Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001330 Simmondsia chinensis HOM05D006231 ORTHO05D007857 3.7e-174 614.8 309 100.0
EL10Ac6g13629 Beta vulgaris HOM05D006231 ORTHO05D007857 2.9e-94 349.4 325 59.1
AUR62005324 Chenopodium quinoa HOM05D006231 ORTHO05D007857 1.5e-90 337.0 327 59.0
Ah.03g132450 Amaranthus hybridus HOM05D006231 ORTHO05D007857 1.2e-87 327.4 244 67.6
AUR62013974 Chenopodium quinoa HOM05D006231 ORTHO05D007857 7.7e-87 324.7 328 56.7
Hund25325 Selenicereus undatus HOM05D006231 ORTHO05D007857 2.5e-85 319.7 326 56.1
ClCG05G025120 Citrullus lanatus HOM05D006231 ORTHO05D007857 6.3e-81 305.1 299 55.5
TWI36G0577 Tripterygium wilfordii HOM05D006231 ORTHO05D007857 8.2e-81 304.7 306 54.9
CSS0002380 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.4e-80 303.9 306 54.6
CsaV3_5G031780 Cucumis sativus L. HOM05D006231 ORTHO05D007857 5.3e-80 302.0 295 55.9
Dinv24894 Davidia involucrata HOM05D006231 ORTHO05D007857 6.9e-80 301.6 239 64.0
CSS0044234 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 9.1e-80 301.2 308 53.9
MELO3C012017.2 Cucumis melo HOM05D006231 ORTHO05D007857 1.2e-79 300.8 300 54.7
Ciclev10032202m.g Citrus clementina HOM05D006231 ORTHO05D007857 1.7e-78 297.0 309 54.7
Thecc.02G247800 Theobroma cacao HOM05D006231 ORTHO05D007857 1.1e-77 294.3 299 56.9
Manes.01G197500 Manihot esculenta HOM05D006231 ORTHO05D007857 1.9e-77 293.5 255 59.6
ECA233G1652 Erigeron canadensis HOM05D006231 ORTHO05D007857 2.5e-77 293.1 296 56.8
Hma1.2p1_1017F.1_g248270 Hydrangea macrophylla HOM05D006231 ORTHO05D007857 3.2e-77 292.7 237 65.0
CiPaw.05G148900 Carya illinoinensis HOM05D006231 ORTHO05D007857 5.5e-77 292.0 307 53.7
Eucgr.B02548 Eucalyptus grandis HOM05D006231 ORTHO05D007857 7.2e-77 291.6 242 61.6
Oeu046714.1 Olea europaea HOM05D006231 ORTHO05D007857 7.2e-77 291.6 302 53.6
Atru.chr11.1975 Acer truncatum HOM05D006231 ORTHO05D007857 9.4e-77 291.2 311 52.7
Cfa009127 Carpinus fangiana HOM05D006231 ORTHO05D007857 1.2e-76 290.8 312 52.9
PGR119G0912 Punica granatum HOM05D006231 ORTHO05D007857 1.2e-76 290.8 233 61.8
Nn4g22867 Nelumbo nucifera HOM05D006231 ORTHO05D007857 1.6e-76 290.4 321 51.7
Cc11_g14350 Coffea canephora HOM05D006231 ORTHO05D007857 2.1e-76 290.0 298 54.4
Nitab4.5_0004963g0030 Nicotiana tabacum HOM05D006231 ORTHO05D007857 2.1e-76 290.0 303 52.5
Lsat_1_v5_gn_8_158260 Lactuca sativa HOM05D006231 ORTHO05D007857 2.7e-76 289.7 317 53.6
Potri.008G146000 Populus trichocarpa HOM05D006231 ORTHO05D007857 2.7e-76 289.7 242 62.0
QL03p062170 Quercus lobata HOM05D006231 ORTHO05D007857 3.6e-76 289.3 315 53.0
TAR629G0133 Trochodendron aralioides HOM05D006231 ORTHO05D007857 4.7e-76 288.9 316 52.8
