Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0002270 Simmondsia chinensis HOM05D002318 ORTHO05D008744 2.1e-191 672.2 338 100.0
AUR62043182 Chenopodium quinoa HOM05D002318 ORTHO05D008744 5.5e-139 498.0 338 74.3
Haze_11934 Corylus avellana HOM05D002318 ORTHO05D008744 3.6e-138 495.4 337 73.9
Cfa008908 Carpinus fangiana HOM05D002318 ORTHO05D008744 5.2e-137 491.5 341 72.7
Hund05860 Selenicereus undatus HOM05D002318 ORTHO05D008744 4.4e-136 488.4 332 74.1
Ah.13g073950 Amaranthus hybridus HOM05D002318 ORTHO05D008744 2.8e-135 485.7 360 68.9
CiPaw.05G128000 Carya illinoinensis HOM05D002318 ORTHO05D008744 8.3e-135 484.2 336 73.8
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 1.0e-132 477.2 335 71.3
GSVIVG01012177001 Vitis vinifera HOM05D002318 ORTHO05D008744 6.5e-132 474.6 336 71.4
EL10As3g23350 Beta vulgaris HOM05D002318 ORTHO05D008744 1.2e-130 470.3 366 65.0
QL03p070830 Quercus lobata HOM05D002318 ORTHO05D008744 1.6e-130 469.9 335 70.7
Atru.chr11.1690 Acer truncatum HOM05D002318 ORTHO05D008744 2.2e-127 459.5 333 69.4
MD16G1064900 Malus domestica HOM05D002318 ORTHO05D008744 3.7e-127 458.8 341 67.2
Phvul.002G069400 Phaseolus vulgaris HOM05D002318 ORTHO05D008744 4.9e-127 458.4 335 67.8
RcHm_v2.0_Chr4g0438871 Rosa chinensis HOM05D002318 ORTHO05D008744 8.3e-127 457.6 336 68.8
Potri.010G161600 Populus trichocarpa HOM05D002318 ORTHO05D008744 9.2e-126 454.1 341 67.2
AUR62038089 Chenopodium quinoa HOM05D002318 ORTHO05D008744 5.9e-125 451.4 338 69.2
Glyma.02G113500 Glycine max HOM05D002318 ORTHO05D008744 3.8e-124 448.7 335 68.7
Cc11_g12380 Coffea canephora HOM05D002318 ORTHO05D008744 5.0e-124 448.4 337 67.7
THA.LOC104805183 Tarenaya hassleriana HOM05D002318 ORTHO05D008744 1.5e-123 446.8 333 69.1
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 3.3e-123 445.7 335 66.6
Aqoxy3G03551 Aquilegia oxysepala HOM05D002318 ORTHO05D008744 4.3e-123 445.3 338 68.9
Lj2g0021077 Lotus japonicus HOM05D002318 ORTHO05D008744 4.3e-123 445.3 335 66.0
Sabra10G0122900 Salix brachista HOM05D002318 ORTHO05D008744 4.3e-123 445.3 341 66.9
FAN22G0051 Fragaria x ananassa HOM05D002318 ORTHO05D008744 2.8e-122 442.6 335 66.3
Thecc.02G336500 Theobroma cacao HOM05D002318 ORTHO05D008744 2.8e-122 442.6 337 65.0
VMungo1215G2584 Vigna mungo HOM05D002318 ORTHO05D008744 6.1e-122 441.4 335 66.9
TWI75G0802 Tripterygium wilfordii HOM05D002318 ORTHO05D008744 8.0e-122 441.0 343 65.9
Lalb_Chr17g0340981 Lupinus albus HOM05D002318 ORTHO05D008744 1.0e-121 440.7 333 66.1
TPR.G22412 Trifolium pratense HOM05D002318 ORTHO05D008744 1.4e-121 440.3 342 65.2
Ca_04907_v3 Cicer arietinum L. HOM05D002318 ORTHO05D008744 2.3e-121 439.5 332 65.4
