Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 3.4e-153 545.0 289 100.0
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.2e-120 436.0 289 76.5
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 3.8e-120 435.3 289 76.1
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 4.9e-120 434.9 289 76.1
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 4.8e-115 418.3 323 68.4
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 2.5e-108 396.0 287 69.0
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 4.8e-107 391.7 289 71.6
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 6.2e-107 391.3 289 69.2
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.1e-106 390.6 285 69.1
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.8e-106 389.8 285 68.8
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 6.9e-106 387.9 290 69.3
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 9.0e-106 387.5 289 68.2
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 9.0e-106 387.5 287 67.2
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 2.6e-105 386.0 288 67.0
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 3.4e-105 385.6 289 68.5
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 4.5e-105 385.2 286 69.6
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 4.5e-105 385.2 289 68.2
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.8e-104 382.1 290 67.6
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 3.8e-104 382.1 290 67.2
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 1.9e-103 379.8 290 67.2
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 1.9e-103 379.8 286 67.8
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 1.9e-103 379.8 286 67.8
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 9.3e-103 377.5 286 67.1
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.2e-102 377.1 290 66.6
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 1.6e-102 376.7 289 67.5
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.7e-102 375.9 286 67.5
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 2.7e-102 375.9 286 68.2
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 3.5e-102 375.6 286 67.1
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 3.5e-102 375.6 292 66.1
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 4.6e-102 375.2 286 67.1
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 4.6e-102 375.2 290 67.6
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 1.3e-101 373.6 290 67.6
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.3e-101 373.6 285 67.7
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 1.8e-101 373.2 289 64.4
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 6.7e-101 371.3 289 66.1
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 6.7e-101 371.3 287 66.6
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 1.5e-100 370.2 286 65.7
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 1.9e-100 369.8 283 65.7
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 9.6e-100 367.5 283 66.8
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 1.3e-99 367.1 283 66.4
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.6e-99 366.7 282 68.4
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 3.7e-99 365.5 254 71.7
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 4.8e-99 365.2 283 66.8
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.1e-98 364.0 288 66.7
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.4e-98 363.6 294 65.3
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 1.8e-98 363.2 283 68.6
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.8e-98 363.2 286 65.0
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 9.0e-98 360.9 287 66.9
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 9.0e-98 360.9 287 66.9
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 9.0e-98 360.9 287 66.9
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 9.0e-98 360.9 286 66.1
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 9.0e-98 360.9 282 66.0
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.5e-97 360.1 287 66.2
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 2.6e-97 359.4 288 66.7
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.6e-97 359.4 300 64.3
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 5.8e-97 358.2 291 65.6
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 7.6e-97 357.8 286 65.4
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.7e-96 356.7 244 73.4
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 1.7e-96 356.7 283 64.0
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 2.2e-96 356.3 287 65.2
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 2.9e-96 355.9 277 67.9
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 3.8e-96 355.5 281 64.4
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 6.5e-96 354.8 287 65.5
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 8.4e-96 354.4 281 63.0
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 1.1e-95 354.0 280 65.0
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 1.9e-95 353.2 287 65.9
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.9e-95 353.2 264 68.6
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 2.5e-95 352.8 225 76.0
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.5e-95 352.8 294 62.6
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 3.2e-95 352.4 287 65.5
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 3.2e-95 352.4 287 65.5
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 3.2e-95 352.4 287 65.5
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 5.5e-95 351.7 286 63.6
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 5.5e-95 351.7 264 68.2
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 7.1e-95 351.3 287 64.8
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 1.2e-94 350.5 287 65.2
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 1.2e-94 350.5 287 65.2
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 2.1e-94 349.7 285 63.2
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 4.6e-94 348.6 287 62.7
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 6.0e-94 348.2 287 64.8
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 7.9e-94 347.8 225 74.2
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 7.9e-94 347.8 226 75.2
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.0e-93 347.4 280 64.6
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.0e-93 347.4 225 74.2
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.3e-93 347.1 295 63.1
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.8e-93 346.7 287 64.1
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 1.8e-93 346.7 280 64.6
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 3.3e-92 342.4 278 63.3
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 4.3e-92 342.0 291 59.8
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.3e-91 340.5 281 63.7
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 2.8e-91 339.3 294 59.2
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 3.7e-91 339.0 217 74.7
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.1e-90 337.4 295 62.7
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.4e-90 337.0 278 62.2
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.4e-90 337.0 295 59.0
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 3.1e-90 335.9 287 61.7
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 9.0e-90 334.3 294 58.8
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 3.4e-89 332.4 285 61.8
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 7.7e-89 331.3 245 69.4
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 1.0e-88 330.9 254 65.4
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.2e-88 329.7 295 60.3
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 2.2e-88 329.7 286 61.9
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 3.8e-88 328.9 274 65.0
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 5.0e-88 328.6 289 62.6
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 1.9e-87 326.6 225 72.0
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 2.3e-85 319.7 270 62.2
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 5.1e-85 318.5 291 59.1
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 7.4e-84 314.7 253 65.2
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 4.8e-83 312.0 284 58.5
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 7.7e-81 304.7 225 68.4
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 1.0e-80 304.3 243 62.6
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 5.0e-80 302.0 218 69.7
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 9.4e-79 297.7 217 68.2
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 2.3e-77 293.1 275 58.2
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 6.7e-77 291.6 298 53.4
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.5e-76 290.4 225 64.9
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 7.4e-76 288.1 225 64.9
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 9.1e-74 281.2 219 63.0
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 6.7e-69 265.0 292 47.3
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.5e-68 263.8 215 60.0
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.7e-64 250.4 209 64.6
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 2.2e-64 250.0 262 50.8
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 6.5e-64 248.4 289 46.0
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.2e-56 223.4 209 60.8
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 1.1e-55 221.1 269 48.7
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.7e-54 216.5 197 51.8
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.6e-54 216.1 135 74.8
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.1e-54 215.3 222 56.8
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.0e-53 214.5 197 51.8
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.0e-53 213.0 197 50.8
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.8e-53 211.8 197 50.8
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.2e-52 211.1 135 73.3
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.8e-45 185.3 137 67.9
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 3.4e-44 183.0 266 43.6
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.4e-44 183.0 197 46.7
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.6e-41 174.1 166 58.4
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-37 160.6 180 46.7
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 4.3e-31 139.4 119 59.7
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 1.5e-28 131.0 77 83.1
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.5e-28 128.6 206 43.2
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.2e-27 127.1 215 43.7
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 4.9e-27 125.9 83 75.9
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 1.1e-26 124.8 217 35.5
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 3.2e-26 123.2 96 67.7
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 3.2e-26 123.2 96 67.7
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 3.2e-26 123.2 193 40.4
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.1e-26 122.9 182 37.9
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.2e-25 121.3 199 35.2
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.5e-17 93.2 59 76.3
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.9e-15 87.4 58 72.4
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.6e-15 85.9 57 71.9
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.6e-14 84.3 58 70.7
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 2.1e-14 84.0 91 44.0
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.0e-12 77.4 64 64.1
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 6.4e-11 72.4 51 66.7
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.4e-10 71.2 54 66.7
EL10Ac2g04116 Beta vulgaris HOM05D004641 ORTHO05D005871 5.1e-08 62.8 46 71.7
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 4.3e-07 59.7 60 51.7
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 4.3e-07 59.7 60 51.7
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 2.8e-06 57.0 61 47.5
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 8.1e-06 55.5 90 38.9


User provided reference genes

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