Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0002140 Simmondsia chinensis HOM05D006796 ORTHO05D008615 3.4e-144 515.0 260 100.0
EL10Ac6g13260 Beta vulgaris HOM05D006796 ORTHO05D008615 6.4e-95 351.3 273 70.7
Potri.010G164400 Populus trichocarpa HOM05D006796 ORTHO05D008615 3.2e-94 349.0 285 66.3
Sabra10G0124800 Salix brachista HOM05D006796 ORTHO05D008615 1.2e-93 347.1 291 65.3
Actinidia19934 Actinidia chinensis HOM05D006796 ORTHO05D008615 3.0e-92 342.4 277 66.8
Manes.05G105900 Manihot esculenta HOM05D006796 ORTHO05D008615 3.0e-92 342.4 281 66.2
VMungo1215G0648 Vigna mungo HOM05D006796 ORTHO05D008615 1.3e-90 337.0 260 68.5
Hund25209 Selenicereus undatus HOM05D006796 ORTHO05D008615 6.2e-90 334.7 277 68.6
Atru.chr11.1722 Acer truncatum HOM05D006796 ORTHO05D008615 1.4e-89 333.6 283 65.0
Cc11_g12630 Coffea canephora HOM05D006796 ORTHO05D008615 1.8e-89 333.2 280 65.0
arahy.Tifrunner.gnm1.ann1.NP20FV Arachis hypogaea HOM05D006796 ORTHO05D008615 4.0e-89 332.0 286 64.0
arahy.Tifrunner.gnm1.ann1.R8NX8D Arachis hypogaea HOM05D006796 ORTHO05D008615 4.0e-89 332.0 286 64.0
AUR62032832 Chenopodium quinoa HOM05D006796 ORTHO05D008615 4.0e-89 332.0 276 67.4
Phvul.002G103200 Phaseolus vulgaris HOM05D006796 ORTHO05D008615 4.0e-89 332.0 260 68.1
Thecc.02G339900 Theobroma cacao HOM05D006796 ORTHO05D008615 6.9e-89 331.3 281 64.8
CSS0026382 Camellia sinensis var. sinensis HOM05D006796 ORTHO05D008615 4.5e-88 328.6 220 75.9
TWI31G0717 Tripterygium wilfordii HOM05D006796 ORTHO05D008615 1.7e-87 326.6 271 66.4
SalBow8G2627 Salvia bowleyana HOM05D006796 ORTHO05D008615 2.9e-87 325.9 271 66.4
Ciclev10032381m.g Citrus clementina HOM05D006796 ORTHO05D008615 4.9e-87 325.1 269 66.5
Nn4g23271 Nelumbo nucifera HOM05D006796 ORTHO05D008615 4.9e-87 325.1 277 62.5
Glyma.02G111300 Glycine max HOM05D006796 ORTHO05D008615 6.4e-87 324.7 260 67.7
Gorai.012G186400 Gossypium raimondii HOM05D006796 ORTHO05D008615 6.4e-87 324.7 286 62.6
Glyma.01G052700 Glycine max HOM05D006796 ORTHO05D008615 8.4e-87 324.3 261 67.4
CiPaw.07G071700 Carya illinoinensis HOM05D006796 ORTHO05D008615 1.1e-86 323.9 289 61.6
Haze_11961 Corylus avellana HOM05D006796 ORTHO05D008615 1.1e-86 323.9 303 60.7
Gohir.D04G191000 Gossypium hirsutum HOM05D006796 ORTHO05D008615 1.4e-86 323.6 286 62.2
Psat2g126440 Pisum sativum HOM05D006796 ORTHO05D008615 1.9e-86 323.2 267 65.9
CAN.G964.30 Capsicum annuum HOM05D006796 ORTHO05D008615 2.4e-86 322.8 284 62.7
Dinv34092 Davidia involucrata HOM05D006796 ORTHO05D008615 2.4e-86 322.8 303 60.1
Cpa.g.sc1.63 Carica papaya HOM05D006796 ORTHO05D008615 3.2e-86 322.4 279 64.5