Psat2g128360 Pisum sativum HOM05D002318 ORTHO05D008744 3.0e-121 439.1 333 64.9
PGR119G0925 Punica granatum HOM05D002318 ORTHO05D008744 5.2e-121 438.3 340 64.4
COL.COLO4_27936 Corchorus olitorius HOM05D002318 ORTHO05D008744 6.8e-121 438.0 336 64.6
FAN17G2010 Fragaria x ananassa HOM05D002318 ORTHO05D008744 2.6e-120 436.0 346 64.5
CANSAT54G0184 Cannabis sativa HOM05D002318 ORTHO05D008744 3.4e-120 435.6 334 67.1
MBI16_g06774_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D008744 3.4e-120 435.6 336 67.9
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 5.7e-120 434.9 332 63.6
Nitab4.5_0000334g0260 Nicotiana tabacum HOM05D002318 ORTHO05D008744 5.7e-120 434.9 339 66.1
Sopen05g007450 Solanum pennellii HOM05D002318 ORTHO05D008744 9.8e-120 434.1 339 65.8
Ciclev10032054m.g Citrus clementina HOM05D002318 ORTHO05D008744 2.9e-119 432.6 333 67.0
Eucgr.G02464 Eucalyptus grandis HOM05D002318 ORTHO05D008744 4.9e-119 431.8 337 65.0
PGSC0003DMG401028329 Solanum tuberosum HOM05D002318 ORTHO05D008744 4.9e-119 431.8 339 64.9
PGSC0003DMG402022110 Solanum tuberosum HOM05D002318 ORTHO05D008744 4.9e-119 431.8 339 64.9
arahy.Tifrunner.gnm1.ann1.T0481B Arachis hypogaea HOM05D002318 ORTHO05D008744 1.8e-118 429.9 334 66.2
HanXRQChr12g0362851 Helianthus annuus HOM05D002318 ORTHO05D008744 1.8e-118 429.9 338 63.0
arahy.Tifrunner.gnm1.ann1.T5ZGHX Arachis hypogaea HOM05D002318 ORTHO05D008744 5.4e-118 428.3 327 67.0
Duzib268G0798 Durio zibethinus HOM05D002318 ORTHO05D008744 1.2e-117 427.2 342 62.6
CAN.G1340.13 Capsicum annuum HOM05D002318 ORTHO05D008744 3.5e-117 425.6 339 64.6
Oeu021096.1 Olea europaea HOM05D002318 ORTHO05D008744 1.0e-116 424.1 340 65.0
MELO3C011434.2 Cucumis melo HOM05D002318 ORTHO05D008744 1.7e-116 423.3 338 63.0
FAN12G0082 Fragaria x ananassa HOM05D002318 ORTHO05D008744 1.7e-116 423.3 335 65.1
Cpa.g.sc1.87 Carica papaya HOM05D002318 ORTHO05D008744 2.3e-116 422.9 330 66.4
CsaV3_6G032440 Cucumis sativus L. HOM05D002318 ORTHO05D008744 3.0e-116 422.5 337 63.5
AL5G13100 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 5.0e-116 421.8 338 63.6
AL5G13140 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 5.0e-116 421.8 338 63.6
Gorai.013G091200 Gossypium raimondii HOM05D002318 ORTHO05D008744 1.5e-115 420.2 341 61.9
Carub.0005s0236 Capsella rubella HOM05D002318 ORTHO05D008744 2.5e-115 419.5 339 64.6
Sp2g14310 Schrenkiella parvula HOM05D002318 ORTHO05D008744 7.3e-115 417.9 272 75.7
Solyc05g012620.4 Solanum lycopersicum HOM05D002318 ORTHO05D008744 9.5e-115 417.5 278 73.0
Gohir.A13G079900 Gossypium hirsutum HOM05D002318 ORTHO05D008744 1.2e-114 417.2 341 61.6
Thhalv10004578m.g Eutrema salsugineum HOM05D002318 ORTHO05D008744 3.6e-114 415.6 338 64.8
