Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001410 Simmondsia chinensis HOM05D003535 ORTHO05D003986 2.6e-147 525.4 275 100.0
Hund25313 Selenicereus undatus HOM05D003535 ORTHO05D003986 1.5e-54 217.2 286 47.6
EL10Ac6g13752 Beta vulgaris HOM05D003535 ORTHO05D003986 5.8e-54 215.3 286 49.0
Thecc.02G240800 Theobroma cacao HOM05D003535 ORTHO05D003986 2.3e-50 203.4 259 48.3
AUR62039423 Chenopodium quinoa HOM05D003535 ORTHO05D003986 1.9e-49 200.3 283 47.7
CiPaw.05G145800 Carya illinoinensis HOM05D003535 ORTHO05D003986 4.8e-48 195.7 255 47.5
Duzib251G0917 Durio zibethinus HOM05D003535 ORTHO05D003986 1.4e-47 194.1 268 46.3
Cfa009095 Carpinus fangiana HOM05D003535 ORTHO05D003986 1.8e-47 193.7 274 44.9
AUR62026558 Chenopodium quinoa HOM05D003535 ORTHO05D003986 3.1e-47 193.0 287 46.3
Prupe.1G260800 Prunus persica HOM05D003535 ORTHO05D003986 5.3e-47 192.2 280 46.8
Ciclev10032090m.g Citrus clementina HOM05D003535 ORTHO05D003986 9.0e-47 191.4 278 45.0
Atru.chr11.1948 Acer truncatum HOM05D003535 ORTHO05D003986 1.2e-46 191.0 278 44.2
Psat2g113240 Pisum sativum HOM05D003535 ORTHO05D003986 1.2e-46 191.0 282 44.3
Duzib251G0037 Durio zibethinus HOM05D003535 ORTHO05D003986 2.6e-46 189.9 268 45.9
Ca_18085_v3 Cicer arietinum L. HOM05D003535 ORTHO05D003986 3.8e-45 186.0 281 46.3
Gohir.D12G147100 Gossypium hirsutum HOM05D003535 ORTHO05D003986 1.1e-44 184.5 274 43.8
Lj2g0022595 Lotus japonicus HOM05D003535 ORTHO05D003986 1.9e-44 183.7 277 44.4
Gohir.A12G142200 Gossypium hirsutum HOM05D003535 ORTHO05D003986 2.5e-44 183.3 281 44.1
arahy.Tifrunner.gnm1.ann1.Y99B41 Arachis hypogaea HOM05D003535 ORTHO05D003986 3.2e-44 183.0 268 45.1
Gorai.008G158300 Gossypium raimondii HOM05D003535 ORTHO05D003986 3.2e-44 183.0 275 44.0
arahy.Tifrunner.gnm1.ann1.FE2K59 Arachis hypogaea HOM05D003535 ORTHO05D003986 5.5e-44 182.2 268 45.1
MD16G1085300 Malus domestica HOM05D003535 ORTHO05D003986 2.1e-43 180.3 278 45.3
Haze_12127 Corylus avellana HOM05D003535 ORTHO05D003986 7.9e-43 178.3 297 42.1
Dinv31119 Davidia involucrata HOM05D003535 ORTHO05D003986 1.0e-42 177.9 286 45.1
Lalb_Chr16g0382501 Lupinus albus HOM05D003535 ORTHO05D003986 1.3e-42 177.6 282 43.6
QL03p067125 Quercus lobata HOM05D003535 ORTHO05D003986 1.3e-42 177.6 253 44.7
Duzib248G0495 Durio zibethinus HOM05D003535 ORTHO05D003986 1.8e-42 177.2 300 41.3
CSS0008340 Camellia sinensis var. sinensis HOM05D003535 ORTHO05D003986 6.7e-42 175.3 260 46.5
TPR.G13941 Trifolium pratense HOM05D003535 ORTHO05D003986 8.7e-42 174.9 282 42.9
vmacro16290 Vaccinium macrocarpon HOM05D003535 ORTHO05D003986 1.5e-41 174.1 276 43.5
