Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0000830 Simmondsia chinensis HOM05D006855 ORTHO05D008695 2.4e-209 731.9 363 100.0
AUR62024216 Chenopodium quinoa HOM05D006855 ORTHO05D008695 8.4e-109 397.9 318 61.0
EL10As2g23185 Beta vulgaris HOM05D006855 ORTHO05D008695 3.2e-100 369.4 302 60.9
Hund25410 Selenicereus undatus HOM05D006855 ORTHO05D008695 7.1e-100 368.2 341 59.8
Ah.02g130370 Amaranthus hybridus HOM05D006855 ORTHO05D008695 1.3e-98 364.0 277 64.3
GSVIVG01000584001 Vitis vinifera HOM05D006855 ORTHO05D008695 5.1e-98 362.1 287 65.2
AUR62005523 Chenopodium quinoa HOM05D006855 ORTHO05D008695 2.9e-93 346.3 242 68.6
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 1.1e-92 344.4 282 63.1
TAR629G1507 Trochodendron aralioides HOM05D006855 ORTHO05D008695 1.1e-92 344.4 280 61.8
QL03p056156 Quercus lobata HOM05D006855 ORTHO05D008695 4.2e-92 342.4 284 61.3
Potri.010G051200 Populus trichocarpa HOM05D006855 ORTHO05D008695 5.4e-92 342.0 287 61.3
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 7.1e-92 341.7 305 59.3
Dinv14753 Davidia involucrata HOM05D006855 ORTHO05D008695 9.3e-92 341.3 313 57.2
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 9.3e-92 341.3 281 64.1
CSS0002421 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.6e-91 340.5 293 60.8
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.6e-91 339.0 291 60.5
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.6e-91 339.0 291 60.5
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 1.3e-90 337.4 288 60.1
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.3e-90 336.7 291 60.5
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.3e-90 336.7 291 60.5
Nn3g16630 Nelumbo nucifera HOM05D006855 ORTHO05D008695 6.7e-90 335.1 295 57.6
Duzib248G0606 Durio zibethinus HOM05D006855 ORTHO05D008695 4.3e-89 332.4 321 54.2
Thecc.02G266900 Theobroma cacao HOM05D006855 ORTHO05D008695 4.3e-89 332.4 290 58.6
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 5.6e-89 332.0 276 61.2
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 2.8e-88 329.7 285 60.7
Lsat_1_v5_gn_8_153661 Lactuca sativa HOM05D006855 ORTHO05D008695 2.8e-88 329.7 296 57.8
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 4.8e-88 328.9 283 58.0
TWI75G0344 Tripterygium wilfordii HOM05D006855 ORTHO05D008695 6.2e-88 328.6 277 61.0
Ciclev10031545m.g Citrus clementina HOM05D006855 ORTHO05D008695 1.4e-87 327.4 291 57.7
Cc11_g16140 Coffea canephora HOM05D006855 ORTHO05D008695 9.0e-87 324.7 279 60.9
Gohir.D12G150600 Gossypium hirsutum HOM05D006855 ORTHO05D008695 1.3e-85 320.9 285 58.6
PSO210G7557 Papaver somniferum HOM05D006855 ORTHO05D008695 1.3e-85 320.9 286 59.1
Aqoxy3G00656 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 1.7e-85 320.5 271 60.5
Aqoxy3G01366 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 1.7e-85 320.5 271 60.5
MBI19_g16323_MAGBIO Magnolia biondii HOM05D006855 ORTHO05D008695 2.2e-85 320.1 319 53.9
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 2.9e-85 319.7 267 61.0
Nitab4.5_0015117g0010 Nicotiana tabacum HOM05D006855 ORTHO05D008695 1.9e-84 317.0 282 58.2
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 2.4e-84 316.6 284 57.4
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 2.4e-84 316.6 290 58.6
Gorai.008G162100 Gossypium raimondii HOM05D006855 ORTHO05D008695 5.5e-84 315.5 285 57.9
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 7.1e-84 315.1 287 55.7
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 1.2e-83 314.3 287 55.7
