Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0000840 Simmondsia chinensis HOM05D007493 ORTHO05D009465 5.9e-26 120.2 64 100.0
TAR622G0701 Trochodendron aralioides HOM05D007493 ORTHO05D009465 7.5e-21 103.2 64 79.7
Atru.chr11.2184 Acer truncatum HOM05D007493 ORTHO05D009465 9.8e-21 102.8 64 81.2
CiPaw.05G177500 Carya illinoinensis HOM05D007493 ORTHO05D009465 1.3e-20 102.4 62 82.3
Hma1.2p1_0079F.1_g041210 Hydrangea macrophylla HOM05D007493 ORTHO05D009465 1.3e-20 102.4 64 81.2
Atru.chr2.2324 Acer truncatum HOM05D007493 ORTHO05D009465 1.7e-20 102.1 64 81.2
MELO3C010701.2 Cucumis melo HOM05D007493 ORTHO05D009465 2.2e-20 101.7 64 82.8
CsaV3_2G025040 Cucumis sativus L. HOM05D007493 ORTHO05D009465 2.9e-20 101.3 64 82.8
Manes.06G112900 Manihot esculenta HOM05D007493 ORTHO05D009465 8.3e-20 99.8 64 78.1
Manes.14G056800 Manihot esculenta HOM05D007493 ORTHO05D009465 1.4e-19 99.0 64 78.1
Duzib251G0942 Durio zibethinus HOM05D007493 ORTHO05D009465 2.4e-19 98.2 64 76.6
MBI10_g16722_MAGBIO Magnolia biondii HOM05D007493 ORTHO05D009465 5.4e-19 97.1 64 76.6
Prupe.5G160800 Prunus persica HOM05D007493 ORTHO05D009465 5.4e-19 97.1 64 76.6
Aqoxy5G03641 Aquilegia oxysepala HOM05D007493 ORTHO05D009465 9.2e-19 96.3 62 77.4
Cfa009257 Carpinus fangiana HOM05D007493 ORTHO05D009465 9.2e-19 96.3 64 76.6
Haze_12286 Corylus avellana HOM05D007493 ORTHO05D009465 9.2e-19 96.3 64 76.6
Thecc.02G266500 Theobroma cacao HOM05D007493 ORTHO05D009465 9.2e-19 96.3 64 75.0
Cpa.g.sc33.74 Carica papaya HOM05D007493 ORTHO05D009465 1.2e-18 95.9 64 73.4
COL.COLO4_23524 Corchorus olitorius HOM05D007493 ORTHO05D009465 1.2e-18 95.9 65 76.9
Nn4g22523 Nelumbo nucifera HOM05D007493 ORTHO05D009465 1.2e-18 95.9 65 78.5
HPP92_009922 Vanilla planifolia HOM05D007493 ORTHO05D009465 1.2e-18 95.9 64 75.0
Nn3g16632 Nelumbo nucifera HOM05D007493 ORTHO05D009465 1.6e-18 95.5 65 76.9
CANSAT01G0706 Cannabis sativa HOM05D007493 ORTHO05D009465 2.7e-18 94.7 60 78.3
Lj4g0017514 Lotus japonicus HOM05D007493 ORTHO05D009465 2.7e-18 94.7 65 76.9
Sed0018590 Sechium edule HOM05D007493 ORTHO05D009465 2.7e-18 94.7 64 75.0
CSS0003793 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 3.5e-18 94.4 65 76.9
Duzib248G1419 Durio zibethinus HOM05D007493 ORTHO05D009465 3.5e-18 94.4 64 73.4
Nitab4.5_0000041g0060 Nicotiana tabacum HOM05D007493 ORTHO05D009465 3.5e-18 94.4 64 75.0
PSO063G3855 Papaver somniferum HOM05D007493 ORTHO05D009465 3.5e-18 94.4 64 76.6
THA.LOC104825545 Tarenaya hassleriana HOM05D007493 ORTHO05D009465 3.5e-18 94.4 64 75.0
PGSC0003DMG400010781 Solanum tuberosum HOM05D007493 ORTHO05D009465 4.6e-18 94.0 64 75.0
Gohir.D12G150200 Gossypium hirsutum HOM05D007493 ORTHO05D009465 5.9e-18 93.6 62 74.2
Gorai.008G161700 Gossypium raimondii HOM05D007493 ORTHO05D009465 5.9e-18 93.6 62 74.2
Gohir.A12G145600 Gossypium hirsutum HOM05D007493 ORTHO05D009465 7.8e-18 93.2 62 72.6