CANSAT01G1818 Cannabis sativa HOM05D006231 ORTHO05D007857 6.1e-76 288.5 317 53.9
MD16G1088300 Malus domestica HOM05D006231 ORTHO05D007857 6.1e-76 288.5 255 58.8
THA.LOC104822957 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 1.0e-75 287.7 282 56.0
COL.COLO4_19536 Corchorus olitorius HOM05D006231 ORTHO05D007857 1.4e-75 287.3 240 62.5
Gohir.D05G320900 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.4e-75 287.3 311 52.7
vmacro16274 Vaccinium macrocarpon HOM05D006231 ORTHO05D007857 1.8e-75 287.0 295 54.2
Sed0009573 Sechium edule HOM05D006231 ORTHO05D007857 2.3e-75 286.6 292 54.1
THA.LOC104822056 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 2.3e-75 286.6 242 60.7
Haze_12158 Corylus avellana HOM05D006231 ORTHO05D007857 3.9e-75 285.8 261 57.9
Gohir.D02G165000 Gossypium hirsutum HOM05D006231 ORTHO05D007857 3.9e-75 285.8 254 60.6
CAN.G505.18 Capsicum annuum HOM05D006231 ORTHO05D007857 5.1e-75 285.4 300 54.7
Duzib248G0169 Durio zibethinus HOM05D006231 ORTHO05D007857 5.1e-75 285.4 300 54.7
Gorai.009G344200 Gossypium raimondii HOM05D006231 ORTHO05D007857 5.1e-75 285.4 311 52.4
RcHm_v2.0_Chr4g0444351 Rosa chinensis HOM05D006231 ORTHO05D007857 6.7e-75 285.0 337 51.0
Gohir.A05G318600 Gossypium hirsutum HOM05D006231 ORTHO05D007857 8.8e-75 284.6 310 52.3
Nitab4.5_0001474g0130 Nicotiana tabacum HOM05D006231 ORTHO05D007857 8.8e-75 284.6 314 51.9
Aa31LG7G7830 Aethionema arabicum HOM05D006231 ORTHO05D007857 1.1e-74 284.3 238 61.8
Prupe.1G258300 Prunus persica HOM05D006231 ORTHO05D007857 1.1e-74 284.3 254 59.1
Aqoxy3G00933 Aquilegia oxysepala HOM05D006231 ORTHO05D007857 1.5e-74 283.9 265 56.6
HanXRQChr08g0208971 Helianthus annuus HOM05D006231 ORTHO05D007857 2.0e-74 283.5 292 56.2
AL1G37790 Arabidopsis lyrata HOM05D006231 ORTHO05D007857 3.3e-74 282.7 293 53.2
arahy.Tifrunner.gnm1.ann1.XK2UET Arachis hypogaea HOM05D006231 ORTHO05D007857 3.3e-74 282.7 314 51.6
MSTRG.613 Avicennia marina HOM05D006231 ORTHO05D007857 5.7e-74 282.0 308 53.2
BcaC05g26301 Brassica carinata HOM05D006231 ORTHO05D007857 9.7e-74 281.2 254 57.5
C05p23180 Brassica napus HOM05D006231 ORTHO05D007857 9.7e-74 281.2 246 58.5
BolC5t31019H Brassica oleracea HOM05D006231 ORTHO05D007857 9.7e-74 281.2 254 57.5
Actinidia15012 Actinidia chinensis HOM05D006231 ORTHO05D007857 2.2e-73 280.0 248 61.3
Carub.0001s2346 Capsella rubella HOM05D006231 ORTHO05D007857 2.8e-73 279.6 284 53.9
Thhalv10008192m.g Eutrema salsugineum HOM05D006231 ORTHO05D007857 2.8e-73 279.6 250 58.8
Potri.010G095800 Populus trichocarpa HOM05D006231 ORTHO05D007857 3.7e-73 279.3 246 60.2
arahy.Tifrunner.gnm1.ann1.FQS9XH Arachis hypogaea HOM05D006231 ORTHO05D007857 6.3e-73 278.5 314 51.0
PGSC0003DMG400004132 Solanum tuberosum HOM05D006231 ORTHO05D007857 6.3e-73 278.5 310 51.6