Duzib268G1785 Durio zibethinus HOM05D006796 ORTHO05D008615 3.2e-86 322.4 283 61.8
Ca_04876_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 4.2e-86 322.0 267 65.5
ClCG09G022060 Citrullus lanatus HOM05D006796 ORTHO05D008615 4.2e-86 322.0 272 63.6
GSVIVG01012496001 Vitis vinifera HOM05D006796 ORTHO05D008615 4.2e-86 322.0 229 73.4
Eucgr.B03198 Eucalyptus grandis HOM05D006796 ORTHO05D008615 7.1e-86 321.2 208 76.9
CsaV3_5G022970 Cucumis sativus L. HOM05D006796 ORTHO05D008615 1.6e-85 320.1 269 63.6
Migut.L01249 Erythranthe guttata HOM05D006796 ORTHO05D008615 2.1e-85 319.7 271 63.1
MSTRG.13431 Avicennia marina HOM05D006796 ORTHO05D008615 2.7e-85 319.3 270 63.7
Lj3A1033T56 Lonicera japonica HOM05D006796 ORTHO05D008615 5.1e-84 315.1 277 62.1
Lj2g0006920 Lotus japonicus HOM05D006796 ORTHO05D008615 5.1e-84 315.1 271 63.1
Nitab4.5_0000391g0260 Nicotiana tabacum HOM05D006796 ORTHO05D008615 5.1e-84 315.1 273 61.9
PGR102G1583 Punica granatum HOM05D006796 ORTHO05D008615 6.7e-84 314.7 196 78.6
PGSC0003DMG400028345 Solanum tuberosum HOM05D006796 ORTHO05D008615 1.1e-83 313.9 282 60.3
Gohir.D04G190901 Gossypium hirsutum HOM05D006796 ORTHO05D008615 2.5e-83 312.8 285 60.7
FAN07G2185 Fragaria x ananassa HOM05D006796 ORTHO05D008615 3.3e-83 312.4 280 63.6
FAN12G1163 Fragaria x ananassa HOM05D006796 ORTHO05D008615 5.6e-83 311.6 282 62.4
FvH4_4g30770 Fragaria vesca HOM05D006796 ORTHO05D008615 3.7e-82 308.9 282 62.1
FAN22G2031 Fragaria x ananassa HOM05D006796 ORTHO05D008615 3.7e-82 308.9 282 62.1
TAR629G0550 Trochodendron aralioides HOM05D006796 ORTHO05D008615 3.7e-82 308.9 206 71.8
AUR62005838 Chenopodium quinoa HOM05D006796 ORTHO05D008615 2.4e-81 306.2 274 65.7
Peaxi162Scf00222g00236 Petunia axillaris HOM05D006796 ORTHO05D008615 2.4e-81 306.2 259 63.3
Sopen05g007830 Solanum pennellii HOM05D006796 ORTHO05D008615 3.1e-81 305.8 280 60.4
RcHm_v2.0_Chr4g0439161 Rosa chinensis HOM05D006796 ORTHO05D008615 5.3e-81 305.1 283 59.7
MELO3C002984.2 Cucumis melo HOM05D006796 ORTHO05D008615 6.9e-81 304.7 305 55.7
Prupe.1G279300 Prunus persica HOM05D006796 ORTHO05D008615 6.9e-81 304.7 196 77.6
CANSAT64G1871 Cannabis sativa HOM05D006796 ORTHO05D008615 9.0e-81 304.3 286 59.1
Hma1.2p1_0354F.1_g133830 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 1.2e-80 303.9 201 74.6
TAR371G0712 Trochodendron aralioides HOM05D006796 ORTHO05D008615 1.2e-80 303.9 281 59.4
Lalb_Chr10g0098461 Lupinus albus HOM05D006796 ORTHO05D008615 2.0e-80 303.1 263 62.7
TPR.G19931 Trifolium pratense HOM05D006796 ORTHO05D008615 4.5e-80 302.0 269 62.8
THA.LOC104805179 Tarenaya hassleriana HOM05D006796 ORTHO05D008615 7.6e-80 301.2 270 61.5
