Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 2.1e-109 399.1 204 100.0
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.2e-90 335.9 204 83.8
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 8.3e-90 334.0 202 82.2
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 8.3e-90 334.0 201 81.6
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.2e-89 332.0 204 82.8
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 4.1e-89 331.6 202 81.2
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 9.2e-89 330.5 200 80.5
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 2.7e-88 328.9 202 81.7
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 4.6e-88 328.2 202 80.2
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 1.3e-87 326.6 201 80.1
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 2.3e-87 325.9 202 80.7
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 3.9e-87 325.1 204 80.4
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 3.9e-87 325.1 202 79.7
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 1.5e-86 323.2 202 77.7
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 1.9e-86 322.8 200 80.0
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 2.5e-86 322.4 203 78.8
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 3.3e-86 322.0 199 80.9
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 9.5e-86 320.5 200 80.0
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 1.2e-85 320.1 198 79.8
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 2.1e-85 319.3 202 78.7
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 2.1e-85 319.3 204 76.5
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 2.8e-85 318.9 204 76.5
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 2.8e-85 318.9 198 78.8
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 6.2e-85 317.8 202 76.7
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 8.1e-85 317.4 202 77.2
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.4e-84 316.6 198 76.3
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 1.4e-84 316.6 202 77.2
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 1.8e-84 316.2 200 79.5
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 1.8e-84 316.2 199 77.9
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 2.3e-84 315.8 198 76.3
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 4.0e-84 315.1 202 76.2
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.2e-84 314.7 201 78.6
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 6.8e-84 314.3 198 75.8
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 8.9e-84 313.9 202 77.7
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.2e-83 313.5 204 75.5
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 5.8e-83 311.2 200 78.0
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 7.6e-83 310.8 204 76.0
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 7.6e-83 310.8 198 77.8
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 9.9e-83 310.5 202 75.2
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 1.7e-82 309.7 198 77.8
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 2.9e-82 308.9 204 74.5
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 3.7e-82 308.5 202 76.2
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 4.9e-82 308.1 196 76.0
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 4.9e-82 308.1 200 76.5
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 8.4e-82 307.4 202 74.3
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 1.1e-81 307.0 204 74.5
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.1e-81 307.0 200 76.0
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 5.4e-81 304.7 191 80.1
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 5.4e-81 304.7 201 75.6
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 9.2e-81 303.9 201 75.1
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 2.1e-80 302.8 198 76.3
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 2.7e-80 302.4 197 75.1
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 2.7e-80 302.4 197 75.1
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 6.0e-80 301.2 202 73.3
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.8e-80 300.8 200 74.5
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 1.0e-79 300.4 197 75.1
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.0e-79 300.4 198 74.7
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 1.3e-79 300.1 198 75.8
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 1.7e-79 299.7 197 74.6
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 1.7e-79 299.7 201 73.6
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.7e-79 299.7 202 75.2
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 2.3e-79 299.3 200 74.0
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 3.9e-79 298.5 198 75.3
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 6.6e-79 297.7 200 72.0
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 6.6e-79 297.7 200 72.5
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 6.6e-79 297.7 198 76.3
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 8.6e-79 297.4 193 74.1
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 8.6e-79 297.4 202 71.8
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 8.6e-79 297.4 202 71.3
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 8.6e-79 297.4 202 71.3
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 8.6e-79 297.4 202 71.3
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 8.6e-79 297.4 202 71.3
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.1e-78 297.0 212 71.7
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 1.9e-78 296.2 198 73.2
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 1.9e-78 296.2 202 72.8
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 1.9e-78 296.2 194 75.3
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 3.3e-78 295.4 202 70.8
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 4.3e-78 295.0 202 71.8
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.3e-78 295.0 181 80.1
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 7.3e-78 294.3 204 75.0
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 9.6e-78 293.9 182 80.2
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 2.8e-77 292.4 202 71.3
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 4.7e-77 291.6 193 74.6
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 6.2e-77 291.2 201 76.1
