.3e-55 218.4 328 85.7
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 8.3e-55 218.4 321 88.2
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 1.1e-54 218.0 323 87.3
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 1.1e-54 218.0 317 89.3
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 1.1e-54 218.0 317 89.3
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.1e-54 218.0 316 89.6
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.1e-54 218.0 326 87.1
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 1.1e-54 218.0 313 88.8
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.4e-54 217.6 323 87.6
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.4e-54 217.6 323 87.6
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.4e-54 217.6 319 88.1
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.4e-54 217.6 317 89.3
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 1.4e-54 217.6 328 85.7
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 1.4e-54 217.6 325 88.3
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.8e-54 217.2 319 88.4
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 1.8e-54 217.2 296 93.6
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 1.8e-54 217.2 325 88.3
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 1.8e-54 217.2 325 88.3
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 2.4e-54 216.9 324 87.7
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.4e-54 216.9 321 88.2
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 3.1e-54 216.5 323 87.6
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 3.1e-54 216.5 342 73.4
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 4.1e-54 216.1 318 88.1
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 4.1e-54 216.1 328 86.9
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 5.4e-54 215.7 321 88.2
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 5.4e-54 215.7 321 88.5
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 5.4e-54 215.7 318 88.7
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 7.0e-54 215.3 319 88.4
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 7.0e-54 215.3 326 86.5
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 9.2e-54 214.9 326 87.1
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 1.2e-53 214.5 323 87.0
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 1.2e-53 214.5 323 87.0
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 1.2e-53 214.5 323 87.6
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.2e-53 214.5 321 88.2
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 1.6e-53 214.2 323 86.7
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 1.6e-53 214.2 322 87.0
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.6e-53 214.2 326 86.8
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 2.0e-53 213.8 321 87.9
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 2.7e-53 213.4 326 86.5
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 2.7e-53 213.4 327 86.5
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 3.5e-53 213.0 324 88.3
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 3.5e-53 213.0 322 87.3
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.5e-53 213.0 322 88.2
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 5.9e-53 212.2 321 87.9
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 1.3e-52 211.1 325 87.4
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.7e-52 210.7 323 86.4
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.7e-52 210.7 328 85.7
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 2.9e-52 209.9 320 87.8
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 3.8e-52 209.5 333 83.5
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 5.0e-52 209.1 320 87.5
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 6.6e-52 208.8 328 85.1
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.6e-52 208.8 332 77.4
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 6.6e-52 208.8 317 87.7
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 8.6e-52 208.4 311 88.4
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.1e-51 208.0 324 86.1
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.5e-51 207.6 246 86.6
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 2.5e-51 206.8 311 89.1
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 2.5e-51 206.8 331 84.6
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.5e-51 206.8 318 85.8
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 5.6e-51 205.7 322 84.2
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.2e-50 204.5 320 86.9
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 2.8e-50 203.4 320 87.2
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 2.8e-50 203.4 297 90.9
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 4.7e-50 202.6 340 82.1
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 4.7e-50 202.6 320 84.4
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.8e-49 200.7 319 83.7
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.8e-49 200.7 319 83.7
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.8e-49 200.7 250 84.4
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.0e-49 199.9 318 85.5
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 4.0e-49 199.5 324 74.7
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.5e-48 197.6 320 72.2
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 1.5e-48 197.6 245 71.0
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.6e-48 196.8 340 82.6
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 4.4e-48 196.1 322 86.3
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.7e-47 194.1 321 83.8
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 3.7e-47 193.0 320 85.6
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 4.9e-47 192.6 340 75.0
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.8e-46 190.7 326 77.9
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.8e-46 190.7 326 77.9
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 4.1e-46 189.5 317 85.5
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 7.0e-46 188.7 305 56.7
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.6e-45 187.6 321 82.6
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 2.7e-45 186.8 321 84.7
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 3.5e-45 186.4 321 82.9
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 5.9e-45 185.7 332 82.8
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 5.9e-45 185.7 334 75.4
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 7.8e-45 185.3 306 87.6
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 3.9e-44 183.0 332 73.2
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 5.0e-44 182.6 319 85.0
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 6.6e-44 182.2 101 85.1
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 3.3e-43 179.9 329 81.8
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 1.2e-42 177.9 105 81.9
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.8e-41 174.1 222 90.1
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 8.9e-41 171.8 97 84.5
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 8.9e-41 171.8 97 84.5
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 1.2e-40 171.4 312 83.3
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 3.4e-40 169.9 92 84.8
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 5.8e-40 169.1 321 80.4
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 7.5e-40 168.7 94 81.9
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 1.7e-39 167.5 93 82.8
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.2e-39 167.2 89 85.4
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.7e-39 166.4 95 84.2
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 4.9e-39 166.0 100 81.0
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.4e-38 164.5 96 82.3
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 1.9e-38 164.1 242 80.2
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.6e-37 161.0 80 93.8
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 4.6e-37 159.5 96 81.2
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 2.3e-36 157.1 328 78.0
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 3.3e-35 153.3 237 78.5
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 3.1e-33 146.7 304 79.6
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 9.8e-32 141.7 276 83.3
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 6.4e-31 139.0 100 62.0
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 3.4e-24 116.7 73 76.7
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.1e-22 111.7 72 75.0
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.9e-22 110.9 97 60.8
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 3.0e-20 103.6 249 71.9
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.5e-19 100.5 78 60.3
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.2e-18 98.2 258 84.9
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.1e-18 97.4 118 89.8
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.1e-17 95.1 89 52.8
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 3.1e-17 93.6 50 80.0
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 5.2e-17 92.8 120 55.8
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.2e-13 81.6 79 51.9
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 3.5e-13 80.1 40 95.0
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 3.5e-13 80.1 43 88.4
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 2.3e-12 77.4 44 86.4
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 3.0e-12 77.0 40 90.0
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 3.0e-12 77.0 39 84.6
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 6.6e-12 75.9 49 77.6
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 1.9e-11 74.3 44 84.1
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 3.3e-11 73.6 47 74.5
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 3.8e-07 60.1 55 56.4
Os03g0436600 Oryza sativa ssp. japonica HOM05D001169 ORTHO05D001002 1.4e-06 58.2 118 35.6
Sed0024755 Sechium edule HOM05D000517 ORTHO05D003374 3.2e-06 57.0 99 36.4
ClCG01G011560 Citrullus lanatus HOM05D000517 ORTHO05D003374 7.1e-06 55.8 100 36.0
SEGI_29790 Sequoiadendron giganteum HOM05D000106 ORTHO05D008911 9.3e-06 55.5 88 38.6


User provided reference genes

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