Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001420 Simmondsia chinensis HOM05D003535 ORTHO05D003986 8.0e-67 256.9 126 100.0
Sc11g0001410 Simmondsia chinensis HOM05D003535 ORTHO05D003986 4.7e-43 177.9 126 73.0
Ciclev10032090m.g Citrus clementina HOM05D003535 ORTHO05D003986 3.2e-15 85.5 125 40.8
EL10Ac6g13752 Beta vulgaris HOM05D003535 ORTHO05D003986 1.6e-14 83.2 116 44.8
Ca_18085_v3 Cicer arietinum L. HOM05D003535 ORTHO05D003986 2.1e-14 82.8 123 42.3
Duzib248G0495 Durio zibethinus HOM05D003535 ORTHO05D003986 2.1e-14 82.8 127 43.3
Rhsim12G0125300 Rhododendron simsii HOM05D003535 ORTHO05D003986 3.5e-14 82.0 127 40.2
AUR62039423 Chenopodium quinoa HOM05D003535 ORTHO05D003986 6.0e-14 81.3 120 42.5
AUR62026558 Chenopodium quinoa HOM05D003535 ORTHO05D003986 2.3e-13 79.3 120 41.7
Duzib251G0917 Durio zibethinus HOM05D003535 ORTHO05D003986 3.9e-13 78.6 122 41.8
vmacro16290 Vaccinium macrocarpon HOM05D003535 ORTHO05D003986 5.1e-13 78.2 123 39.0
Prupe.1G260800 Prunus persica HOM05D003535 ORTHO05D003986 6.6e-13 77.8 123 41.5
Hund25313 Selenicereus undatus HOM05D003535 ORTHO05D003986 1.1e-12 77.0 116 40.5
Gohir.A12G142200 Gossypium hirsutum HOM05D003535 ORTHO05D003986 1.5e-12 76.6 121 42.1
Psat2g113240 Pisum sativum HOM05D003535 ORTHO05D003986 1.5e-12 76.6 125 39.2
Gohir.D12G147100 Gossypium hirsutum HOM05D003535 ORTHO05D003986 1.9e-12 76.3 122 41.8
Gorai.008G158300 Gossypium raimondii HOM05D003535 ORTHO05D003986 1.9e-12 76.3 122 41.8
Cfa009095 Carpinus fangiana HOM05D003535 ORTHO05D003986 2.5e-12 75.9 119 38.7
Duzib251G0037 Durio zibethinus HOM05D003535 ORTHO05D003986 4.3e-12 75.1 120 41.7
MD16G1085300 Malus domestica HOM05D003535 ORTHO05D003986 4.3e-12 75.1 123 40.7
Haze_12127 Corylus avellana HOM05D003535 ORTHO05D003986 9.6e-12 73.9 121 39.7
Atru.chr11.1948 Acer truncatum HOM05D003535 ORTHO05D003986 2.8e-11 72.4 125 36.8
Actinidia08185 Actinidia chinensis HOM05D003535 ORTHO05D003986 4.8e-11 71.6 119 37.8
Gohir.A04G098600 Gossypium hirsutum HOM05D003535 ORTHO05D003986 4.8e-11 71.6 123 42.3
FvH4_4g35140 Fragaria vesca HOM05D003535 ORTHO05D003986 6.2e-11 71.2 122 39.3
Gohir.D04G138200 Gossypium hirsutum HOM05D003535 ORTHO05D003986 6.2e-11 71.2 123 43.1
Thecc.02G240800 Theobroma cacao HOM05D003535 ORTHO05D003986 6.2e-11 71.2 95 43.2
QL03p067125 Quercus lobata HOM05D003535 ORTHO05D003986 8.1e-11 70.9 94 41.5
FAN17G0780 Fragaria x ananassa HOM05D003535 ORTHO05D003986 1.1e-10 70.5 121 38.8
Gorai.012G123100 Gossypium raimondii HOM05D003535 ORTHO05D003986 1.1e-10 70.5 123 43.1
arahy.Tifrunner.gnm1.ann1.FE2K59 Arachis hypogaea HOM05D003535 ORTHO05D003986 1.4e-10 70.1 128 38.3
arahy.Tifrunner.gnm1.ann1.Y99B41 Arachis hypogaea HOM05D003535 ORTHO05D003986 1.4e-10 70.1 128 38.3
Dinv31119 Davidia involucrata HOM05D003535 ORTHO05D003986 1.8e-10 69.7 123 38.2
TPR.G13941 Trifolium pratense HOM05D003535 ORTHO05D003986 1.8e-10 69.7 123 36.6
Peaxi162Scf01141g00123 Petunia axillaris HOM05D003535 ORTHO05D003986 2.4e-10 69.3 114 39.5
Sopen05g002290 Solanum pennellii HOM05D003535 ORTHO05D003986 2.4e-10 69.3 122 38.5
TWI18G1263 Tripterygium wilfordii HOM05D003535 ORTHO05D003986 2.4e-10 69.3 107 43.0
Medtr5g035810 Medicago truncatula HOM05D003535 ORTHO05D003986 3.1e-10 68.9 123 35.0
Phvul.002G076000 Phaseolus vulgaris HOM05D003535 ORTHO05D003986 3.1e-10 68.9 126 36.5
