Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001490 Simmondsia chinensis HOM05D006923 ORTHO05D008697 1.6e-194 682.6 341 100.0
MD13G1084200 Malus domestica HOM05D006923 ORTHO05D008697 1.5e-96 357.1 269 70.6
GSVIVG01020133001 Vitis vinifera HOM05D006923 ORTHO05D008697 1.5e-96 357.1 267 70.8
TAR629G1985 Trochodendron aralioides HOM05D006923 ORTHO05D008697 4.5e-96 355.5 267 68.2
AUR62039449 Chenopodium quinoa HOM05D006923 ORTHO05D008697 1.3e-95 354.0 273 70.0
Prupe.1G262600 Prunus persica HOM05D006923 ORTHO05D008697 2.9e-95 352.8 268 69.8
Cpa.g.sc5.315 Carica papaya HOM05D006923 ORTHO05D008697 1.1e-94 350.9 269 68.0
EL10Ac6g13089 Beta vulgaris HOM05D006923 ORTHO05D008697 2.5e-94 349.7 289 67.8
Nn4g22963 Nelumbo nucifera HOM05D006923 ORTHO05D008697 3.2e-94 349.4 269 68.0
QL03p067501 Quercus lobata HOM05D006923 ORTHO05D008697 5.5e-94 348.6 230 75.7
Atru.chr11.1922 Acer truncatum HOM05D006923 ORTHO05D008697 3.5e-93 345.9 271 67.2
Hund25304 Selenicereus undatus HOM05D006923 ORTHO05D008697 3.5e-93 345.9 285 66.0
CiPaw.06G077400 Carya illinoinensis HOM05D006923 ORTHO05D008697 6.0e-93 345.1 253 70.0
Dinv31139 Davidia involucrata HOM05D006923 ORTHO05D008697 7.9e-93 344.7 267 68.5
Gohir.A05G320000 Gossypium hirsutum HOM05D006923 ORTHO05D008697 3.0e-92 342.8 267 67.4
TPR.G26715 Trifolium pratense HOM05D006923 ORTHO05D008697 1.1e-91 340.9 269 64.3
Sopen04g001110 Solanum pennellii HOM05D006923 ORTHO05D008697 1.9e-91 340.1 268 66.4
MSTRG.649 Avicennia marina HOM05D006923 ORTHO05D008697 3.3e-91 339.3 267 67.4
Gorai.009G345900 Gossypium raimondii HOM05D006923 ORTHO05D008697 4.3e-91 339.0 271 66.8
PGR102G0681 Punica granatum HOM05D006923 ORTHO05D008697 4.3e-91 339.0 273 67.4
Solyc04g005090.4 Solanum lycopersicum HOM05D006923 ORTHO05D008697 7.4e-91 338.2 267 66.3
COL.COLO4_36266 Corchorus olitorius HOM05D006923 ORTHO05D008697 9.6e-91 337.8 270 68.5
Aqoxy3G03167 Aquilegia oxysepala HOM05D006923 ORTHO05D008697 1.3e-90 337.4 231 73.2
Cfa009080 Carpinus fangiana HOM05D006923 ORTHO05D008697 2.1e-90 336.7 235 71.5
Gohir.D05G322300 Gossypium hirsutum HOM05D006923 ORTHO05D008697 2.1e-90 336.7 271 66.4
Lj2g0018338 Lotus japonicus HOM05D006923 ORTHO05D008697 3.7e-90 335.9 277 62.1
RcHm_v2.0_Chr4g0444951 Rosa chinensis HOM05D006923 ORTHO05D008697 1.1e-89 334.3 251 70.9
Manes.05G093700 Manihot esculenta HOM05D006923 ORTHO05D008697 1.8e-89 333.6 267 67.0
PGSC0003DMG400001928 Solanum tuberosum HOM05D006923 ORTHO05D008697 2.4e-89 333.2 270 65.6
Potri.008G191900 Populus trichocarpa HOM05D006923 ORTHO05D008697 4.1e-89 332.4 246 69.9
SGA_v2.0_scaffold166G38306 Striga asiatica HOM05D006923 ORTHO05D008697 4.1e-89 332.4 268 64.6
HanXRQChr09g0267151 Helianthus annuus HOM05D006923 ORTHO05D008697 6.9e-89 331.6 268 64.9
Lj6C798T8 Lonicera japonica HOM05D006923 ORTHO05D008697 9.0e-89 331.3 280 64.6
Migut.L01372 Erythranthe guttata HOM05D006923 ORTHO05D008697 1.2e-88 330.9 267 66.7
Phvul.002G078400 Phaseolus vulgaris HOM05D006923 ORTHO05D008697 1.2e-88 330.9 273 62.6
Ciclev10032274m.g Citrus clementina HOM05D006923 ORTHO05D008697 2.6e-88 329.7 266 65.0
Actinidia24653 Actinidia chinensis HOM05D006923 ORTHO05D008697 3.4e-88 329.3 267 65.2
ClCG05G024880 Citrullus lanatus HOM05D006923 ORTHO05D008697 3.4e-88 329.3 239 69.0