CARHR145730 Cardamine hirsuta HOM05D002318 ORTHO05D008744 4.7e-114 415.2 339 64.3
AT2G03390 Arabidopsis thaliana HOM05D002318 ORTHO05D008744 6.2e-114 414.8 338 64.2
Actinidia19922 Actinidia chinensis HOM05D002318 ORTHO05D008744 8.0e-114 414.5 334 63.8
Aa31LG2G7170 Aethionema arabicum HOM05D002318 ORTHO05D008744 2.3e-113 412.9 348 63.8
BcaC06g31184 Brassica carinata HOM05D002318 ORTHO05D008744 3.4e-112 409.1 272 73.9
BcaC06g34000 Brassica carinata HOM05D002318 ORTHO05D008744 7.5e-112 407.9 272 73.5
Peaxi162Scf00314g00023 Petunia axillaris HOM05D002318 ORTHO05D008744 9.8e-112 407.5 378 58.5
CSS0013540 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 1.7e-111 406.8 335 64.5
Rhsim12G0076700 Rhododendron simsii HOM05D002318 ORTHO05D008744 6.4e-111 404.8 344 61.6
ECA233G4874 Erigeron canadensis HOM05D002318 ORTHO05D008744 8.3e-111 404.4 316 64.2
ATR0111G011 Amborella trichopoda HOM05D002318 ORTHO05D008744 7.0e-110 401.4 295 70.5
BraA06t27203Z Brassica rapa HOM05D002318 ORTHO05D008744 9.2e-110 401.0 340 64.1
C07p33850 Brassica napus HOM05D002318 ORTHO05D008744 1.6e-109 400.2 274 73.4
vmacro01330 Vaccinium macrocarpon HOM05D002318 ORTHO05D008744 1.6e-109 400.2 363 57.9
ClCG08G010240 Citrullus lanatus HOM05D002318 ORTHO05D008744 2.7e-109 399.4 379 57.0
BolC7t43899H Brassica oleracea HOM05D002318 ORTHO05D008744 4.6e-109 398.7 274 73.0
Migut.L01223 Erythranthe guttata HOM05D002318 ORTHO05D008744 4.6e-109 398.7 337 61.1
DCAR_027449 Daucus carota HOM05D002318 ORTHO05D008744 3.9e-108 395.6 349 59.9
Medtr5g043480 Medicago truncatula HOM05D002318 ORTHO05D008744 1.2e-106 390.6 334 60.5
Prupe.1G282000 Prunus persica HOM05D002318 ORTHO05D008744 8.9e-105 384.4 341 59.8
Gohir.D13G079700 Gossypium hirsutum HOM05D002318 ORTHO05D008744 7.5e-104 381.3 341 57.8
Os08g0172200 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 1.4e-102 377.1 290 66.6
Hma1.2p1_0354F.1_g133650 Hydrangea macrophylla HOM05D002318 ORTHO05D008744 1.6e-101 373.6 288 65.6
CDE04G0061 Ceratophyllum demersum HOM05D002318 ORTHO05D008744 3.0e-100 369.4 303 62.7
Nn3g17371 Nelumbo nucifera HOM05D002318 ORTHO05D008744 9.5e-99 364.4 288 66.7
FvH4_4g30500 Fragaria vesca HOM05D002318 ORTHO05D008744 2.1e-98 363.2 274 67.9
SalBow2G2755 Salvia bowleyana HOM05D002318 ORTHO05D008744 1.8e-97 360.1 336 55.7
Manes.01G030400 Manihot esculenta HOM05D002318 ORTHO05D008744 1.2e-96 357.5 288 64.2
Dinv34114 Davidia involucrata HOM05D002318 ORTHO05D008744 1.5e-96 357.1 275 69.1
unitig_22.g6902 Utricularia gibba HOM05D002318 ORTHO05D008744 1.2e-93 347.4 290 62.1
SEGI_16280 Sequoiadendron giganteum HOM05D002318 ORTHO05D008744 2.1e-93 346.7 285 64.2