Ca_04621_v3 Cicer arietinum L. HOM05D006231 ORTHO05D007857 1.4e-72 277.3 232 61.6
Lalb_Chr09g0326451 Lupinus albus HOM05D006231 ORTHO05D007857 1.4e-72 277.3 234 61.1
Sopen05g001920 Solanum pennellii HOM05D006231 ORTHO05D007857 1.4e-72 277.3 290 53.1
FvH4_4g34910 Fragaria vesca HOM05D006231 ORTHO05D007857 1.8e-72 276.9 327 51.4
MD13G1088000 Malus domestica HOM05D006231 ORTHO05D007857 2.4e-72 276.6 252 58.3
CARHR024340 Cardamine hirsuta HOM05D006231 ORTHO05D007857 4.1e-72 275.8 250 58.4
CSS0037524 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 7.0e-72 275.0 238 57.6
AT1G24040 Arabidopsis thaliana HOM05D006231 ORTHO05D007857 9.1e-72 274.6 284 53.5
BcaB07g32378 Brassica carinata HOM05D006231 ORTHO05D007857 1.6e-71 273.9 252 57.5
Lj2g0015887 Lotus japonicus HOM05D006231 ORTHO05D007857 1.6e-71 273.9 224 62.1
Sp1g21370 Schrenkiella parvula HOM05D006231 ORTHO05D007857 3.5e-71 272.7 258 55.0
SalBow2G0481 Salvia bowleyana HOM05D006231 ORTHO05D007857 4.5e-71 272.3 256 56.6
Glyma.01G034200 Glycine max HOM05D006231 ORTHO05D007857 5.9e-71 271.9 254 57.1
Psat2g109920 Pisum sativum HOM05D006231 ORTHO05D007857 7.7e-71 271.6 299 50.5
Peaxi162Scf00421g00419 Petunia axillaris HOM05D006231 ORTHO05D007857 2.2e-70 270.0 293 51.2
Medtr5g035060 Medicago truncatula HOM05D006231 ORTHO05D007857 3.8e-70 269.2 296 52.7
PSO017G5161 Papaver somniferum HOM05D006231 ORTHO05D007857 3.8e-70 269.2 306 51.0
Glyma.02G032100 Glycine max HOM05D006231 ORTHO05D007857 1.1e-69 267.7 262 55.0
PSO478G5064 Papaver somniferum HOM05D006231 ORTHO05D007857 1.1e-69 267.7 310 50.6
Migut.L01438 Erythranthe guttata HOM05D006231 ORTHO05D007857 4.2e-69 265.8 250 56.4
FAN12G2615 Fragaria x ananassa HOM05D006231 ORTHO05D007857 9.4e-69 264.6 315 50.8
unitig_22.g6476 Utricularia gibba HOM05D006231 ORTHO05D007857 2.1e-68 263.5 217 60.8
TPR.G4354 Trifolium pratense HOM05D006231 ORTHO05D007857 3.0e-67 259.6 264 53.4
DCAR_024529 Daucus carota HOM05D006231 ORTHO05D007857 5.2e-67 258.8 196 64.3
FAN07G0090 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.5e-66 257.3 323 48.0
FAN22G0458 Fragaria x ananassa HOM05D006231 ORTHO05D007857 2.6e-66 256.5 330 47.6
VMungo1215G3085 Vigna mungo HOM05D006231 ORTHO05D007857 2.6e-66 256.5 272 52.2
FAN17G2958 Fragaria x ananassa HOM05D006231 ORTHO05D007857 7.5e-66 255.0 323 47.7
BraA09t39576Z Brassica rapa HOM05D006231 ORTHO05D007857 2.8e-65 253.1 300 48.7
A09p40810 Brassica napus HOM05D006231 ORTHO05D007857 3.7e-65 252.7 300 48.7
Phvul.002G073400 Phaseolus vulgaris HOM05D006231 ORTHO05D007857 8.2e-65 251.5 311 48.2
Sabra10G0068400 Salix brachista HOM05D006231 ORTHO05D007857 1.1e-64 251.1 302 47.7