Peaxi162Scf00266g00035 Petunia axillaris HOM05D006923 ORTHO05D008697 3.4e-88 329.3 223 73.1
arahy.Tifrunner.gnm1.ann1.NUE0XS Arachis hypogaea HOM05D006923 ORTHO05D008697 7.6e-88 328.2 238 68.1
PSO591G0274 Papaver somniferum HOM05D006923 ORTHO05D008697 1.3e-87 327.4 275 62.9
FvH4_4g35320 Fragaria vesca HOM05D006923 ORTHO05D008697 1.7e-87 327.0 269 66.5
FAN12G2795 Fragaria x ananassa HOM05D006923 ORTHO05D008697 1.7e-87 327.0 269 66.5
Psat2g114680 Pisum sativum HOM05D006923 ORTHO05D008697 1.7e-87 327.0 275 62.2
Sed0028145 Sechium edule HOM05D006923 ORTHO05D008697 1.7e-87 327.0 223 73.1
Ca_05074_v3 Cicer arietinum L. HOM05D006923 ORTHO05D008697 2.2e-87 326.6 289 59.5
FAN22G1061 Fragaria x ananassa HOM05D006923 ORTHO05D008697 3.8e-87 325.9 274 67.5
FAN07G0582 Fragaria x ananassa HOM05D006923 ORTHO05D008697 6.5e-87 325.1 274 67.2
CAN.G25.5 Capsicum annuum HOM05D006923 ORTHO05D008697 8.5e-87 324.7 277 64.6
Thecc.02G238100 Theobroma cacao HOM05D006923 ORTHO05D008697 1.1e-86 324.3 268 64.6
Glyma.02G026400 Glycine max HOM05D006923 ORTHO05D008697 1.9e-86 323.6 222 70.7
Rhsim12G0127000 Rhododendron simsii HOM05D006923 ORTHO05D008697 1.9e-86 323.6 234 68.8
THA.LOC104819679 Tarenaya hassleriana HOM05D006923 ORTHO05D008697 2.5e-86 323.2 275 64.4
CSS0003222 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 5.5e-86 322.0 273 63.4
CsaV3_5G032010 Cucumis sativus L. HOM05D006923 ORTHO05D008697 9.3e-86 321.2 273 61.9
Sabra08G0145400 Salix brachista HOM05D006923 ORTHO05D008697 2.1e-85 320.1 224 72.3
Cc11_g13930 Coffea canephora HOM05D006923 ORTHO05D008697 6.1e-85 318.5 248 66.1
unitig_26.g10329 Utricularia gibba HOM05D006923 ORTHO05D008697 2.3e-84 316.6 267 62.2
arahy.Tifrunner.gnm1.ann1.EW3DBQ Arachis hypogaea HOM05D006923 ORTHO05D008697 3.0e-84 316.2 237 67.1
Carub.0002s0542 Capsella rubella HOM05D006923 ORTHO05D008697 3.0e-84 316.2 260 63.8
CDE04G0355 Ceratophyllum demersum HOM05D006923 ORTHO05D008697 1.5e-83 313.9 228 67.1
Thhalv10023990m.g Eutrema salsugineum HOM05D006923 ORTHO05D008697 1.5e-83 313.9 257 64.6
Lalb_Chr16g0382621 Lupinus albus HOM05D006923 ORTHO05D008697 1.9e-83 313.5 223 70.0
A01p28870 Brassica napus HOM05D006923 ORTHO05D008697 2.5e-83 313.2 251 64.1
CSS0013336 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 5.7e-83 312.0 223 70.0
BcaC06g31796 Brassica carinata HOM05D006923 ORTHO05D008697 9.7e-83 311.2 254 64.2
ECA246G0266 Erigeron canadensis HOM05D000793 ORTHO05D000783 1.3e-82 310.8 254 64.6
CANSAT01G2170 Cannabis sativa HOM05D006923 ORTHO05D008697 2.2e-82 310.1 275 62.5
AT1G59840 Arabidopsis thaliana HOM05D006923 ORTHO05D008697 3.7e-82 309.3 269 61.7
Sp2g04730 Schrenkiella parvula HOM05D006923 ORTHO05D008697 3.7e-82 309.3 259 62.2
BraA01t03022Z Brassica rapa HOM05D006923 ORTHO05D008697 4.8e-82 308.9 251 63.3
BolC1t03615H Brassica oleracea HOM05D006923 ORTHO05D008697 6.3e-82 308.5 270 60.4
Aa31LG2G10350 Aethionema arabicum HOM05D006923 ORTHO05D008697 8.2e-82 308.1 256 63.3
BcaC09g49455 Brassica carinata HOM05D006923 ORTHO05D008697 1.1e-81 307.8 269 61.7
vmacro16302 Vaccinium macrocarpon HOM05D006923 ORTHO05D008697 5.3e-81 305.4 272 62.1
AL2G16930 Arabidopsis lyrata HOM05D006923 ORTHO05D008697 6.9e-81 305.1 261 62.1
Nitab4.5_0005168g0020 Nicotiana tabacum HOM05D006923 ORTHO05D008697 9.0e-81 304.7 279 60.2