CSS0014348 Camellia sinensis var. sinensis HOM05D003535 ORTHO05D003986 1.9e-41 173.7 260 46.2
Sc11g0001420 Simmondsia chinensis HOM05D003535 ORTHO05D003986 2.5e-41 173.3 126 73.0
Manes.05G092900 Manihot esculenta HOM05D003535 ORTHO05D003986 3.3e-41 172.9 268 42.9
GSVIVG01020154001 Vitis vinifera HOM05D003535 ORTHO05D003986 1.3e-40 171.0 275 39.6
VMungo1215G1093 Vigna mungo HOM05D003535 ORTHO05D003986 4.8e-40 169.1 277 44.0
Phvul.002G076000 Phaseolus vulgaris HOM05D003535 ORTHO05D003986 1.1e-39 167.9 278 43.2
Eucgr.B02565 Eucalyptus grandis HOM05D003535 ORTHO05D003986 1.8e-39 167.2 275 42.9
TAR629G0129 Trochodendron aralioides HOM05D003535 ORTHO05D003986 3.1e-39 166.4 278 42.1
FvH4_4g35140 Fragaria vesca HOM05D003535 ORTHO05D003986 9.0e-39 164.9 285 42.1
Medtr5g035810 Medicago truncatula HOM05D003535 ORTHO05D003986 2.0e-38 163.7 281 39.9
Potri.008G193300 Populus trichocarpa HOM05D003535 ORTHO05D003986 2.6e-38 163.3 285 42.5
Actinidia15000 Actinidia chinensis HOM05D003535 ORTHO05D003986 3.4e-38 162.9 281 39.1
Manes.01G195800 Manihot esculenta HOM05D003535 ORTHO05D003986 3.4e-38 162.9 278 40.3
Gohir.D04G138200 Gossypium hirsutum HOM05D003535 ORTHO05D003986 1.7e-37 160.6 288 42.0
Gorai.012G123100 Gossypium raimondii HOM05D003535 ORTHO05D003986 1.7e-37 160.6 288 42.0
Rhsim12G0125300 Rhododendron simsii HOM05D003535 ORTHO05D003986 2.2e-37 160.2 300 40.3
Gohir.A04G098600 Gossypium hirsutum HOM05D003535 ORTHO05D003986 5.0e-37 159.1 278 42.8
FAN12G2559 Fragaria x ananassa HOM05D003535 ORTHO05D003986 6.5e-37 158.7 287 42.2
FAN07G1389 Fragaria x ananassa HOM05D003535 ORTHO05D003986 1.4e-36 157.5 286 42.7
Hma1.2p1_0160F.1_g070560 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 3.2e-36 156.4 273 42.1
Actinidia27767 Actinidia chinensis HOM05D003535 ORTHO05D003986 1.2e-35 154.5 269 41.6
Potri.010G036500 Populus trichocarpa HOM05D003535 ORTHO05D003986 1.2e-35 154.5 238 46.2
Dinv24911 Davidia involucrata HOM05D003535 ORTHO05D003986 4.6e-35 152.5 285 40.0
TWI18G1263 Tripterygium wilfordii HOM05D003535 ORTHO05D003986 6.1e-35 152.1 311 39.2
ClCG09G022140 Citrullus lanatus HOM05D003535 ORTHO05D003986 1.0e-34 151.4 275 40.0
Glyma.02G029300 Glycine max HOM05D003535 ORTHO05D003986 1.3e-34 151.0 277 40.8
TWI36G0475 Tripterygium wilfordii HOM05D003535 ORTHO05D003986 3.0e-34 149.8 303 38.9
Hma1.2p1_1049F.1_g251850 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 6.7e-34 148.7 331 37.2
Glyma.01G036700 Glycine max HOM05D003535 ORTHO05D003986 1.1e-33 147.9 277 40.4
