Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 4.7e-172 607.8 324 100.0
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 3.4e-101 372.5 327 66.4
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 5.7e-101 371.7 321 67.0
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 1.7e-100 370.2 325 66.2
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.7e-100 370.2 327 66.7
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 1.4e-99 367.1 325 64.3
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 2.7e-98 362.8 280 70.4
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 7.7e-98 361.3 263 73.4
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 1.3e-97 360.5 325 64.6
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 2.3e-97 359.8 269 71.7
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 2.3e-97 359.8 336 64.3
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 5.0e-97 358.6 319 65.8
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 6.6e-97 358.2 260 73.1
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 8.6e-97 357.8 325 64.3
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 5.5e-96 355.1 265 69.4
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 7.2e-96 354.8 267 71.5
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 2.1e-95 353.2 330 60.6
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 2.1e-95 353.2 324 62.0
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 2.8e-95 352.8 251 75.7
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 3.6e-95 352.4 297 64.0
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 8.0e-95 351.3 235 77.9
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 8.0e-95 351.3 281 66.9
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 1.0e-94 350.9 330 62.7
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 1.0e-94 350.9 250 75.2
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 1.4e-94 350.5 244 75.4
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 1.4e-94 350.5 268 71.6
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 1.8e-94 350.1 257 72.0
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 3.0e-94 349.4 257 72.8
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 4.0e-94 349.0 252 73.8
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 1.2e-93 347.4 312 61.9
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 1.5e-93 347.1 239 75.7
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 2.0e-93 346.7 313 62.3
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 2.0e-93 346.7 313 62.9
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 3.4e-93 345.9 253 72.3
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 3.4e-93 345.9 329 60.8
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 4.4e-93 345.5 321 64.5
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 5.7e-93 345.1 231 76.2
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 5.7e-93 345.1 313 61.7
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 7.5e-93 344.7 273 68.5
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 7.5e-93 344.7 297 63.6
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 1.7e-92 343.6 314 62.1
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 1.7e-92 343.6 262 67.6
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 3.7e-92 342.4 315 63.5
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 4.9e-92 342.0 249 74.3
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 6.3e-92 341.7 276 67.4
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 8.3e-92 341.3 305 63.3
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 1.4e-91 340.5 330 60.9
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 3.2e-91 339.3 255 70.6
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 2.7e-90 336.3 330 60.0
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 3.5e-90 335.9 252 70.6
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 2.3e-89 333.2 224 75.9
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 2.3e-89 333.2 224 76.3
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 2.9e-89 332.8 299 62.9
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 3.9e-89 332.4 323 58.8
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 6.6e-89 331.6 324 57.4
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 1.1e-88 330.9 277 64.6
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.5e-88 330.5 329 58.4
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 1.9e-88 330.1 278 64.4
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 2.5e-88 329.7 235 74.0
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 3.3e-88 329.3 277 64.3
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 5.6e-88 328.6 321 60.1
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 2.1e-87 326.6 286 63.6
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 6.1e-87 325.1 227 73.6
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 1.8e-86 323.6 224 74.1
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 3.1e-86 322.8 224 74.6
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 4.0e-86 322.4 224 74.1
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 4.0e-86 322.4 224 74.1
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 5.2e-86 322.0 318 59.4
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 8.9e-86 321.2 323 58.8
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 1.5e-85 320.5 313 60.1
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 3.4e-85 319.3 237 70.5
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 7.5e-85 318.2 258 67.4
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 9.8e-85 317.8 329 57.4
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 1.3e-84 317.4 224 73.2
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 1.3e-84 317.4 224 73.2
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 1.3e-84 317.4 208 76.4
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 1.7e-84 317.0 252 67.5
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 1.7e-84 317.0 318 57.5
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 3.7e-84 315.8 224 72.8
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 4.9e-84 315.5 312 60.9
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 1.1e-83 314.3 240 70.0
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.4e-83 313.9 203 78.8
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 3.2e-83 312.8 256 65.6
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 4.1e-83 312.4 325 58.2
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 4.1e-83 312.4 244 67.2
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 7.0e-83 311.6 223 74.9
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 9.2e-83 311.2 257 68.1
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 1.2e-82 310.8 257 66.1
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 2.7e-82 309.7 287 61.7
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 6.0e-82 308.5 239 69.0
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 1.0e-81 307.8 264 62.5
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 1.0e-81 307.8 197 76.6
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 1.3e-81 307.4 231 70.6
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 1.7e-81 307.0 306 57.2
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 1.5e-80 303.9 198 77.3
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 1.5e-80 303.9 235 70.2
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 2.1e-79 300.1 199 79.4
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 4.7e-79 298.9 266 60.9
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 6.8e-78 295.0 218 67.9
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 1.2e-77 294.3 206 72.8
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 7.1e-75 285.0 299 57.5
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 1.6e-74 283.9 322 53.1
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 3.5e-74 282.7 232 64.7
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 1.8e-70 270.4 229 61.1
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 2.3e-65 253.4 199 63.3
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 3.1e-62 243.0 222 55.9
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 4.0e-62 242.7 226 55.3
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 1.3e-60 237.7 302 46.7
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 4.2e-59 232.6 197 57.4
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 1.6e-55 220.7 206 55.3
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 2.4e-54 216.9 150 71.3
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 9.9e-53 211.5 162 66.7
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 4.6e-34 149.4 110 66.4
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 3.9e-33 146.4 177 46.9
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 9.6e-32 141.7 135 58.5
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 2.9e-28 130.2 180 46.1
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 3.2e-19 100.1 73 71.2
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 7.2e-19 99.0 73 71.2
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 2.5e-11 73.9 50 74.0
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 2.0e-08 64.3 114 43.9
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 9.7e-08 62.0 54 61.1


User provided reference genes

Program Settings