Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 3.3e-110 401.7 204 100.0
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 1.3e-50 203.8 186 57.5
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 1.9e-49 199.9 217 50.2
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 2.1e-48 196.4 227 49.8
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 3.5e-48 195.7 230 49.6
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 7.9e-48 194.5 208 53.8
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 1.1e-46 190.7 216 48.6
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 1.5e-46 190.3 218 51.4
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 2.5e-46 189.5 208 50.0
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 2.5e-46 189.5 216 48.1
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 2.1e-45 186.4 192 52.6
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 3.7e-45 185.7 222 48.6
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 4.1e-44 182.2 202 52.5
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 4.1e-44 182.2 176 53.4
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 9.0e-44 181.0 216 49.5
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 1.5e-43 180.3 205 49.3
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 2.0e-43 179.9 207 46.4
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 2.6e-43 179.5 220 44.1
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 7.6e-43 177.9 215 49.3
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 1.3e-42 177.2 207 46.9
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 1.7e-42 176.8 187 48.7
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 2.9e-42 176.0 221 46.6
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 6.5e-42 174.9 210 47.1
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 6.5e-42 174.9 176 51.7
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 1.1e-41 174.1 202 47.5
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 1.4e-41 173.7 176 50.6
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 1.4e-41 173.7 204 46.6
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 1.9e-41 173.3 212 47.6
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 2.5e-41 172.9 200 50.0
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 7.2e-41 171.4 204 49.5
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 7.2e-41 171.4 203 46.3
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 9.3e-41 171.0 200 47.5
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 9.3e-41 171.0 214 46.3
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 9.3e-41 171.0 203 49.8
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 1.6e-40 170.2 163 53.4
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 1.6e-40 170.2 162 53.7
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 1.6e-40 170.2 219 48.9
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 6.1e-40 168.3 207 47.8
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 1.8e-39 166.8 210 49.0
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 2.3e-39 166.4 180 47.8
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 2.3e-39 166.4 180 47.8
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 3.9e-39 165.6 163 55.2
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 5.1e-39 165.2 201 46.3
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 5.1e-39 165.2 178 51.1
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 8.7e-39 164.5 176 49.4
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 8.7e-39 164.5 178 48.3
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 1.9e-38 163.3 176 48.9
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.9e-38 163.3 178 47.2
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 2.5e-38 162.9 210 47.1
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 2.5e-38 162.9 173 51.4
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 5.7e-38 161.8 176 50.6
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 5.7e-38 161.8 219 42.0
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 9.7e-38 161.0 173 51.4
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 9.7e-38 161.0 202 47.0
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 9.7e-38 161.0 174 51.1
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 1.3e-37 160.6 218 44.5
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 1.3e-37 160.6 205 44.9
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 2.8e-37 159.5 216 43.5
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 3.7e-37 159.1 223 43.0
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 6.3e-37 158.3 172 51.2
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 8.2e-37 157.9 183 50.8
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 1.1e-36 157.5 167 52.7
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 1.4e-36 157.1 164 52.4
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 2.4e-36 156.4 161 51.6
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 2.4e-36 156.4 177 48.0
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 2.4e-36 156.4 210 43.3
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 3.1e-36 156.0 206 45.6
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 4.1e-36 155.6 218 42.2
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 5.3e-36 155.2 183 47.5
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 2.6e-35 152.9 183 47.0
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 3.4e-35 152.5 204 44.6
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 4.5e-35 152.1 162 49.4
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 1.7e-34 150.2 212 42.0
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 2.2e-34 149.8 146 55.5
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 2.9e-34 149.4 177 49.7
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 8.5e-34 147.9 201 44.3
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 1.9e-33 146.7 189 45.0
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 5.5e-33 145.2 201 44.8
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 5.5e-33 145.2 157 48.4
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 7.2e-33 144.8 172 45.9
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 4.6e-32 142.1 191 46.1
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 6.1e-32 141.7 135 54.1
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 2.3e-31 139.8 153 49.7
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 2.3e-31 139.8 253 37.9
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 3.3e-30 136.0 140 48.6
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 4.3e-30 135.6 130 52.3
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 7.4e-30 134.8 185 43.2
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 1.3e-29 134.0 199 43.2
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 1.3e-29 134.0 170 45.3
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 2.2e-29 133.3 176 46.0
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 4.8e-29 132.1 135 54.8
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 2.4e-28 129.8 166 46.4
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 1.0e-26 124.4 169 43.8
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 6.5e-26 121.7 158 44.9
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 1.4e-23 114.0 141 49.6
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 3.0e-23 112.8 131 48.9
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 2.0e-22 110.2 171 36.8
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 1.4e-20 104.0 196 38.3
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 2.4e-20 103.2 195 35.9
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 7.7e-19 98.2 155 39.4
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 2.9e-18 96.3 144 35.4
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 7.2e-17 91.7 149 38.9
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 4.8e-13 79.0 93 47.3
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 1.8e-12 77.0 103 45.6
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 2.0e-11 73.6 66 51.5
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 2.0e-11 73.6 66 51.5
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 2.0e-11 73.6 84 50.0
Pp3c4_16120 Physcomitrium patens HOM05D007009 ORTHO05D008451 3.8e-10 69.3 165 28.5
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 3.6e-08 62.8 134 33.6
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 5.2e-07 58.9 77 45.5


User provided reference genes

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