Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 1.1e-104 384.8 201 100.0
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 2.0e-55 221.1 199 65.8
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 2.7e-55 220.7 199 66.3
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 2.8e-52 210.7 201 59.2
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 8.0e-52 209.1 201 64.7
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 9.2e-48 195.7 223 55.6
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.3e-46 191.8 211 54.5
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.3e-46 191.8 211 54.5
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 1.1e-45 188.7 220 53.2
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 1.5e-45 188.3 230 54.8
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 1.5e-45 188.3 221 52.5
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 3.3e-45 187.2 219 53.0
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 4.3e-45 186.8 208 54.3
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 7.3e-45 186.0 217 54.4
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 7.3e-45 186.0 216 53.2
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 3.6e-44 183.7 211 50.7
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 1.1e-43 182.2 217 53.9
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 2.3e-43 181.0 221 50.2
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 4.0e-43 180.3 207 52.7
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.6e-42 177.6 214 51.4
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 7.5e-42 176.0 213 54.0
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 9.9e-42 175.6 166 56.6
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.7e-41 174.9 219 50.7
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 3.7e-41 173.7 214 51.4
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 3.7e-41 173.7 214 51.4
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 8.3e-41 172.6 147 63.3
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 1.1e-40 172.2 213 49.8
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 1.9e-40 171.4 206 53.4
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 1.9e-40 171.4 209 50.2
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 1.9e-40 171.4 216 50.0
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 5.4e-40 169.9 220 48.6
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 5.4e-40 169.9 214 49.1
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 7.1e-40 169.5 209 48.8
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 9.2e-40 169.1 221 49.3
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 1.6e-39 168.3 205 50.2
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.6e-39 168.3 211 48.8
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 2.7e-39 167.5 221 48.0
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 4.6e-39 166.8 210 49.5
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 1.3e-38 165.2 214 49.5
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 1.7e-38 164.9 212 47.6
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.3e-38 164.5 225 48.4
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 3.0e-38 164.1 179 53.6
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 3.0e-38 164.1 212 48.1
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 3.9e-38 163.7 209 48.3
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 3.9e-38 163.7 218 47.7
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 5.1e-38 163.3 164 59.1
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 8.6e-38 162.5 213 47.9
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 8.6e-38 162.5 171 55.6
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 1.1e-37 162.2 206 48.1
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 1.5e-37 161.8 219 48.4
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 1.5e-37 161.8 213 46.9
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.9e-37 161.4 204 49.0
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 1.9e-37 161.4 204 49.0
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 2.5e-37 161.0 209 48.3
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 5.6e-37 159.8 171 55.0
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 9.5e-37 159.1 220 46.8
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 2.1e-36 157.9 218 49.5
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.1e-36 157.9 220 47.7
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 6.2e-36 156.4 213 46.9
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 6.2e-36 156.4 147 59.9
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 6.2e-36 156.4 171 56.1
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 6.2e-36 156.4 160 55.0
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 8.1e-36 156.0 211 45.5
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 1.1e-35 155.6 211 46.0
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 1.1e-35 155.6 153 57.5
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 1.1e-35 155.6 216 45.8
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 1.4e-35 155.2 220 47.7
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 1.4e-35 155.2 210 48.6
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 1.4e-35 155.2 213 46.9
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 1.4e-35 155.2 175 50.9
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 1.8e-35 154.8 163 56.4
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 2.4e-35 154.5 223 44.8
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 3.1e-35 154.1 210 47.1
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 3.1e-35 154.1 210 47.1
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 4.0e-35 153.7 245 43.7
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 5.2e-35 153.3 223 44.4
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 6.8e-35 152.9 206 47.1
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 6.8e-35 152.9 216 49.1
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 8.9e-35 152.5 213 48.4
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 8.9e-35 152.5 166 57.2
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 1.5e-34 151.8 210 47.6
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 2.6e-34 151.0 207 47.3
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 3.4e-34 150.6 217 46.1
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 3.4e-34 150.6 217 46.1
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 4.4e-34 150.2 210 46.7
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 9.9e-34 149.1 175 48.6
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 1.3e-33 148.7 209 46.4
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 1.3e-33 148.7 179 51.4
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 1.7e-33 148.3 208 46.6
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 1.7e-33 148.3 208 46.6
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 1.7e-33 148.3 206 44.7
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 8.4e-33 146.0 208 46.6
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 8.4e-33 146.0 208 46.6
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 1.1e-32 145.6 208 46.2
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.4e-32 145.2 187 49.2
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.4e-32 145.2 187 49.2
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 1.9e-32 144.8 181 51.4
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 3.2e-32 144.1 221 45.7
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 7.8e-31 139.4 179 49.2
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 1.6e-28 131.7 188 44.7
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 6.9e-27 126.3 101 63.4
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 9.0e-27 125.9 267 37.8
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 2.4e-24 117.9 218 43.1
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 1.7e-22 111.7 91 62.6
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 6.6e-22 109.8 152 44.1
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 8.7e-22 109.4 68 77.9
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 1.1e-21 109.0 101 59.4
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 1.3e-20 105.5 152 44.7
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 8.1e-20 102.8 155 43.2
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 1.1e-19 102.4 216 38.0
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 5.3e-19 100.1 196 39.8
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 3.4e-18 97.4 101 54.5
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 3.2e-16 90.9 87 59.8
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 2.8e-12 77.8 152 36.8
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 6.4e-09 66.6 176 32.4
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 2.4e-08 64.7 49 57.1
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 2.4e-08 64.7 49 57.1
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 3.2e-08 64.3 51 56.9
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 5.5e-08 63.5 157 35.0


User provided reference genes

Program Settings