Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 1.2e-103 379.8 187 100.0
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 1.4e-91 339.7 187 87.7
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.8e-86 322.8 187 82.4
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 3.0e-86 322.0 187 83.4
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.9e-85 319.3 187 81.8
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 2.0e-77 292.7 187 74.9
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 4.8e-76 288.1 187 75.9
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 8.2e-76 287.3 184 75.5
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 8.2e-76 287.3 187 74.9
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 4.5e-74 281.6 187 75.4
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.3e-73 280.0 187 73.8
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 1.4e-72 276.6 184 72.3
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 2.5e-72 275.8 187 69.0
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 1.2e-71 273.5 183 71.6
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 2.1e-71 272.7 184 71.7
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 3.0e-70 268.9 187 70.1
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 3.0e-70 268.9 186 71.5
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 6.7e-70 267.7 187 70.6
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 6.7e-70 267.7 187 69.0
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 1.1e-69 266.9 187 68.4
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 2.6e-69 265.8 187 69.5
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 2.6e-69 265.8 193 66.8
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 4.4e-69 265.0 187 68.4
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 4.4e-69 265.0 187 67.4
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 7.4e-69 264.2 186 69.4
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 1.7e-68 263.1 187 69.0
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 2.2e-68 262.7 187 69.0
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 2.8e-68 262.3 187 70.1
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 6.3e-68 261.2 187 68.4
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 8.2e-68 260.8 187 67.9
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 8.2e-68 260.8 187 67.9
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 1.8e-67 259.6 187 67.4
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 1.8e-67 259.6 187 67.4
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 2.4e-67 259.2 187 67.9
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 4.1e-67 258.5 180 68.9
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 5.3e-67 258.1 187 66.3
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 9.1e-67 257.3 183 68.3
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.2e-66 256.9 187 67.4
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.2e-66 256.9 187 67.4
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 1.2e-66 256.9 187 67.4
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 1.5e-66 256.5 187 66.8
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 1.5e-66 256.5 187 65.8
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 2.0e-66 256.1 187 69.0
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 5.9e-66 254.6 187 65.2
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 7.7e-66 254.2 186 67.2
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.3e-65 253.4 187 66.3
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 1.3e-65 253.4 187 67.9
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 1.3e-65 253.4 184 66.3
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 1.7e-65 253.1 187 65.2
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 1.7e-65 253.1 185 65.9
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 2.2e-65 252.7 187 66.8
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.2e-65 252.7 187 66.8
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 2.2e-65 252.7 185 65.4
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 2.9e-65 252.3 187 65.2
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 3.8e-65 251.9 187 67.9
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 3.8e-65 251.9 186 65.6
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 5.0e-65 251.5 189 66.7
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 5.0e-65 251.5 187 64.2
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 6.5e-65 251.1 187 65.2
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 8.5e-65 250.8 183 66.7
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 8.5e-65 250.8 183 66.7
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 8.5e-65 250.8 187 64.7
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 8.5e-65 250.8 183 66.1
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.1e-64 250.4 187 67.4
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 1.5e-64 250.0 179 68.2
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 1.5e-64 250.0 183 67.8
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 1.9e-64 249.6 183 65.6
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 2.5e-64 249.2 186 65.6
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 3.2e-64 248.8 187 65.8
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 4.2e-64 248.4 183 66.7
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.6e-63 246.5 183 67.2
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 1.6e-63 246.5 183 65.6
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 3.6e-63 245.4 150 78.0
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 4.7e-63 245.0 184 65.2
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 4.7e-63 245.0 184 66.3
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 6.1e-63 244.6 184 64.7
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 1.0e-62 243.8 186 63.4
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.4e-62 243.4 184 64.7
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 1.4e-62 243.4 183 66.1
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 1.8e-62 243.0 187 64.2
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 2.3e-62 242.7 186 62.4
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 4.0e-62 241.9 184 64.1
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 5.2e-62 241.5 183 64.5
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 8.8e-62 240.7 184 62.0
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.1e-61 240.4 169 68.0
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 1.5e-61 240.0 183 63.9
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 2.0e-61 239.6 183 65.6
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 4.4e-61 238.4 183 65.0
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 4.4e-61 238.4 208 58.2
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 9.7e-61 237.3 184 63.0
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 9.7e-61 237.3 185 63.8
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 9.7e-61 237.3 184 62.5
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.3e-60 236.9 180 65.6
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.2e-60 236.1 184 63.0
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 2.2e-60 236.1 184 63.0
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 3.7e-60 235.3 189 61.9
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 6.3e-60 234.6 183 64.5
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 8.2e-60 234.2 189 62.4
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 1.1e-59 233.8 189 61.4
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 1.4e-59 233.4 184 65.2
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 1.2e-58 230.3 184 64.7
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 1.6e-58 229.9 184 58.7
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 2.0e-58 229.6 182 63.7
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 2.0e-58 229.6 189 60.3
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 2.0e-58 229.6 189 60.3
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 2.1e-55 219.5 166 66.9
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 3.6e-55 218.8 187 62.0
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 2.3e-54 216.1 166 64.5
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 4.0e-54 215.3 153 66.7
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 4.0e-54 215.3 154 66.9
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 8.8e-54 214.2 182 63.2
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 3.4e-53 212.2 166 65.1
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 7.5e-53 211.1 183 54.1
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.8e-52 209.1 204 55.4
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.1e-51 207.2 183 53.6
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 4.1e-51 205.3 189 57.7
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 7.7e-50 201.1 185 53.0
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.9e-48 196.4 182 51.1
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 2.3e-46 189.5 201 53.7
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 4.0e-46 188.7 183 49.7
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.3e-44 183.7 184 53.8
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 2.2e-44 183.0 150 62.7
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 3.7e-44 182.2 185 47.0
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.4e-43 180.3 187 51.9
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.6e-42 176.8 153 59.5
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 1.7e-41 173.3 187 54.5
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 1.9e-40 169.9 161 59.6
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 5.7e-37 158.3 104 71.2
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 7.8e-34 147.9 113 61.9
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 8.3e-28 127.9 117 56.4
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 8.3e-28 127.9 104 56.7
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 3.5e-26 122.5 154 44.8
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.7e-25 120.2 98 60.2
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 1.4e-22 110.5 167 35.9
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 7.5e-21 104.8 72 66.7
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 1.4e-19 100.5 170 30.0
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 5.1e-17 92.0 62 66.1
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 1.9e-16 90.1 72 55.6
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 1.2e-15 87.4 80 57.5
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 6.2e-15 85.1 83 60.2
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.4e-11 73.9 175 27.4
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 8.6e-09 64.7 158 29.1
Ah.02g118500 Amaranthus hybridus HOM05D047171 ORTHO05D038202 4.3e-08 62.4 36 83.3
QL03p009034 Quercus lobata HOM05D000946 ORTHO05D006696 4.0e-06 55.8 38 63.2


User provided reference genes

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