Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 0.0e+00 1639.8 835 100.0
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 2.2e-282 975.7 873 61.6
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 3.8e-282 974.9 875 60.2
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 3.9e-279 964.9 872 59.6
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 3.8e-274 948.3 827 62.4
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.5e-273 945.7 817 61.2
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 1.6e-272 943.0 862 59.3
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 2.1e-272 942.6 871 58.9
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 4.7e-272 941.4 872 60.0
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 1.5e-270 936.4 875 58.4
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 2.6e-270 935.6 875 58.5
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 9.7e-270 933.7 840 60.6
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 8.2e-269 930.6 976 55.1
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 2.4e-268 929.1 857 59.7
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.3e-266 923.3 822 60.9
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 6.5e-266 921.0 873 57.6
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 5.5e-265 917.9 854 58.9
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.7e-264 915.6 792 62.1
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 6.1e-264 914.4 854 59.4
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 6.1e-264 914.4 875 58.1
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 2.3e-263 912.5 847 58.7
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 4.4e-262 908.3 867 57.8
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.7e-261 905.2 867 57.8
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.4e-260 903.3 870 57.8
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.4e-260 903.3 872 57.9
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 7.0e-260 901.0 864 57.9
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.0e-259 899.4 869 56.0
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 3.5e-259 898.7 862 57.9
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 4.5e-259 898.3 852 58.3
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 6.5e-258 894.4 886 55.5
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.5e-257 893.3 866 56.0
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.4e-255 886.7 880 56.9
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 3.0e-255 885.6 875 56.6
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 9.8e-254 880.6 858 55.9
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.3e-253 880.2 866 55.3
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 8.3e-253 877.5 861 56.6
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 1.1e-252 877.1 759 62.1
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 2.4e-252 875.9 887 55.6
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 5.4e-252 874.8 864 55.7
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 1.6e-251 873.2 867 56.7
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.6e-251 873.2 870 56.0
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 2.7e-251 872.5 885 55.8
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 5.9e-251 871.3 873 56.5
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 5.0e-250 868.2 838 57.6
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 8.6e-250 867.5 908 54.3
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 3.3e-249 865.5 868 55.8
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 1.8e-247 859.8 866 55.0
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 2.2e-245 852.8 755 61.2
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 2.9e-245 852.4 871 55.1
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 2.9e-245 852.4 948 52.6
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 4.9e-245 851.7 867 53.6
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 6.4e-245 851.3 869 55.0
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.4e-244 850.1 872 53.8
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 1.8e-244 849.7 871 54.8
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 2.4e-244 849.4 873 54.5
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 3.2e-244 849.0 865 54.5
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 3.2e-244 849.0 878 53.8
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 5.4e-244 848.2 868 53.7
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 1.6e-243 846.7 865 54.2
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 2.7e-243 845.9 852 54.5
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 3.5e-243 845.5 875 55.2
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 2.3e-242 842.8 868 54.7
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.0e-242 841.6 844 54.5
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 5.0e-242 841.6 839 56.4
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 1.1e-241 840.5 883 53.7
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 3.3e-241 839.0 873 54.2
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 3.3e-241 839.0 865 54.3
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 3.3e-241 839.0 876 54.2
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 2.1e-240 836.3 873 53.3
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 4.7e-240 835.1 868 53.7
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 4.7e-240 835.1 879 53.8
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 5.2e-239 831.6 867 53.5
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 1.5e-238 830.1 846 55.3
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 1.7e-237 826.6 870 54.9
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 2.9e-237 825.9 852 54.5
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 4.9e-237 825.1 918 51.7
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 1.1e-236 823.9 898 51.9
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 2.4e-236 822.8 722 62.2
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 2.7e-235 819.3 866 53.5
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 4.6e-235 818.5 863 54.3
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 4.6e-235 818.5 861 52.8
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 1.0e-234 817.4 863 52.8
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 1.3e-234 817.0 847 55.7
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 1.1e-233 813.9 860 53.1
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 8.1e-232 807.7 859 53.6