Manes.13G020200 Manihot esculenta HOM05D007493 ORTHO05D009465 7.8e-18 93.2 65 73.8
Nitab4.5_0013418g0010 Nicotiana tabacum HOM05D007493 ORTHO05D009465 7.8e-18 93.2 64 73.4
Glyma.05G172800 Glycine max HOM05D007493 ORTHO05D009465 1.0e-17 92.8 65 76.9
Glyma.08G130200 Glycine max HOM05D007493 ORTHO05D009465 1.0e-17 92.8 65 76.9
MD14G1166500 Malus domestica HOM05D007493 ORTHO05D009465 1.0e-17 92.8 65 75.4
PSO067G0033 Papaver somniferum HOM05D007493 ORTHO05D009465 1.0e-17 92.8 64 75.0
Peaxi162Scf00128g00547 Petunia axillaris HOM05D007493 ORTHO05D009465 1.0e-17 92.8 64 73.4
Migut.K00631 Erythranthe guttata HOM05D007493 ORTHO05D009465 1.3e-17 92.4 64 71.9
Lsat_1_v5_gn_3_30001 Lactuca sativa HOM05D007493 ORTHO05D009465 1.3e-17 92.4 64 71.9
HanXRQChr17g0569621 Helianthus annuus HOM05D007493 ORTHO05D009465 1.7e-17 92.0 64 71.9
Lsat_1_v5_gn_4_3821 Lactuca sativa HOM05D007493 ORTHO05D009465 1.7e-17 92.0 64 71.9
Atru.BG.141.p Acer truncatum HOM05D007493 ORTHO05D009465 2.3e-17 91.7 58 79.3
Manes.12G019900 Manihot esculenta HOM05D007493 ORTHO05D009465 2.3e-17 91.7 65 73.8
HanXRQChr12g0385761 Helianthus annuus HOM05D007493 ORTHO05D009465 5.0e-17 90.5 64 70.3
SalBow8G1793 Salvia bowleyana HOM05D007493 ORTHO05D009465 5.0e-17 90.5 64 70.3
PGSC0003DMG400007257 Solanum tuberosum HOM05D007493 ORTHO05D009465 5.0e-17 90.5 64 73.4
Gohir.D01G152700 Gossypium hirsutum HOM05D007493 ORTHO05D009465 6.6e-17 90.1 64 70.3
Potri.015G087301 Populus trichocarpa HOM05D007493 ORTHO05D009465 6.6e-17 90.1 64 73.4
RcHm_v2.0_Chr7g0191781 Rosa chinensis HOM05D007493 ORTHO05D009465 6.6e-17 90.1 65 73.8
arahy.Tifrunner.gnm1.ann1.48Y6QT Arachis hypogaea HOM05D007493 ORTHO05D009465 8.6e-17 89.7 65 70.8
arahy.Tifrunner.gnm1.ann1.SE4B7G Arachis hypogaea HOM05D007493 ORTHO05D009465 1.1e-16 89.4 61 70.5
A07p32370 Brassica napus HOM05D007493 ORTHO05D009465 2.5e-16 88.2 64 70.3
BraA07t30860Z Brassica rapa HOM05D007493 ORTHO05D009465 2.5e-16 88.2 64 70.3
ClCG08G017580 Citrullus lanatus HOM05D007493 ORTHO05D009465 2.5e-16 88.2 84 61.9
DCAR_026494 Daucus carota HOM05D007493 ORTHO05D009465 2.5e-16 88.2 64 68.8
MD06G1161100 Malus domestica HOM05D007493 ORTHO05D009465 2.5e-16 88.2 65 70.8
Ciclev10033289m.g Citrus clementina HOM05D007493 ORTHO05D009465 3.3e-16 87.8 62 67.7
Medtr8g089640 Medicago truncatula HOM05D007493 ORTHO05D009465 3.3e-16 87.8 62 74.2
Aa31LG4G12320 Aethionema arabicum HOM05D007493 ORTHO05D009465 4.3e-16 87.4 64 70.3
BcaB03g15163 Brassica carinata HOM05D007493 ORTHO05D009465 4.3e-16 87.4 64 70.3
BcaB05g24314 Brassica carinata HOM05D007493 ORTHO05D009465 4.3e-16 87.4 64 70.3
BcaC03g14872 Brassica carinata HOM05D007493 ORTHO05D009465 4.3e-16 87.4 64 70.3
BcaC08g46034 Brassica carinata HOM05D007493 ORTHO05D000035 4.3e-16 87.4 64 70.3
BcaC08g46204 Brassica carinata HOM05D001456 ORTHO05D009465 4.3e-16 87.4 64 70.3
A02p14480 Brassica napus HOM05D007493 ORTHO05D009465 4.3e-16 87.4 64 70.3