FAN12G2559 Fragaria x ananassa HOM05D003535 ORTHO05D003986 4.0e-10 68.6 121 38.0
CiPaw.06G075600 Carya illinoinensis HOM05D003535 ORTHO05D003986 5.3e-10 68.2 120 36.7
PGSC0003DMG400015612 Solanum tuberosum HOM05D003535 ORTHO05D003986 5.3e-10 68.2 122 38.5
CSS0008340 Camellia sinensis var. sinensis HOM05D003535 ORTHO05D003986 6.9e-10 67.8 102 38.2
CSS0014348 Camellia sinensis var. sinensis HOM05D003535 ORTHO05D003986 6.9e-10 67.8 102 38.2
CiPaw.05G145800 Carya illinoinensis HOM05D003535 ORTHO05D003986 9.0e-10 67.4 98 39.8
Lj2g0022595 Lotus japonicus HOM05D003535 ORTHO05D003986 9.0e-10 67.4 125 34.4
FAN22G0047 Fragaria x ananassa HOM05D003535 ORTHO05D003986 1.2e-09 67.0 121 38.0
VMungo1215G1093 Vigna mungo HOM05D003535 ORTHO05D003986 1.2e-09 67.0 125 36.0
Dinv24911 Davidia involucrata HOM05D003535 ORTHO05D003986 1.5e-09 66.6 108 39.8
Solyc05g006320.4 Solanum lycopersicum HOM05D003535 ORTHO05D003986 1.5e-09 66.6 122 37.7
Glyma.01G036700 Glycine max HOM05D003535 ORTHO05D003986 2.0e-09 66.2 125 35.2
Glyma.02G029300 Glycine max HOM05D003535 ORTHO05D003986 2.6e-09 65.9 125 36.0
Hma1.2p1_1049F.1_g251850 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 4.5e-09 65.1 118 40.7
TAR629G0129 Trochodendron aralioides HOM05D003535 ORTHO05D003986 4.5e-09 65.1 122 36.9
FAN07G1389 Fragaria x ananassa HOM05D003535 ORTHO05D003986 5.8e-09 64.7 105 37.1
Actinidia27767 Actinidia chinensis HOM05D003535 ORTHO05D003986 7.6e-09 64.3 119 37.8
Cc11_g14150 Coffea canephora HOM05D003535 ORTHO05D003986 1.3e-08 63.5 123 34.1
Actinidia15000 Actinidia chinensis HOM05D003535 ORTHO05D003986 1.7e-08 63.2 118 33.1
Hund05943 Selenicereus undatus HOM05D003535 ORTHO05D003986 1.7e-08 63.2 121 37.2
CAN.G159.17 Capsicum annuum HOM05D003535 ORTHO05D003986 3.8e-08 62.0 124 36.3
Nitab4.5_0010523g0040 Nicotiana tabacum HOM05D003535 ORTHO05D003986 3.8e-08 62.0 122 35.2
Lalb_Chr16g0382501 Lupinus albus HOM05D003535 ORTHO05D003986 4.9e-08 61.6 127 33.9
COL.COLO4_37887 Corchorus olitorius HOM05D003535 ORTHO05D003986 6.4e-08 61.2 82 43.9
Manes.05G092900 Manihot esculenta HOM05D003535 ORTHO05D003986 6.4e-08 61.2 122 36.9
Rhsim12G0050600 Rhododendron simsii HOM05D003535 ORTHO05D003986 6.4e-08 61.2 121 34.7
ECA233G0946 Erigeron canadensis HOM05D003535 ORTHO05D003986 1.1e-07 60.5 93 37.6
Manes.01G195800 Manihot esculenta HOM05D003535 ORTHO05D003986 1.4e-07 60.1 119 36.1
Nitab4.5_0000257g0080 Nicotiana tabacum HOM05D003535 ORTHO05D003986 1.4e-07 60.1 121 34.7
Potri.008G193300 Populus trichocarpa HOM05D003535 ORTHO05D003986 2.4e-07 59.3 127 36.2
Potri.010G036500 Populus trichocarpa HOM05D003535 ORTHO05D003986 2.4e-07 59.3 80 41.2
MD13G1085900 Malus domestica HOM05D003535 ORTHO05D003986 4.2e-07 58.5 106 34.9
Hma1.2p1_0160F.1_g070560 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 5.5e-07 58.2 106 35.8
RcHm_v2.0_Chr4g0444731 Rosa chinensis HOM05D003535 ORTHO05D003986 7.1e-07 57.8 104 37.5
TAR622G1103 Trochodendron aralioides HOM05D003535 ORTHO05D003986 3.5e-06 55.5 118 33.9
Actinidia04050 Actinidia chinensis HOM05D003535 ORTHO05D003986 4.6e-06 55.1 75 40.0
CsaV3_5G025420 Cucumis sativus L. HOM05D003535 ORTHO05D003986 4.6e-06 55.1 117 31.6
Nn4g22912 Nelumbo nucifera HOM05D003535 ORTHO05D003986 6.0e-06 54.7 106 32.1


User provided reference genes

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