FAN17G0780 Fragaria x ananassa HOM05D003535 ORTHO05D003986 1.5e-33 147.5 323 38.7
CsaV3_5G025420 Cucumis sativus L. HOM05D003535 ORTHO05D003986 4.3e-33 146.0 276 38.8
RcHm_v2.0_Chr4g0444731 Rosa chinensis HOM05D003535 ORTHO05D003986 5.7e-33 145.6 296 39.5
MD13G1085900 Malus domestica HOM05D003535 ORTHO05D003986 1.6e-32 144.1 268 39.9
Nn4g22912 Nelumbo nucifera HOM05D003535 ORTHO05D003986 4.8e-32 142.5 257 38.1
Rhsim12G0050600 Rhododendron simsii HOM05D003535 ORTHO05D003986 8.2e-32 141.7 288 38.2
Actinidia04050 Actinidia chinensis HOM05D003535 ORTHO05D003986 1.4e-31 141.0 229 40.6
Sabra10G0028600 Salix brachista HOM05D003535 ORTHO05D003986 1.8e-31 140.6 241 41.9
PGR119G2209 Punica granatum HOM05D003535 ORTHO05D003986 3.1e-31 139.8 275 38.5
MELO3C002939.2 Cucumis melo HOM05D003535 ORTHO05D003986 4.1e-31 139.4 277 38.6
Sed0012956 Sechium edule HOM05D003535 ORTHO05D003986 5.3e-31 139.0 276 38.0
FAN22G0047 Fragaria x ananassa HOM05D003535 ORTHO05D003986 6.9e-31 138.7 296 38.9
vmacro01199 Vaccinium macrocarpon HOM05D003535 ORTHO05D003986 6.9e-31 138.7 280 38.6
arahy.Tifrunner.gnm1.ann1.KT3LL4 Arachis hypogaea HOM05D003535 ORTHO05D003986 9.0e-31 138.3 285 39.6
Nn3g17007 Nelumbo nucifera HOM05D003535 ORTHO05D003986 9.0e-31 138.3 277 38.3
Hund05943 Selenicereus undatus HOM05D003535 ORTHO05D003986 1.5e-30 137.5 292 38.0
Sopen05g002290 Solanum pennellii HOM05D003535 ORTHO05D003986 2.0e-30 137.1 361 32.7
PGSC0003DMG400015612 Solanum tuberosum HOM05D003535 ORTHO05D003986 2.0e-30 137.1 366 33.1
THA.LOC104824671 Tarenaya hassleriana HOM05D003535 ORTHO05D003986 2.6e-30 136.7 307 36.5
Solyc05g006320.4 Solanum lycopersicum HOM05D003535 ORTHO05D003986 1.7e-29 134.0 361 32.1
Actinidia08185 Actinidia chinensis HOM05D003535 ORTHO05D003986 2.5e-28 130.2 275 34.9
Oeu018841.2 Olea europaea HOM05D003535 ORTHO05D003986 3.9e-26 122.9 278 37.1
Sabra08G0146800 Salix brachista HOM05D003535 ORTHO05D003986 5.1e-26 122.5 314 34.1
arahy.Tifrunner.gnm1.ann1.95J0BI Arachis hypogaea HOM05D003535 ORTHO05D003986 8.8e-26 121.7 307 36.2
Cc11_g14150 Coffea canephora HOM05D003535 ORTHO05D003986 1.5e-25 120.9 338 32.5
MBI14_g12776_MAGBIO Magnolia biondii HOM05D003535 ORTHO05D003986 2.5e-25 120.2 192 43.8
THA.LOC104822953 Tarenaya hassleriana HOM05D003535 ORTHO05D003986 3.3e-25 119.8 205 42.9
MSTRG.630 Avicennia marina HOM05D003535 ORTHO05D003986 9.7e-25 118.2 331 34.1
GSVIVG01007821001 Vitis vinifera HOM05D003535 ORTHO05D003986 4.1e-23 112.8 236 37.7
SalBow2G1585 Salvia bowleyana HOM05D003535 ORTHO05D003986 6.9e-23 112.1 340 31.8
