Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001310 Simmondsia chinensis HOM05D008443 ORTHO05D010587 2.2e-36 155.2 84 100.0
QL03p061920 Quercus lobata HOM05D008443 ORTHO05D010587 1.9e-11 72.4 68 55.9
Nn3g16936 Nelumbo nucifera HOM05D008443 ORTHO05D010587 4.1e-11 71.2 59 59.3
Manes.01G198240 Manihot esculenta HOM05D008443 ORTHO05D010587 5.4e-11 70.9 69 56.5
Manes.05G088700 Manihot esculenta HOM05D008443 ORTHO05D010587 1.2e-10 69.7 71 54.9
TWI36G1347 Tripterygium wilfordii HOM05D008443 ORTHO05D010587 1.0e-09 66.6 72 52.8
Aqoxy3G03049 Aquilegia oxysepala HOM05D008443 ORTHO05D010587 1.3e-09 66.2 70 51.4
Lsat_1_v5_gn_3_47940 Lactuca sativa HOM05D008443 ORTHO05D010587 1.3e-09 66.2 75 52.0
Prupe.1G256700 Prunus persica HOM05D008443 ORTHO05D010587 3.0e-09 65.1 51 68.6
CSS0001689 Camellia sinensis var. sinensis HOM05D008443 ORTHO05D010587 5.1e-09 64.3 62 56.5
TPR.G35976 Trifolium pratense HOM05D008443 ORTHO05D010587 6.6e-09 63.9 67 55.2
VMungo0251G0489 Vigna mungo HOM05D008443 ORTHO05D010587 6.6e-09 63.9 62 51.6
MBI15_g19742_MAGBIO Magnolia biondii HOM05D008443 ORTHO05D010587 8.7e-09 63.5 68 55.9
Glyma.08G289300 Glycine max HOM05D008443 ORTHO05D010587 1.1e-08 63.2 48 64.6
Duzib268G1406 Durio zibethinus HOM05D008443 ORTHO05D010587 1.5e-08 62.8 49 65.3
Gohir.A05G318400 Gossypium hirsutum HOM05D008443 ORTHO05D010587 1.5e-08 62.8 49 65.3
AUR62013990 Chenopodium quinoa HOM05D008443 ORTHO05D010587 1.9e-08 62.4 64 51.6
Phvul.003G053700 Phaseolus vulgaris HOM05D008443 ORTHO05D010587 1.9e-08 62.4 69 49.3
Gorai.009G343700 Gossypium raimondii HOM05D008443 ORTHO05D010587 2.5e-08 62.0 45 68.9
MD16G1089300 Malus domestica HOM05D008443 ORTHO05D010587 2.5e-08 62.0 61 55.7
TAR629G3213 Trochodendron aralioides HOM05D008443 ORTHO05D010587 2.5e-08 62.0 67 52.2
Medtr8g063410 Medicago truncatula HOM05D008443 ORTHO05D010587 4.3e-08 61.2 65 49.2
PGR102G0936 Punica granatum HOM05D008443 ORTHO05D010587 4.3e-08 61.2 64 57.8
CiPaw.05G147800 Carya illinoinensis HOM05D008443 ORTHO05D010587 7.3e-08 60.5 74 47.3
MELO3C012013.2 Cucumis melo HOM05D008443 ORTHO05D010587 7.3e-08 60.5 54 61.1
CsaV3_5G031740 Cucumis sativus L. HOM05D008443 ORTHO05D010587 7.3e-08 60.5 54 61.1
Haze_07480 Corylus avellana HOM05D008443 ORTHO05D010587 9.6e-08 60.1 63 47.6
MD13G1089100 Malus domestica HOM05D008443 ORTHO05D010587 9.6e-08 60.1 45 68.9
RcHm_v2.0_Chr4g0444191 Rosa chinensis HOM05D008443 ORTHO05D010587 9.6e-08 60.1 45 64.4
SEGI_04815 Sequoiadendron giganteum HOM05D008443 ORTHO05D010587 9.6e-08 60.1 62 48.4
Eucgr.B03356 Eucalyptus grandis HOM05D008443 ORTHO05D010587 1.6e-07 59.3 50 58.0
Gohir.D05G320600 Gossypium hirsutum HOM05D008443 ORTHO05D010587 2.1e-07 58.9 45 66.7
CANSAT01G1518 Cannabis sativa HOM05D008443 ORTHO05D010587 2.8e-07 58.5 70 48.6
Gohir.A03G141200 Gossypium hirsutum HOM05D008443 ORTHO05D010587 2.8e-07 58.5 49 57.1
Cfa019086 Carpinus fangiana HOM05D008443 ORTHO05D010587 3.6e-07 58.2 64 46.9
Gorai.005G184100 Gossypium raimondii HOM05D008443 ORTHO05D010587 3.6e-07 58.2 49 57.1
MSTRG.2385 Avicennia marina HOM05D008443 ORTHO05D010587 4.7e-07 57.8 65 49.2
ClCG05G025160 Citrullus lanatus HOM05D008443 ORTHO05D010587 4.7e-07 57.8 72 48.6
ATR1149G093 Amborella trichopoda HOM05D008443 ORTHO05D010587 8.1e-07 57.0 76 42.1
FAN17G0561 Fragaria x ananassa HOM05D008443 ORTHO05D010587 8.1e-07 57.0 45 62.2
FAN22G1825 Fragaria x ananassa HOM05D008443 ORTHO05D010587 1.1e-06 56.6 45 62.2
Glyma.18G135000 Glycine max HOM05D008443 ORTHO05D010587 2.4e-06 55.5 69 46.4
Gohir.D02G164100 Gossypium hirsutum HOM05D008443 ORTHO05D010587 2.4e-06 55.5 48 56.2
Rhsim12G0048000 Rhododendron simsii HOM05D008443 ORTHO05D010587 2.4e-06 55.5 61 49.2
ATR0064G025 Amborella trichopoda HOM05D007413 ORTHO05D009357 3.1e-06 55.1 72 43.1
CDE07G0196 Ceratophyllum demersum HOM05D008443 ORTHO05D010587 3.1e-06 55.1 48 56.2
THA.LOC109117024 Tarenaya hassleriana HOM05D009339 ORTHO05D011480 6.9e-06 53.9 46 56.5


User provided reference genes

Program Settings