Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.6e-219 765.8 377 100.0
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 4.9e-152 541.6 360 72.8
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 5.4e-151 538.1 371 68.7
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 5.9e-150 534.6 358 71.2
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 8.6e-149 530.8 353 70.8
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 2.0e-145 519.6 358 67.6
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 9.8e-145 517.3 352 70.5
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.9e-144 515.8 374 65.5
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 4.9e-144 515.0 372 65.6
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.2e-142 510.4 354 68.9
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 2.7e-142 509.2 353 69.1
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 3.5e-142 508.8 354 69.8
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.0e-141 507.3 371 66.0
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 3.9e-141 505.4 352 67.9
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 3.3e-140 502.3 354 68.4
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.3e-140 502.3 368 65.2
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 4.3e-140 501.9 378 64.3
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.1e-139 499.6 354 66.7
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.7e-139 498.4 353 67.7
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 4.0e-138 495.4 372 64.2
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 1.5e-137 493.4 355 65.6
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 2.0e-137 493.0 371 64.2
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 2.6e-137 492.7 358 64.5
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 2.6e-137 492.7 354 65.5
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 3.4e-137 492.3 353 66.9
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 2.2e-136 489.6 374 62.3
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 2.2e-136 489.6 374 62.0
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 6.4e-136 488.0 352 64.8
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.4e-136 488.0 352 64.8
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.9e-135 486.5 352 64.5
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 1.9e-135 486.5 360 64.7
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.5e-134 482.3 357 63.6
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.6e-134 481.9 357 63.6
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 7.8e-134 481.1 355 64.8
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 5.1e-133 478.4 354 63.8
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 6.6e-133 478.0 354 63.6
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 1.1e-132 477.2 360 63.3
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 2.5e-132 476.1 360 63.3
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.5e-132 476.1 360 63.6
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 4.3e-132 475.3 359 62.7
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.2e-131 473.8 360 63.6
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 2.8e-131 472.6 374 59.6
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 4.7e-131 471.9 352 63.4
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 4.7e-131 471.9 353 62.6
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 6.2e-131 471.5 358 63.4
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 8.1e-131 471.1 360 62.2
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 3.1e-130 469.2 352 63.9
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.1e-130 469.2 340 65.3
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 8.9e-130 467.6 352 63.6
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 2.0e-129 466.5 360 63.9
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.7e-128 463.4 353 63.5
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 2.9e-128 462.6 361 61.8
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 4.9e-128 461.8 351 63.5
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 4.9e-128 461.8 352 63.9
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.9e-127 459.9 361 61.8
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 3.2e-127 459.1 365 59.5
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 4.1e-127 458.8 359 61.6
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 5.4e-127 458.4 337 65.3
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 9.2e-127 457.6 325 67.1
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 1.2e-126 457.2 354 64.4
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 1.2e-126 457.2 374 58.6
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 1.6e-126 456.8 325 66.2
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.6e-126 456.8 353 62.9
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 2.7e-126 456.1 351 61.3
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 3.5e-126 455.7 352 62.2
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 3.5e-126 455.7 354 63.8
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 6.0e-126 454.9 354 63.3
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 2.3e-125 453.0 356 63.8
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 3.9e-125 452.2 359 60.4
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 1.1e-124 450.7 352 61.1
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.1e-124 450.7 354 63.8
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.1e-124 450.7 368 59.5
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 1.9e-124 449.9 355 60.8
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 5.6e-124 448.4 359 60.4
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 7.3e-124 448.0 354 63.3
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 1.6e-123 446.8 325 65.2
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 1.6e-123 446.8 361 60.7
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 2.1e-123 446.4 354 63.0
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 2.1e-123 446.4 354 63.0
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 2.8e-123 446.0 359 58.5
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 3.6e-123 445.7 355 60.0
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 2.4e-122 443.0 351 63.2
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 1.5e-121 440.3 355 59.7
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 9.9e-121 437.6 355 59.4
