Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001140 Simmondsia chinensis HOM05D007558 ORTHO05D009245 2.3e-80 302.4 172 100.0
EL10Ac6g13681 Beta vulgaris HOM05D023191 ORTHO05D009245 3.0e-16 89.4 103 53.4
Ciclev10032958m.g Citrus clementina HOM05D007558 ORTHO05D009245 1.5e-15 87.0 184 35.9
AUR62014050 Chenopodium quinoa HOM05D023191 ORTHO05D009245 4.4e-15 85.5 178 41.0
Ah.03g132750 Amaranthus hybridus HOM05D023191 ORTHO05D009245 7.4e-15 84.7 95 49.5
Dinv15286 Davidia involucrata HOM05D000812 ORTHO05D000672 1.3e-14 84.0 142 36.6
QL03p060106 Quercus lobata HOM05D007558 ORTHO05D009245 1.7e-14 83.6 138 40.6
Potri.010G041600 Populus trichocarpa HOM05D007558 ORTHO05D009245 2.8e-14 82.8 153 35.9
Actinidia08162 Actinidia chinensis HOM05D007558 ORTHO05D009245 3.7e-14 82.4 105 46.7
AUR62005388 Chenopodium quinoa HOM05D023191 ORTHO05D009245 1.4e-13 80.5 101 53.5
Cfa009155 Carpinus fangiana HOM05D007558 ORTHO05D009245 4.1e-13 79.0 153 39.9
Medtr5g034200 Medicago truncatula HOM05D007558 ORTHO05D009245 9.1e-13 77.8 107 47.7
Ah.02g129970 Amaranthus hybridus HOM05D023191 ORTHO05D009245 5.9e-12 75.1 231 34.6
Glyma.02G035400 Glycine max HOM05D007558 ORTHO05D009245 1.3e-11 73.9 49 69.4
Phvul.002G070800 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 1.7e-11 73.6 71 54.9
VMungo1215G0509 Vigna mungo HOM05D007558 ORTHO05D009245 1.7e-11 73.6 71 54.9
CSS0045389 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 2.2e-11 73.2 142 38.0
Thecc.02G251400 Theobroma cacao HOM05D007558 ORTHO05D009245 2.2e-11 73.2 160 37.5
Duzib268G0018 Durio zibethinus HOM05D007558 ORTHO05D009245 2.9e-11 72.8 156 39.1
Lalb_Chr05g0216831 Lupinus albus HOM05D007558 ORTHO05D009245 2.9e-11 72.8 117 47.0
PGR102G1011 Punica granatum HOM05D007558 ORTHO05D009245 5.0e-11 72.0 121 39.7
Eucgr.B03316 Eucalyptus grandis HOM05D007558 ORTHO05D009245 8.5e-11 71.2 64 57.8
Hma1.2p1_0536F.1_g173970 Hydrangea macrophylla HOM05D007558 ORTHO05D009245 8.5e-11 71.2 141 38.3
Lj2g0015975 Lotus japonicus HOM05D007558 ORTHO05D009245 8.5e-11 71.2 150 39.3
CiPaw.06G071200 Carya illinoinensis HOM05D007558 ORTHO05D009245 1.9e-10 70.1 148 33.8
Lj4g0018280 Lotus japonicus HOM05D007558 ORTHO05D009245 2.5e-10 69.7 103 42.7
TPR.G11726 Trifolium pratense HOM05D007558 ORTHO05D009245 2.5e-10 69.7 72 50.0
Nn4g22760 Nelumbo nucifera HOM05D007558 ORTHO05D009245 3.2e-10 69.3 62 56.5
Oeu056732.1 Olea europaea HOM05D007558 ORTHO05D009245 3.2e-10 69.3 143 37.8
Atru.chr11.2043 Acer truncatum HOM05D007558 ORTHO05D009245 4.2e-10 68.9 152 30.9
Manes.12G027900 Manihot esculenta HOM05D007558 ORTHO05D009245 4.2e-10 68.9 162 35.2
COL.COLO4_24179 Corchorus olitorius HOM05D007558 ORTHO05D009245 7.2e-10 68.2 177 35.0
TWI18G1040 Tripterygium wilfordii HOM05D007558 ORTHO05D009245 7.2e-10 68.2 162 38.9
Gohir.A04G135600 Gossypium hirsutum HOM05D007558 ORTHO05D009245 9.4e-10 67.8 73 52.1
Gohir.D04G178700 Gossypium hirsutum HOM05D007558 ORTHO05D009245 9.4e-10 67.8 73 52.1
Gorai.012G171800 Gossypium raimondii HOM05D007558 ORTHO05D009245 9.4e-10 67.8 73 52.1
TPR.G11688 Trifolium pratense HOM05D007558 ORTHO05D009245 9.4e-10 67.8 76 48.7
DCAR_007085 Daucus carota HOM05D007558 ORTHO05D009245 1.6e-09 67.0 161 34.8
FAN17G0543 Fragaria x ananassa HOM05D007558 ORTHO05D009245 1.6e-09 67.0 161 33.5
Duzib248G0521 Durio zibethinus HOM05D007558 ORTHO05D009245 3.6e-09 65.9 164 32.9
CSS0017958 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 4.7e-09 65.5 111 41.4
Glyma.08G286300 Glycine max HOM05D007558 ORTHO05D009245 6.1e-09 65.1 84 50.0
Lalb_Chr16g0382221 Lupinus albus HOM05D007558 ORTHO05D009245 6.1e-09 65.1 54 59.3
Psat4g124320 Pisum sativum HOM05D007558 ORTHO05D009245 6.1e-09 65.1 76 47.4