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.2e-77 291.2 200 73.0
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 3.1e-76 288.9 205 68.8
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 4.0e-76 288.5 202 71.8
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.2e-76 288.1 200 71.5
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 5.2e-76 288.1 329 51.7
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 6.8e-76 287.7 197 72.1
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.5e-75 286.6 201 72.6
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 1.5e-75 286.6 202 68.3
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 7.6e-75 284.3 200 70.5
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.3e-74 283.5 200 72.5
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 1.3e-74 283.5 195 71.3
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 3.8e-74 282.0 199 69.8
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 4.9e-74 281.6 202 70.8
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 1.1e-73 280.4 201 70.6
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 1.6e-72 276.6 186 74.2
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 2.1e-72 276.2 197 69.0
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 2.1e-72 276.2 198 69.7
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 2.7e-72 275.8 200 70.5
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 2.7e-72 275.8 196 69.9
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 6.0e-72 274.6 198 66.7
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 1.0e-71 273.9 200 70.0
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 1.7e-71 273.1 200 70.0
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 3.9e-71 271.9 198 69.7
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 3.3e-70 268.9 185 69.2
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 4.3e-70 268.5 181 74.6
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 3.6e-69 265.4 184 71.7
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 4.8e-69 265.0 201 69.7
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 1.8e-68 263.1 175 76.6
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 5.3e-68 261.5 189 74.1
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 5.8e-67 258.1 195 62.6
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.2e-66 256.1 181 70.7
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 8.4e-66 254.2 199 64.8
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 8.4e-66 254.2 257 56.8
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.1e-64 249.6 221 60.2
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 4.3e-62 241.9 238 57.6
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 4.0e-60 235.3 224 58.5
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 6.0e-56 221.5 167 68.9
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.3e-55 220.3 235 54.5
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.3e-53 213.8 199 54.3
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 2.0e-51 206.5 228 53.1
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 4.5e-51 205.3 197 52.3
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 1.2e-48 197.2 128 77.3
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 1.0e-47 194.1 112 85.7
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 6.3e-45 184.9 119 76.5
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 6.9e-44 181.4 112 78.6
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 1.5e-43 180.3 195 50.3
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.6e-43 179.5 116 79.3
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 6.5e-42 174.9 199 48.7
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 2.5e-38 162.9 184 46.7
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 4.1e-36 155.6 151 52.3
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 9.0e-36 154.5 112 67.9
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.7e-32 142.9 94 71.3
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 1.0e-31 141.0 85 80.0
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 5.1e-31 138.7 204 41.2
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 6.7e-31 138.3 103 68.9
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.3e-30 136.0 83 80.7
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 7.4e-30 134.8 83 80.7
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 9.7e-30 134.4 87 74.7
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 9.1e-28 127.9 128 54.7
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.2e-27 127.5 84 72.6
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 1.2e-27 127.5 207 38.6
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 1.6e-24 117.1 130 49.2
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 2.7e-24 116.3 103 61.2
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 5.7e-22 108.6 74 75.7
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.7e-21 107.1 77 68.8
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.2e-21 106.7 68 76.5
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.0e-20 101.7 72 69.4
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 9.1e-20 101.3 196 34.2
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 2.2e-18 96.7 74 60.8
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 8.5e-18 94.7 70 62.9
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 1.9e-17 93.6 193 34.2
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 5.5e-17 92.0 114 48.2
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 1.6e-16 90.5 75 60.0
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 6.1e-16 88.6 105 46.7
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.4e-12 76.6 45 77.8
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 4.5e-11 72.4 49 65.3
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 1.9e-09 67.0 47 66.0
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 2.7e-08 63.2 53 60.4
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 1.4e-07 60.8 42 66.7
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 4.0e-07 59.3 70 42.9
TAR624G1239 Trochodendron aralioides HOM05D049658 ORTHO05D051498 1.2e-06 57.8 42 69.0
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 4.4e-06 55.8 40 60.0
TAR626G1697 Trochodendron aralioides HOM05D049658 ORTHO05D051498 9.8e-06 54.7 38 71.1


User provided reference genes

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