Rhsim12G0123300 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.1e-64 249.6 274 49.3
CDE10G0954 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 7.0e-64 248.4 275 49.8
Lj3A1049T58 Lonicera japonica HOM05D006231 ORTHO05D007857 3.5e-63 246.1 271 51.7
Sabra08G0111000 Salix brachista HOM05D006231 ORTHO05D007857 2.2e-62 243.4 211 61.1
MBI15_g12952_MAGBIO Magnolia biondii HOM05D006231 ORTHO05D007857 1.4e-59 234.2 212 54.7
SGA_v2.0_scaffold166G38349 Striga asiatica HOM05D006231 ORTHO05D007857 8.8e-59 231.5 324 44.8
CDE10G0637 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 1.8e-56 223.8 175 61.1
SEGI_07841 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 1.8e-56 223.8 210 55.2
ATR1149G099 Amborella trichopoda HOM05D006231 ORTHO05D007857 2.0e-55 220.3 178 59.6
HPP92_010904 Vanilla planifolia HOM05D006231 ORTHO05D007857 2.2e-54 216.9 280 45.0
Gorai.005G184900 Gossypium raimondii HOM05D006231 ORTHO05D007857 8.5e-54 214.9 254 50.4
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 8.0e-52 208.4 221 52.9
GSVIVG01020181001 Vitis vinifera HOM05D006231 ORTHO05D007857 1.0e-51 208.0 148 66.2
Solyc05g005890.2 Solanum lycopersicum HOM05D006231 ORTHO05D007857 5.7e-50 202.2 141 70.2
Os04g0465500 Oryza sativa ssp. japonica HOM05D006231 ORTHO05D007857 9.8e-50 201.4 234 48.7
Zm00001eb424460 Zea mays HOM05D006231 ORTHO05D007857 7.0e-48 195.3 313 42.5
SEGI_36756 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 9.2e-48 194.9 216 50.5
Zm00001eb348680 Zea mays HOM05D006231 ORTHO05D007857 1.8e-40 170.6 238 42.9
Pp3c2_6130 Physcomitrium patens HOM05D006231 ORTHO05D007857 2.4e-40 170.2 216 44.9
Pp3c2_6132 Physcomitrium patens HOM05D006231 ORTHO05D007857 2.4e-40 170.2 216 44.9
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 5.0e-38 162.5 223 41.3
Gohir.A03G141850 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.9e-37 160.6 165 55.2
Psat2g109880 Pisum sativum HOM05D006231 ORTHO05D007857 8.9e-35 151.8 214 42.1
SMO365G0079 Selaginella moellendorffii HOM05D006231 ORTHO05D007857 3.7e-33 146.4 193 41.5
Medtr5g035050 Medicago truncatula HOM05D006231 ORTHO05D007857 2.3e-27 127.1 78 82.1
AagrBONN_evm.TU.Sc2ySwM_368.2752 Anthoceros agrestis HOM05D006231 ORTHO05D007857 1.9e-24 117.5 175 38.9
Dinv31098 Davidia involucrata HOM05D006231 ORTHO05D007857 6.0e-23 112.5 90 64.4
CBR_g40430 Chara braunii HOM05D017800 ORTHO05D019665 1.3e-22 111.3 301 29.6
TAR622G0489 Trochodendron aralioides HOM05D006231 ORTHO05D007857 1.0e-14 85.1 73 58.9
Cre10.g464750 Chlamydomonas reinhardtii HOM05D006231 ORTHO05D007857 1.1e-11 75.1 239 25.1
PRCOL_00005055 Prasinoderma coloniale HOM05D006231 ORTHO05D007857 5.4e-08 62.8 116 32.8


User provided reference genes

Program Settings