AL2G29460 Arabidopsis lyrata HOM05D003535 ORTHO05D003986 1.5e-22 110.9 204 42.2
PSO161G0011 Papaver somniferum HOM05D003535 ORTHO05D003986 1.5e-22 110.9 271 35.8
Migut.L01454 Erythranthe guttata HOM05D003535 ORTHO05D003986 7.7e-22 108.6 345 33.0
Dinv33673 Davidia involucrata HOM05D003535 ORTHO05D003986 1.3e-21 107.8 249 35.7
BcaB03g15532 Brassica carinata HOM05D003535 ORTHO05D003986 3.8e-21 106.3 204 42.6
Thhalv10018424m.g Eutrema salsugineum HOM05D003535 ORTHO05D003986 5.0e-21 105.9 212 42.5
Lsat_1_v5_gn_8_162680 Lactuca sativa HOM05D003535 ORTHO05D003986 5.0e-21 105.9 325 31.1
CiPaw.06G075600 Carya illinoinensis HOM05D003535 ORTHO05D003986 1.1e-20 104.8 184 38.0
TAR622G1103 Trochodendron aralioides HOM05D003535 ORTHO05D003986 1.1e-20 104.8 203 36.5
AT1G70180 Arabidopsis thaliana HOM05D003535 ORTHO05D003986 2.5e-20 103.6 204 41.2
C06p36250 Brassica napus HOM05D003535 ORTHO05D003986 3.2e-20 103.2 212 41.5
BcaC08g45838 Brassica carinata HOM05D003535 ORTHO05D003986 4.2e-20 102.8 212 41.5
BolC6t38746H Brassica oleracea HOM05D003535 ORTHO05D003986 4.2e-20 102.8 212 41.5
Carub.0002s1687 Capsella rubella HOM05D003535 ORTHO05D003986 4.2e-20 102.8 204 41.7
CAN.G159.17 Capsicum annuum HOM05D003535 ORTHO05D003986 5.5e-20 102.4 345 31.6
A07p31200 Brassica napus HOM05D003535 ORTHO05D003986 9.4e-20 101.7 204 41.7
PSO478G4390 Papaver somniferum HOM05D003535 ORTHO05D003986 1.2e-19 101.3 277 34.7
BraA07t30753Z Brassica rapa HOM05D003535 ORTHO05D003986 2.1e-19 100.5 204 42.2
SGA_v2.0_scaffold166G38327 Striga asiatica HOM05D003535 ORTHO05D003986 7.9e-19 98.6 327 29.1
GSVIVG01032539001 Vitis vinifera HOM05D003535 ORTHO05D003986 1.4e-18 97.8 204 39.2
Aqoxy3G00881 Aquilegia oxysepala HOM05D003535 ORTHO05D003986 3.9e-18 96.3 316 31.3
CARHR063250 Cardamine hirsuta HOM05D003535 ORTHO05D003986 5.1e-18 95.9 204 39.7
Sp5g25300 Schrenkiella parvula HOM05D003535 ORTHO05D003986 2.6e-17 93.6 204 40.2
A02p16370 Brassica napus HOM05D003535 ORTHO05D003986 3.3e-17 93.2 203 39.9
BraA02t06696Z Brassica rapa HOM05D003535 ORTHO05D003986 3.3e-17 93.2 203 39.9
Cpa.g.sc5.338 Carica papaya HOM05D003535 ORTHO05D003986 4.4e-17 92.8 153 40.5
DCAR_007109 Daucus carota HOM05D003535 ORTHO05D003986 9.7e-17 91.7 423 27.2
C02p27320 Brassica napus HOM05D003535 ORTHO05D003986 1.3e-16 91.3 204 39.7
BolC2t08793H Brassica oleracea HOM05D003535 ORTHO05D003986 1.7e-16 90.9 204 39.2
Aa31LG4G10720 Aethionema arabicum HOM05D003535 ORTHO05D003986 1.1e-15 88.2 236 38.1
Peaxi162Scf01141g00123 Petunia axillaris HOM05D003535 ORTHO05D003986 1.4e-15 87.8 123 46.3
