Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 7.0e-145 517.3 268 100.0
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 6.1e-56 221.9 245 51.8
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.8e-53 213.0 167 62.3
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 1.1e-52 211.1 172 64.5
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 6.9e-52 208.4 239 50.6
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.2e-51 207.6 217 53.0
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.0e-51 206.8 170 64.7
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.6e-51 206.5 168 61.9
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 3.4e-51 206.1 170 62.9
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 3.4e-51 206.1 169 64.5
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 5.9e-51 205.3 237 51.5
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 5.9e-51 205.3 166 62.7
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 7.7e-51 204.9 167 65.9
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.0e-50 204.5 169 63.3
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 1.3e-50 204.1 185 58.9
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 1.7e-50 203.8 250 49.6
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 2.2e-50 203.4 174 59.8
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 2.9e-50 203.0 245 47.8
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.8e-50 202.6 170 64.1
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.8e-50 202.6 170 63.5
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 3.8e-50 202.6 167 63.5
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 3.8e-50 202.6 167 62.9
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 5.0e-50 202.2 159 64.2
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 8.5e-50 201.4 168 64.9
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 8.5e-50 201.4 168 65.5
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 8.5e-50 201.4 168 63.1
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 8.5e-50 201.4 185 57.3
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 8.5e-50 201.4 172 60.5
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 1.4e-49 200.7 167 61.1
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.9e-49 200.3 223 48.9
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 2.5e-49 199.9 170 62.9
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 2.5e-49 199.9 168 60.7
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 2.5e-49 199.9 169 59.8
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 4.2e-49 199.1 135 71.1
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 5.5e-49 198.7 168 60.7
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 5.5e-49 198.7 172 60.5
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 9.4e-49 198.0 229 50.2
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 9.4e-49 198.0 199 54.8
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 9.4e-49 198.0 209 56.5
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 1.6e-48 197.2 170 61.2
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 1.6e-48 197.2 169 59.2
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 2.1e-48 196.8 166 62.0
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 3.6e-48 196.1 168 59.5
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 6.1e-48 195.3 224 53.1
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 7.9e-48 194.9 207 51.7
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 1.0e-47 194.5 198 55.6
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 1.4e-47 194.1 176 60.2
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.4e-47 194.1 169 60.4
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.8e-47 193.7 168 60.7
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.3e-47 193.4 168 59.5
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 3.0e-47 193.0 168 59.5
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 3.0e-47 193.0 167 59.9
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 3.9e-47 192.6 232 49.6
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 5.1e-47 192.2 238 48.7
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 5.1e-47 192.2 171 57.9
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 5.1e-47 192.2 171 57.9
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.5e-46 190.7 134 69.4
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 2.0e-46 190.3 170 60.0
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 3.3e-46 189.5 176 55.7
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 3.3e-46 189.5 195 54.9
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 3.3e-46 189.5 191 57.6
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 3.3e-46 189.5 134 67.2
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 5.7e-46 188.7 172 58.1
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 5.7e-46 188.7 181 56.4
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 5.7e-46 188.7 134 67.2
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 5.7e-46 188.7 223 49.8
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 9.7e-46 188.0 134 67.9
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 6.3e-45 185.3 174 58.6
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 8.2e-45 184.9 172 58.1
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 1.1e-44 184.5 152 60.5
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 2.4e-44 183.3 226 46.9
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 2.4e-44 183.3 181 56.4
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.4e-44 183.3 237 46.8
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 3.1e-44 183.0 188 51.6
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 3.1e-44 183.0 168 60.1
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 4.1e-44 182.6 170 58.2
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 5.3e-44 182.2 168 56.5
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 4.5e-43 179.1 173 56.6
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 5.9e-43 178.7 169 55.0
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 7.7e-43 178.3 188 52.7
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 7.7e-43 178.3 146 62.3
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 1.3e-42 177.6 173 55.5
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.3e-42 177.6 174 52.3
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 1.3e-42 177.6 173 54.9
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.2e-42 176.8 174 51.7
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 2.2e-42 176.8 134 67.2
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.2e-42 176.8 219 47.0
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.9e-42 176.4 174 50.6
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 5.0e-42 175.6 167 56.9
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 5.0e-42 175.6 167 56.9
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 6.5e-42 175.3 225 46.7
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 8.5e-42 174.9 225 47.6
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 8.5e-42 174.9 203 48.8
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.1e-41 174.5 165 54.5
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.9e-41 173.7 248 42.3
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.9e-41 173.7 218 46.8
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.9e-41 173.7 238 44.1
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 2.5e-41 173.3 167 56.3
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 3.2e-41 172.9 175 53.7
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 3.2e-41 172.9 220 45.9
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 2.1e-40 170.2 175 53.1
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.7e-40 169.9 204 48.0
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 4.7e-40 169.1 171 49.1
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 4.7e-40 169.1 187 50.3
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 8.0e-40 168.3 137 62.0
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 1.0e-39 167.9 167 50.3
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 1.0e-39 167.9 167 50.3
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 1.4e-39 167.5 173 52.6
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.8e-39 167.2 187 50.3
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.8e-39 167.2 167 50.3
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.8e-39 167.2 167 50.3
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.8e-39 167.2 134 61.9
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 3.9e-39 166.0 167 49.7
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 6.7e-39 165.2 167 49.7
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 1.1e-38 164.5 133 61.7
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 2.0e-38 163.7 171 50.3
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 2.6e-38 163.3 171 50.3
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 2.6e-38 163.3 171 50.3
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 4.4e-38 162.5 171 49.7
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 5.7e-38 162.2 169 51.5
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 2.2e-37 160.2 132 60.6
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 3.7e-37 159.5 236 42.4
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 4.8e-37 159.1 167 48.5
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 4.8e-37 159.1 278 39.6
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 8.2e-37 158.3 135 56.3
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 8.2e-37 158.3 248 41.5
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 3.1e-36 156.4 171 49.7
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 5.3e-36 155.6 169 52.1
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 7.0e-36 155.2 170 51.8
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 9.1e-36 154.8 171 49.7
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.9e-33 147.1 132 58.3
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 5.7e-30 135.6 189 43.9
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.1e-28 131.3 126 51.6
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 4.1e-28 129.4 118 55.1
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 4.1e-28 129.4 130 54.6
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 5.3e-28 129.0 126 50.8
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 5.3e-28 129.0 138 50.0
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 7.0e-28 128.6 129 52.7
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 9.1e-28 128.3 133 50.4
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 9.1e-28 128.3 118 53.4
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 5.9e-27 125.6 117 53.8
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.7e-26 124.0 129 51.2
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 6.5e-26 122.1 129 50.4
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 4.2e-25 119.4 149 43.0
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 7.2e-25 118.6 107 54.2
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 7.2e-25 118.6 113 51.3
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 7.0e-20 102.1 169 37.3
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 7.7e-19 98.6 140 42.9
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 5.5e-17 92.4 84 54.8
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 9.5e-17 91.7 89 49.4
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 8.0e-16 88.6 80 62.5
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 8.0e-16 88.6 155 38.1
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.0e-15 88.2 99 51.5
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 2.6e-14 83.6 85 49.4
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.7e-13 79.7 123 39.0
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.4e-12 75.9 56 64.3
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 5.0e-10 69.3 120 34.2
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 6.6e-10 68.9 210 28.6
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 5.2e-07 59.3 76 51.3
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-06 58.2 63 50.8


User provided reference genes

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