C02p23440 Brassica napus HOM05D007493 ORTHO05D009465 4.3e-16 87.4 64 70.3
C06p38280 Brassica napus HOM05D007493 ORTHO05D009465 4.3e-16 87.4 64 70.3
C06p42230 Brassica napus HOM05D007493 ORTHO05D009465 4.3e-16 87.4 64 70.3
BolC2t08476H Brassica oleracea HOM05D007493 ORTHO05D009465 4.3e-16 87.4 64 70.3
BraA02t06512Z Brassica rapa HOM05D007493 ORTHO05D009465 4.3e-16 87.4 64 70.3
BraA07t31062Z Brassica rapa HOM05D007493 ORTHO05D009465 4.3e-16 87.4 64 70.3
Thhalv10019416m.g Eutrema salsugineum HOM05D007493 ORTHO05D009465 4.3e-16 87.4 64 70.3
Os01g0908400 Oryza sativa ssp. japonica HOM05D007493 ORTHO05D009465 4.3e-16 87.4 61 68.9
TWI18G0390 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 4.3e-16 87.4 64 68.8
Gorai.002G189100 Gossypium raimondii HOM05D007493 ORTHO05D009465 5.6e-16 87.0 64 68.8
Lalb_Chr07g0185531 Lupinus albus HOM05D007493 ORTHO05D009465 5.6e-16 87.0 58 74.1
TWI36G0140 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 7.3e-16 86.7 64 68.8
AL2G26520 Arabidopsis lyrata HOM05D007493 ORTHO05D009465 9.5e-16 86.3 64 68.8
AT1G67785 Arabidopsis thaliana HOM05D007493 ORTHO05D009465 9.5e-16 86.3 64 68.8
Carub.0002s1423 Capsella rubella HOM05D007493 ORTHO05D009465 1.2e-15 85.9 64 68.8
Lalb_Chr12g0204101 Lupinus albus HOM05D007493 ORTHO05D009465 1.2e-15 85.9 58 72.4
Phvul.002G252800 Phaseolus vulgaris HOM05D007493 ORTHO05D009465 1.6e-15 85.5 63 69.8
CARHR060410 Cardamine hirsuta HOM05D007493 ORTHO05D009465 2.1e-15 85.1 64 67.2
Cc11_g16110 Coffea canephora HOM05D007493 ORTHO05D009465 2.1e-15 85.1 59 71.2
ATR0824G181 Amborella trichopoda HOM05D007493 ORTHO05D009465 3.6e-15 84.3 64 67.2
PGR119G0352 Punica granatum HOM05D007493 ORTHO05D009465 2.3e-14 81.6 65 66.2
SHI26864 Sapria himalayana HOM05D007493 ORTHO05D009465 3.1e-14 81.3 62 67.7
PGR102G3362 Punica granatum HOM05D007493 ORTHO05D009465 5.2e-14 80.5 61 63.9
Dinv11035 Davidia involucrata HOM05D007493 ORTHO05D009465 4.1e-11 70.9 35 91.4
GSVIVG01000581001 Vitis vinifera HOM05D007493 ORTHO05D009465 9.2e-11 69.7 62 56.5
Solyc05g013905.1 Solanum lycopersicum HOM05D007493 ORTHO05D009465 2.7e-10 68.2 35 85.7
Zm00001eb365410 Zea mays HOM05D007493 ORTHO05D009465 1.7e-09 65.5 36 75.0
CSS0017909 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 8.6e-09 63.2 49 59.2
Sabra15G0110700 Salix brachista HOM05D000069 ORTHO05D000060 2.5e-08 61.6 35 80.0
MD15G1332800 Malus domestica HOM05D007493 ORTHO05D009465 1.2e-07 59.3 39 71.8
MD03G1151700 Malus domestica HOM05D007493 ORTHO05D009465 1.8e-06 55.5 36 72.2
BcaB03g15377 Brassica carinata HOM05D000053 ORTHO05D000035 5.2e-06 53.9 64 53.1
Ca_17793_v3 Cicer arietinum L. HOM05D007493 ORTHO05D009465 6.8e-06 53.5 62 58.1
MD07G1129300 Malus domestica HOM05D007493 ORTHO05D009465 6.8e-06 53.5 36 69.4


User provided reference genes

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