BcaB05g24535 Brassica carinata HOM05D003535 ORTHO05D003986 3.1e-15 86.7 204 39.7
BcaC03g15159 Brassica carinata HOM05D003535 ORTHO05D003986 3.1e-15 86.7 199 39.7
Os04g0465000 Oryza sativa ssp. japonica HOM05D003535 ORTHO05D003986 5.3e-15 85.9 292 31.2
HanXRQChr17g0546981 Helianthus annuus HOM05D003535 ORTHO05D003986 7.0e-15 85.5 157 42.0
Sed0009689 Sechium edule HOM05D003535 ORTHO05D003986 1.2e-14 84.7 274 33.2
Nitab4.5_0010523g0040 Nicotiana tabacum HOM05D003535 ORTHO05D003986 2.0e-14 84.0 126 44.4
Lju41A30T60 Lonicera japonica HOM05D003535 ORTHO05D003986 2.2e-13 80.5 274 31.0
Nitab4.5_0000257g0080 Nicotiana tabacum HOM05D003535 ORTHO05D003986 2.2e-13 80.5 126 42.9
Zm00001eb424450 Zea mays HOM05D003535 ORTHO05D003986 2.2e-13 80.5 147 42.9
ECA233G0946 Erigeron canadensis HOM05D003535 ORTHO05D003986 2.9e-13 80.1 127 41.7
MSTRG.7864 Avicennia marina HOM05D003535 ORTHO05D003986 1.1e-12 78.2 331 30.5
Prupe.3G278600 Prunus persica HOM05D003535 ORTHO05D003986 1.6e-11 74.3 273 31.5
CsaV3_5G037470 Cucumis sativus L. HOM05D003535 ORTHO05D003986 2.7e-11 73.6 254 30.7
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 6.1e-11 72.4 249 30.9
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 6.1e-11 72.4 249 30.9
COL.COLO4_37887 Corchorus olitorius HOM05D003535 ORTHO05D003986 8.0e-11 72.0 82 50.0
PGR044G1333 Punica granatum HOM05D003535 ORTHO05D003986 8.0e-11 72.0 298 30.2
MELO3C021511.2 Cucumis melo HOM05D003535 ORTHO05D003986 2.3e-10 70.5 265 29.8
ATR1101G092 Amborella trichopoda HOM05D003535 ORTHO05D003986 6.7e-10 68.9 255 31.4
Eucgr.K02879 Eucalyptus grandis HOM05D003535 ORTHO05D003986 8.8e-10 68.6 265 28.3
HanXRQChr12g0371191 Helianthus annuus HOM05D003535 ORTHO05D003986 1.5e-09 67.8 352 30.4
Haze_14626 Corylus avellana HOM05D003535 ORTHO05D003986 3.3e-09 66.6 263 30.0
SalBow2G2528 Salvia bowleyana HOM05D001943 ORTHO05D001969 3.3e-09 66.6 82 47.6
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.8e-08 63.5 271 30.3
Cfa007471 Carpinus fangiana HOM05D003535 ORTHO05D003986 4.8e-08 62.8 262 30.2
SEGI_38155 Sequoiadendron giganteum HOM05D003535 ORTHO05D003986 8.2e-08 62.0 166 33.1
MD17G1040400 Malus domestica HOM05D003535 ORTHO05D003986 1.4e-07 61.2 214 33.6
CSS0038696 Camellia sinensis var. sinensis HOM05D003535 ORTHO05D003986 2.4e-07 60.5 226 27.9
RcHm_v2.0_Chr2g0170341 Rosa chinensis HOM05D003535 ORTHO05D003986 7.0e-07 58.9 279 27.6
Hma1.2p1_1975F.1_g309720 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 2.0e-06 57.4 273 27.1


User provided reference genes

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