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 3.4e-230 802.4 870 52.3
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 4.4e-230 802.0 765 57.4
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 3.7e-229 798.9 950 49.3
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 1.9e-228 796.6 745 59.5
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 2.4e-228 796.2 860 52.9
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 4.1e-228 795.4 863 51.6
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 3.0e-226 789.3 867 52.8
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 3.0e-226 789.3 861 53.2
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 1.5e-225 786.9 865 51.9
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 3.3e-225 785.8 865 51.8
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 4.3e-225 785.4 865 52.1
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 5.2e-223 778.5 861 52.3
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 3.2e-220 769.2 863 50.4
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 2.7e-219 766.1 872 49.5
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 2.7e-219 766.1 903 49.6
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 5.1e-218 761.9 1030 45.3
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 2.1e-216 756.5 864 51.4
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.8e-215 753.4 785 54.1
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 3.4e-214 749.2 724 55.2
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 7.6e-214 748.0 866 48.4
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 3.8e-213 745.7 872 48.4
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.4e-207 726.5 832 49.3
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 2.0e-206 723.4 870 50.1
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 7.6e-206 721.5 849 48.6
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 8.4e-205 718.0 878 47.9
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 4.2e-204 715.7 733 55.9
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 9.6e-201 704.5 801 50.3
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 1.1e-196 691.0 610 60.2
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 6.0e-195 685.3 790 48.6
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 3.3e-193 679.5 725 50.6
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 7.6e-190 668.3 844 46.7
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 2.6e-182 643.3 556 61.3
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 4.2e-180 636.0 854 45.9
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 5.5e-180 635.6 917 42.5
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 1.1e-175 621.3 845 44.4
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 9.7e-169 598.2 816 44.6
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 8.2e-168 595.1 553 57.9
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 3.4e-166 589.7 575 56.5
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 3.2e-164 583.2 873 43.3
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 5.3e-159 565.8 869 41.8
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.5e-156 557.8 816 44.2
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 3.2e-156 556.6 1082 36.4
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.6e-155 554.3 441 66.0
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 3.1e-151 540.0 748 45.3
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 5.2e-146 522.7 725 42.8
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 6.1e-131 472.6 829 36.9
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 6.8e-130 469.2 572 46.5
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 3.4e-121 440.3 614 44.8
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 9.9e-105 385.6 811 34.2
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 1.3e-104 385.2 545 42.9
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 3.4e-97 360.5 636 36.3
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 1.5e-92 345.1 721 33.1
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 3.9e-85 320.5 435 47.1
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.9e-84 318.2 367 51.0
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 3.5e-70 270.8 317 49.5
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 4.3e-68 263.8 262 56.5
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.1e-60 239.2 285 49.5
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.8e-51 208.0 245 48.2
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 8.5e-48 196.4 193 61.7
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 1.0e-37 162.9 138 61.6
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 1.3e-35 156.0 169 58.0
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 8.3e-35 153.3 390 32.8
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 1.2e-33 149.4 381 34.9
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 1.2e-33 149.4 381 34.9
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-26 126.3 178 44.9
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-26 126.3 178 44.9
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 3.0e-21 108.2 323 26.6
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 4.4e-20 104.4 175 40.0
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 1.8e-18 99.0 183 37.7
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 7.0e-18 97.1 110 48.2
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 3.5e-17 94.7 187 34.8
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 6.6e-16 90.5 196 35.7
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 1.6e-14 85.9 126 43.7
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 4.7e-14 84.3 58 74.1
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 2.3e-13 82.0 102 49.0
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 2.0e-12 79.0 163 33.1
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 3.2e-10 71.6 124 39.5
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 7.0e-10 70.5 72 52.8
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 4.6e-09 67.8 58 55.2
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 1.3e-08 66.2 36 91.7
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-08 65.5 209 23.9
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 5.0e-08 64.3 58 55.2
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 6.6e-08 63.9 69 49.3
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 7.3e-07 60.5 47 57.4
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 8.0e-06 57.0 86 44.2


User provided reference genes

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