MSTRG.2332 Avicennia marina HOM05D006796 ORTHO05D008615 3.8e-79 298.9 239 66.1
CARHR014360 Cardamine hirsuta HOM05D006796 ORTHO05D008615 2.5e-78 296.2 277 59.6
Thhalv10008453m.g Eutrema salsugineum HOM05D006796 ORTHO05D008615 4.2e-78 295.4 278 59.4
Oeu055099.3 Olea europaea HOM05D006796 ORTHO05D008615 9.3e-78 294.3 338 53.8
CiPaw.05G129900 Carya illinoinensis HOM05D006796 ORTHO05D008615 1.2e-77 293.9 197 75.1
QL03p069702 Quercus lobata HOM05D006796 ORTHO05D008615 3.5e-77 292.4 358 48.9
MD16G1067400 Malus domestica HOM05D006796 ORTHO05D008615 4.6e-77 292.0 196 74.5
SGA_v2.0_scaffold63G21639 Striga asiatica HOM05D006796 ORTHO05D008615 4.6e-77 292.0 283 61.8
PSO478G1165 Papaver somniferum HOM05D006796 ORTHO05D008615 1.3e-76 290.4 195 73.8
ECA234G4054 Erigeron canadensis HOM05D006796 ORTHO05D008615 1.8e-76 290.0 214 70.1
MD13G1068600 Malus domestica HOM05D006796 ORTHO05D008615 1.8e-76 290.0 196 74.0
AL1G25830 Arabidopsis lyrata HOM05D006796 ORTHO05D008615 2.3e-76 289.7 277 59.6
PSO017G7370 Papaver somniferum HOM05D006796 ORTHO05D008615 5.1e-76 288.5 195 73.3
Aqoxy3G00482 Aquilegia oxysepala HOM05D006796 ORTHO05D008615 8.7e-76 287.7 196 71.4
AT1G13990 Arabidopsis thaliana HOM05D006796 ORTHO05D008615 1.1e-75 287.3 278 57.9
C05p11750 Brassica napus HOM05D006796 ORTHO05D008615 4.3e-75 285.4 263 59.7
Lsat_1_v5_gn_4_10660 Lactuca sativa HOM05D006796 ORTHO05D008615 4.3e-75 285.4 290 57.2
CDE02G1750 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 1.6e-74 283.5 205 69.3
Carub.0001s1368 Capsella rubella HOM05D006796 ORTHO05D008615 3.7e-74 282.3 196 71.9
Aa31LG1G1040 Aethionema arabicum HOM05D006796 ORTHO05D008615 8.2e-74 281.2 317 53.0
Cfa008932 Carpinus fangiana HOM05D006796 ORTHO05D008615 3.1e-73 279.3 412 44.2
vmacro01347 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 4.1e-73 278.9 302 55.3
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 3.4e-72 275.8 272 56.2
BcaC05g25295 Brassica carinata HOM05D006796 ORTHO05D008615 7.6e-72 274.6 265 58.5
BolC5t29921H Brassica oleracea HOM05D006796 ORTHO05D008615 6.5e-71 271.6 293 54.3
ATR0564G337 Amborella trichopoda HOM05D006796 ORTHO05D008615 5.5e-70 268.5 194 69.1
COL.COLO4_27978 Corchorus olitorius HOM05D006796 ORTHO05D008615 1.6e-69 266.9 280 56.1
BraA06t24185Z Brassica rapa HOM05D006796 ORTHO05D008615 7.9e-69 264.6 225 63.1
HPP92_016903 Vanilla planifolia HOM05D006796 ORTHO05D008615 2.3e-68 263.1 208 63.9
Zm00001eb402440 Zea mays HOM05D006796 ORTHO05D008615 5.1e-68 261.9 203 65.5
Os03g0168200 Oryza sativa ssp. japonica HOM05D006796 ORTHO05D008615 1.1e-65 254.2 196 65.3