BcaB04g20234 Brassica carinata HOM05D006923 ORTHO05D008697 2.6e-80 303.1 250 63.6
BcaNung06340 Brassica carinata HOM05D006923 ORTHO05D008697 2.6e-80 303.1 245 65.3
SalBow2G1484 Salvia bowleyana HOM05D006923 ORTHO05D008697 5.9e-80 302.0 273 60.8
SalBow2G2758 Salvia bowleyana HOM05D006923 ORTHO05D008697 5.9e-80 302.0 273 60.8
C01p36540 Brassica napus HOM05D006923 ORTHO05D008697 1.7e-79 300.4 221 67.9
Lsat_1_v5_gn_7_91800 Lactuca sativa HOM05D006923 ORTHO05D008697 6.5e-79 298.5 254 63.8
Aa31LG1G14870 Aethionema arabicum HOM05D006923 ORTHO05D008697 8.5e-79 298.1 252 62.7
AUR62026532 Chenopodium quinoa HOM05D006923 ORTHO05D008697 1.6e-77 293.9 257 62.3
TWI18G0575 Tripterygium wilfordii HOM05D006923 ORTHO05D008697 2.1e-77 293.5 269 59.9
Medtr5g037050 Medicago truncatula HOM05D006923 ORTHO05D008697 7.9e-77 291.6 262 59.9
Os04g0650500 Oryza sativa ssp. japonica HOM05D006923 ORTHO05D008697 1.0e-76 291.2 236 61.9
HPP92_026426 Vanilla planifolia HOM05D006923 ORTHO05D008697 6.7e-76 288.5 227 63.4
Zm00001eb068300 Zea mays HOM05D006923 ORTHO05D008697 9.7e-75 284.6 227 63.0
VMungo1215G1603 Vigna mungo HOM05D006923 ORTHO05D008697 7.7e-72 275.0 246 58.5
ATR0624G013 Amborella trichopoda HOM05D006923 ORTHO05D008697 1.7e-71 273.9 220 59.5
Haze_12112 Corylus avellana HOM05D006923 ORTHO05D008697 2.3e-68 263.5 174 75.9
MELO3C012038.2 Cucumis melo HOM05D006923 ORTHO05D008697 1.1e-67 261.2 249 57.8
CARHR053250 Cardamine hirsuta HOM05D006923 ORTHO05D008697 4.2e-62 242.7 176 68.8
Pp3c3_23340 Physcomitrium patens HOM05D006923 ORTHO05D008697 3.7e-58 229.6 220 52.7
Duzib268G0289 Durio zibethinus HOM05D006923 ORTHO05D008697 1.6e-53 214.2 270 50.4
Mapoly0001s0231 Marchantia polymorpha HOM05D006923 ORTHO05D008697 6.8e-52 208.8 212 50.9
CBR_g3926 Chara braunii HOM05D006923 ORTHO05D008697 5.4e-49 199.1 219 42.5
FAN17G2763 Fragaria x ananassa HOM05D006923 ORTHO05D008697 5.2e-44 182.6 273 45.1
MBI17_g35870_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 3.4e-43 179.9 114 75.4
MCO16G195 Micromonas commoda HOM05D006923 ORTHO05D008697 6.1e-37 159.1 227 40.1
Cre08.g382300 Chlamydomonas reinhardtii HOM05D006923 ORTHO05D008697 3.4e-35 153.3 220 37.7
Nitab4.5_0001908g0040 Nicotiana tabacum HOM05D006923 ORTHO05D008697 1.6e-32 144.4 246 40.2
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 8.6e-31 138.7 241 35.3
Sed0022420 Sechium edule HOM05D006923 ORTHO05D008697 5.2e-28 129.4 112 58.9
AagrBONN_evm.TU.Sc2ySwM_117.4092 Anthoceros agrestis HOM05D006923 ORTHO05D008697 1.2e-21 108.2 130 43.8
PSO832G3782 Papaver somniferum HOM05D006923 ORTHO05D008697 1.2e-21 108.2 75 68.0
SEGI_22816 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 4.7e-21 106.3 84 59.5
Hma1.2p1_0289F.1_g114510 Hydrangea macrophylla HOM05D006923 ORTHO05D008697 3.1e-12 77.0 61 62.3
CiPaw.05G144000 Carya illinoinensis HOM05D006923 ORTHO05D008697 8.9e-12 75.5 103 45.6
MBI17_g35869_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 9.9e-11 72.0 65 49.2
A07p27760 Brassica napus HOM05D006923 ORTHO05D024228 3.5e-08 63.5 70 50.0
BraA07t30415Z Brassica rapa HOM05D006923 ORTHO05D024228 3.5e-08 63.5 70 50.0
BraA08t33759Z Brassica rapa HOM05D020796 ORTHO05D024228 7.8e-08 62.4 74 45.9
SEGI_10943 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 5.6e-06 56.2 59 50.8


User provided reference genes

Program Settings