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.3e-120 437.2 359 58.5
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 1.7e-120 436.8 371 56.9
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 2.9e-120 436.0 373 56.0
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 4.9e-120 435.3 334 62.6
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 4.9e-120 435.3 360 59.2
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 6.4e-120 434.9 324 64.8
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 3.5e-118 429.1 359 59.9
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 4.6e-118 428.7 371 56.1
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 7.8e-118 427.9 371 56.1
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.7e-117 426.8 360 57.2
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 3.9e-117 425.6 371 55.5
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 5.1e-117 425.2 406 55.4
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 6.6e-117 424.9 360 56.4
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 5.6e-116 421.8 359 59.3
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 1.3e-115 420.6 307 64.8
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 1.6e-115 420.2 361 57.9
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 1.1e-114 417.5 343 56.6
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.5e-113 413.7 360 57.8
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 7.6e-113 411.4 342 57.6
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 9.3e-111 404.4 385 53.8
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 9.3e-111 404.4 356 57.0
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 1.2e-110 404.1 346 55.5
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 2.3e-109 399.8 359 57.4
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 5.1e-109 398.7 352 55.4
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 1.1e-108 397.5 353 54.7
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 3.3e-108 396.0 361 53.7
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 3.3e-108 396.0 358 56.1
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 7.4e-108 394.8 328 59.1
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 9.9e-105 384.4 350 54.0
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 1.8e-101 373.6 327 56.9
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-100 370.9 358 53.9
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 1.5e-100 370.5 380 53.4
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 3.4e-97 359.4 387 48.3
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.3e-91 340.9 352 52.8
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 8.2e-91 338.2 357 51.8
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 1.8e-85 320.5 397 45.8
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 3.9e-85 319.3 228 67.1
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 2.5e-84 316.6 354 46.3
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 2.9e-72 276.6 262 54.2
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.6e-70 270.8 200 65.0
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 2.0e-65 253.8 294 44.9
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 5.0e-64 249.2 317 42.0
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 3.0e-61 240.0 225 54.7
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 5.0e-56 222.6 130 79.2
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 8.3e-51 205.3 148 62.8
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 5.0e-48 196.1 315 40.6
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 2.1e-38 164.1 271 36.9
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 5.2e-37 159.5 110 68.2
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 5.7e-36 156.0 128 60.9
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 8.6e-32 142.1 193 40.4
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 5.6e-31 139.4 368 30.4
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.4e-29 134.8 116 59.5
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 9.8e-28 128.6 214 38.3
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-26 124.8 87 63.2
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 2.0e-25 120.9 81 65.4
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 1.0e-24 118.6 144 46.5
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 1.7e-24 117.9 101 55.4
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.7e-24 117.9 81 69.1
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 6.6e-24 115.9 144 45.1
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 8.6e-24 115.5 101 54.5
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 1.5e-23 114.8 214 36.4
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 1.5e-23 114.8 132 44.7
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 4.7e-22 109.8 76 63.2
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 8.1e-22 109.0 129 45.0
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-21 108.6 76 63.2
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 3.1e-21 107.1 90 62.2
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 2.2e-19 100.9 218 36.2
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 3.7e-19 100.1 100 51.0
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 5.4e-18 96.3 78 53.8
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 7.1e-18 95.9 71 60.6
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.7e-17 94.0 54 68.5
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 6.0e-17 92.8 56 73.2
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 6.0e-17 92.8 116 47.4
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 7.8e-17 92.4 102 49.0
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 7.3e-15 85.9 56 62.5
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 6.4e-11 72.8 182 29.1
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 6.4e-11 72.8 177 29.4
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 6.0e-09 66.2 53 58.5
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.0e-08 65.5 177 28.2
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 2.3e-08 64.3 53 54.7
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 6.6e-08 62.8 68 45.6
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 7.3e-07 59.3 51 54.9
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 2.1e-06 57.8 50 52.0
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 4.7e-06 56.6 50 54.0


User provided reference genes

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