Sed0012383 Sechium edule HOM05D006796 ORTHO05D008615 1.4e-65 253.8 230 58.7
HanXRQChr12g0379181 Helianthus annuus HOM05D006796 ORTHO05D008615 5.9e-64 248.4 197 66.5
Mapoly0042s0065 Marchantia polymorpha HOM05D006796 ORTHO05D008615 2.6e-59 233.0 234 54.7
Nitab4.5_0004906g0020 Nicotiana tabacum HOM05D006796 ORTHO05D008615 4.4e-59 232.3 150 75.3
A06p09990 Brassica napus HOM05D006796 ORTHO05D008615 4.8e-58 228.8 231 56.3
arahy.Tifrunner.gnm1.ann1.T4YGUP Arachis hypogaea HOM05D006796 ORTHO05D008615 3.6e-53 212.6 155 71.0
Potri.008G090900 Populus trichocarpa HOM05D006796 ORTHO05D008615 3.9e-52 209.1 261 51.0
Gohir.1Z049816 Gossypium hirsutum HOM05D006796 ORTHO05D008615 3.8e-47 192.6 125 75.2
Actinidia31964 Actinidia chinensis HOM05D006796 ORTHO05D008615 6.5e-47 191.8 129 76.0
CBR_g41640 Chara braunii HOM05D006796 ORTHO05D008615 7.2e-46 188.3 240 47.1
Medtr5g042520 Medicago truncatula HOM05D006796 ORTHO05D008615 1.6e-45 187.2 196 58.2
SMO271G0176 Selaginella moellendorffii HOM05D006796 ORTHO05D008615 6.7e-44 181.8 211 49.8
Hma1.2p1_0354F.1_g133820 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 1.1e-38 164.5 106 78.3
Solyc05g013060.4 Solanum lycopersicum HOM05D006796 ORTHO05D008615 1.6e-37 160.6 187 52.9
Rhsim12G0078900 Rhododendron simsii HOM05D006796 ORTHO05D008615 9.1e-33 144.8 391 34.0
AagrBONN_evm.TU.Sc2ySwM_344.1473 Anthoceros agrestis HOM05D006796 ORTHO05D008615 8.0e-29 131.7 148 52.0
CDE09G0941 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 1.6e-24 117.5 74 73.0
Nn2g13928 Nelumbo nucifera HOM05D006796 ORTHO05D008615 3.5e-24 116.3 101 59.4
vmacro01341 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 1.3e-23 114.4 220 40.0
Oeu021077.1 Olea europaea HOM05D006796 ORTHO05D008615 3.6e-21 106.3 280 33.6
SEGI_14917 Sequoiadendron giganteum HOM05D006796 ORTHO05D008615 2.6e-19 100.1 73 64.4
SalBow1G4829 Salvia bowleyana HOM05D006796 ORTHO05D000018 2.8e-13 80.1 71 60.6
PRCOL_00001264 Prasinoderma coloniale HOM05D006796 ORTHO05D008615 1.1e-09 68.2 250 26.8
Nn2g11199 Nelumbo nucifera HOM05D006796 ORTHO05D008615 3.2e-09 66.6 61 52.5
Gohir.A12G247950 Gossypium hirsutum HOM05D006796 ORTHO05D008615 1.6e-08 64.3 78 48.7
Ca_27564_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 5.0e-07 59.3 38 73.7
Ca_28040_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 1.9e-06 57.4 37 70.3
Ca_04476_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 2.5e-06 57.0 115 38.3
Ca_03868_v3 Cicer arietinum L. HOM05D000047 ORTHO05D000044 7.3e-06 55.5 37 70.3


User provided reference genes

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