GSVIVG01013748001 Vitis vinifera HOM05D007558 ORTHO05D009245 8.0e-09 64.7 66 51.5
ECA233G1669 Erigeron canadensis HOM05D007558 ORTHO05D009245 1.4e-08 63.9 126 38.1
FAN12G2944 Fragaria x ananassa HOM05D007558 ORTHO05D009245 1.4e-08 63.9 158 31.0
Oeu054057.1 Olea europaea HOM05D007558 ORTHO05D009245 1.4e-08 63.9 147 34.7
Peaxi162Scf00710g00042 Petunia axillaris HOM05D020724 ORTHO05D009245 1.4e-08 63.9 159 35.2
TAR374G1667 Trochodendron aralioides HOM05D007558 ORTHO05D009245 1.4e-08 63.9 62 53.2
ClCG05G025370 Citrullus lanatus HOM05D007558 ORTHO05D009245 1.8e-08 63.5 109 38.5
Gohir.A03G139000 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.8e-08 63.5 63 55.6
CiPaw.05G151900 Carya illinoinensis HOM05D007558 ORTHO05D009245 2.3e-08 63.2 106 39.6
Gohir.A12G143200 Gossypium hirsutum HOM05D007558 ORTHO05D009245 3.0e-08 62.8 58 56.9
Gohir.D12G147900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 3.0e-08 62.8 58 56.9
Gorai.008G159200 Gossypium raimondii HOM05D007558 ORTHO05D009245 3.0e-08 62.8 58 56.9
MELO3C011993.2 Cucumis melo HOM05D007558 ORTHO05D009245 3.9e-08 62.4 104 38.5
FAN07G0793 Fragaria x ananassa HOM05D007558 ORTHO05D009245 3.9e-08 62.4 158 34.2
RcHm_v2.0_Chr4g0443731 Rosa chinensis HOM05D007558 ORTHO05D009245 3.9e-08 62.4 163 32.5
MSTRG.7902 Avicennia marina HOM05D007558 ORTHO05D009245 5.2e-08 62.0 145 34.5
FvH4_4g34300 Fragaria vesca HOM05D007558 ORTHO05D009245 5.2e-08 62.0 176 32.4
FAN22G1900 Fragaria x ananassa HOM05D007558 ORTHO05D009245 5.2e-08 62.0 167 32.3
MBI16_g27096_MAGBIO Magnolia biondii HOM05D007558 ORTHO05D009245 5.2e-08 62.0 68 51.5
MD16G1094000 Malus domestica HOM05D007558 ORTHO05D009245 5.2e-08 62.0 144 34.0
SGA_v2.0_scaffold8G04208 Striga asiatica HOM05D007558 ORTHO05D009245 5.2e-08 62.0 72 47.2
MD13G1093000 Malus domestica HOM05D007558 ORTHO05D009245 6.7e-08 61.6 137 35.0
Migut.E00166 Erythranthe guttata HOM05D007558 ORTHO05D009245 8.8e-08 61.2 56 55.4
Nn3g16851 Nelumbo nucifera HOM05D007558 ORTHO05D009245 8.8e-08 61.2 47 63.8
Nitab4.5_0000034g0280 Nicotiana tabacum HOM05D007558 ORTHO05D009245 8.8e-08 61.2 71 42.3
CANSAT01G1746 Cannabis sativa HOM05D007558 ORTHO05D009245 1.1e-07 60.8 72 48.6
Cpa.g.sc69.52 Carica papaya HOM05D001601 ORTHO05D002628 1.1e-07 60.8 164 37.8
Gohir.D02G161900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.1e-07 60.8 63 52.4
Lsat_1_v5_gn_8_155581 Lactuca sativa HOM05D007558 ORTHO05D009245 1.1e-07 60.8 132 37.9
Nitab4.5_0004636g0010 Nicotiana tabacum HOM05D007558 ORTHO05D009245 1.1e-07 60.8 138 33.3
Prupe.1G252500 Prunus persica HOM05D007558 ORTHO05D009245 1.5e-07 60.5 111 35.1
SalBow2G1747 Salvia bowleyana HOM05D007558 ORTHO05D009245 2.0e-07 60.1 51 54.9
CAN.G126.6 Capsicum annuum HOM05D007558 ORTHO05D009245 5.7e-07 58.5 158 29.1
Aqoxy3G02932 Aquilegia oxysepala HOM05D007558 ORTHO05D009245 9.7e-07 57.8 67 47.8
Lalb_Chr09g0334981 Lupinus albus HOM05D007558 ORTHO05D009245 1.3e-06 57.4 67 50.7
Phvul.003G060900 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 1.7e-06 57.0 53 60.4
PGSC0003DMG400027920 Solanum tuberosum HOM05D007558 ORTHO05D009245 1.7e-06 57.0 59 42.4
Aa31LG4G10480 Aethionema arabicum HOM05D008527 ORTHO05D010701 2.2e-06 56.6 81 40.7
MSTRG.2398 Avicennia marina HOM05D007558 ORTHO05D009245 2.2e-06 56.6 148 33.8
Migut.L01422 Erythranthe guttata HOM05D007558 ORTHO05D009245 3.7e-06 55.8 71 45.1
Glyma.01G030000 Glycine max HOM05D007558 ORTHO05D009245 4.8e-06 55.5 77 42.9
Sed0009378 Sechium edule HOM05D007558 ORTHO05D009245 4.8e-06 55.5 123 35.0
unitig_8.g3152 Utricularia gibba HOM05D007558 ORTHO05D009245 4.8e-06 55.5 48 52.1


User provided reference genes

Program Settings