Sed0004708 Sechium edule HOM05D002318 ORTHO05D008744 7.6e-88 328.2 272 62.5
Mapoly0001s0530 Marchantia polymorpha HOM05D002318 ORTHO05D008744 6.4e-87 325.1 249 62.7
Lj6C782T15 Lonicera japonica HOM05D002318 ORTHO05D008744 1.9e-86 323.6 342 52.3
A06p43150 Brassica napus HOM05D002318 ORTHO05D008744 1.7e-84 317.0 295 61.4
SGA_v2.0_scaffold16G07752 Striga asiatica HOM05D002318 ORTHO05D008744 7.3e-83 311.6 275 57.5
Pp3c7_3960 Physcomitrium patens HOM05D002318 ORTHO05D008744 3.1e-81 306.2 249 59.4
PSO591G0040 Papaver somniferum HOM05D002318 ORTHO05D008744 5.3e-81 305.4 262 60.7
AagrBONN_evm.TU.Sc2ySwM_117.1985 Anthoceros agrestis HOM05D002318 ORTHO05D008744 1.3e-76 290.8 262 55.3
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 2.4e-73 280.0 222 69.8
Actinidia31948 Actinidia chinensis HOM05D002318 ORTHO05D008744 1.3e-68 264.2 280 51.1
CBR_g27967 Chara braunii HOM05D002318 ORTHO05D008744 8.2e-66 255.0 252 52.8
arahy.Tifrunner.gnm1.ann1.1U2S5X Arachis hypogaea HOM05D002318 ORTHO05D008744 2.6e-64 250.0 225 61.8
arahy.Tifrunner.gnm1.ann1.TF58FW Arachis hypogaea HOM05D002318 ORTHO05D008744 4.5e-64 249.2 225 61.8
CSS0007300 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 1.3e-63 247.7 220 64.1
SMO115G0105 Selaginella moellendorffii HOM05D002318 ORTHO05D008744 1.2e-61 241.1 217 55.3
Glyma.01G055000 Glycine max HOM05D002318 ORTHO05D008744 1.6e-61 240.7 192 67.7
FAN16G1553 Fragaria x ananassa HOM05D002318 ORTHO05D008744 8.7e-60 235.0 158 71.5
CSS0032009 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 1.7e-47 194.1 234 45.3
Zm00001eb370310 Zea mays HOM05D002318 ORTHO05D008744 1.9e-46 190.7 220 50.5
Cre02.g113700 Chlamydomonas reinhardtii HOM05D002318 ORTHO05D008744 8.2e-42 175.3 277 39.0
Aa31sc734G30 Aethionema arabicum HOM05D002318 ORTHO05D008744 4.5e-40 169.5 184 56.0
PRCOL_00000845 Prasinoderma coloniale HOM05D002318 ORTHO05D008744 5.0e-39 166.0 280 35.4
Glyma.01G054950 Glycine max HOM05D002318 ORTHO05D008744 6.1e-21 105.9 80 65.0
CBR_g50304 Chara braunii HOM05D020303 ORTHO05D021299 1.3e-18 98.2 157 36.9
Os01g0764500 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 2.9e-15 87.0 62 64.5
arahy.Tifrunner.gnm1.ann1.QV9UMR Arachis hypogaea HOM05D000001 ORTHO05D000003 2.0e-08 64.3 152 32.2
AagrBONN_evm.TU.Sc2ySwM_117.310 Anthoceros agrestis HOM05D020303 ORTHO05D021299 3.5e-08 63.5 113 31.9
MD13G1066100 Malus domestica HOM05D002318 ORTHO05D008744 5.0e-07 59.7 76 42.1
Lsat_1_v5_gn_5_151580 Lactuca sativa HOM05D002318 ORTHO05D008744 1.5e-06 58.2 56 51.8
Cfa025736 Carpinus fangiana HOM05D020303 ORTHO05D021299 3.3e-06 57.0 70 37.1


User provided reference genes

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