PGSC0003DMG400022710 Solanum tuberosum HOM05D006855 ORTHO05D008695 1.2e-83 314.3 274 58.0
Carub.0005s0400 Capsella rubella HOM05D006855 ORTHO05D008695 2.1e-83 313.5 286 56.3
Gohir.A12G146000 Gossypium hirsutum HOM05D006855 ORTHO05D008695 2.7e-83 313.2 285 58.6
THA.LOC104825678 Tarenaya hassleriana HOM05D006855 ORTHO05D008695 2.7e-83 313.2 315 52.7
MSTRG.548 Avicennia marina HOM05D006855 ORTHO05D008695 3.5e-83 312.8 297 55.9
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 4.6e-83 312.4 276 58.3
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 4.6e-83 312.4 276 58.0
Thhalv10004274m.g Eutrema salsugineum HOM05D006855 ORTHO05D008695 4.6e-83 312.4 273 56.4
Sopen01g004390 Solanum pennellii HOM05D006855 ORTHO05D008695 4.6e-83 312.4 284 55.3
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 1.0e-82 311.2 277 59.9
CiPaw.05G176800 Carya illinoinensis HOM05D006855 ORTHO05D008695 3.0e-82 309.7 277 60.6
Psat5g092640 Pisum sativum HOM05D006855 ORTHO05D008695 3.9e-82 309.3 312 52.2
COL.COLO4_23530 Corchorus olitorius HOM05D006855 ORTHO05D008695 5.1e-82 308.9 270 57.8
Lalb_Chr11g0075551 Lupinus albus HOM05D006855 ORTHO05D008695 5.1e-82 308.9 315 52.4
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 8.7e-82 308.1 283 56.2
Sp2g15320 Schrenkiella parvula HOM05D006855 ORTHO05D008695 1.1e-81 307.8 275 56.4
Medtr3g086360 Medicago truncatula HOM05D006855 ORTHO05D008695 2.5e-81 306.6 302 53.6
CAN.G379.20 Capsicum annuum HOM05D006855 ORTHO05D008695 3.3e-81 306.2 295 55.3
arahy.Tifrunner.gnm1.ann1.FYV5AX Arachis hypogaea HOM05D006855 ORTHO05D008695 4.3e-81 305.8 319 50.8
ECA233G5842 Erigeron canadensis HOM05D000068 ORTHO05D000084 5.6e-81 305.4 266 59.0
VMungo1383G3215 Vigna mungo HOM05D000933 ORTHO05D000820 5.6e-81 305.4 321 52.3
C07p35130 Brassica napus HOM05D006855 ORTHO05D008695 9.6e-81 304.7 276 57.2
Lj6g0028045 Lotus japonicus HOM05D006855 ORTHO05D008695 9.6e-81 304.7 303 52.5
Sed0018660 Sechium edule HOM05D006855 ORTHO05D008695 1.3e-80 304.3 279 56.6
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 1.3e-80 304.3 274 59.1
AT3G26115 Arabidopsis thaliana HOM05D006855 ORTHO05D008695 2.1e-80 303.5 320 52.5
Phvul.001G256400 Phaseolus vulgaris HOM05D006855 ORTHO05D008695 2.1e-80 303.5 295 55.3
TPR.G5676 Trifolium pratense HOM05D006855 ORTHO05D008695 2.1e-80 303.5 300 52.0
CARHR147120 Cardamine hirsuta HOM05D006855 ORTHO05D008695 3.7e-80 302.8 273 57.1
Migut.K00633 Erythranthe guttata HOM05D006855 ORTHO05D008695 1.1e-79 301.2 274 59.1
BolC7t44041H Brassica oleracea HOM05D006855 ORTHO05D008695 5.3e-79 298.9 312 52.6
BcaC06g33927 Brassica carinata HOM05D006855 ORTHO05D008695 6.9e-79 298.5 312 52.6
BraA06t27139Z Brassica rapa HOM05D006855 ORTHO05D008695 9.0e-79 298.1 279 55.9
Prupe.1G240700 Prunus persica HOM05D006855 ORTHO05D008695 3.4e-78 296.2 210 69.0
BcaC06g31090 Brassica carinata HOM05D006855 ORTHO05D008695 7.6e-78 295.0 295 54.9
ClCG05G026110 Citrullus lanatus HOM05D006855 ORTHO05D008695 1.3e-77 294.3 280 54.6
Glyma.11G244400 Glycine max HOM05D006855 ORTHO05D008695 1.3e-77 294.3 308 52.6
A06p42230 Brassica napus HOM05D006855 ORTHO05D008695 1.7e-77 293.9 279 55.2
PGR083G2447 Punica granatum HOM05D006855 ORTHO05D008695 1.7e-77 293.9 295 55.3
CDE02G0600 Ceratophyllum demersum HOM05D006855 ORTHO05D008695 3.8e-77 292.7 285 54.7
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 8.4e-77 291.6 283 55.8
AL5G14830 Arabidopsis lyrata HOM05D006855 ORTHO05D008695 8.4e-77 291.6 288 53.5
Haze_12292 Corylus avellana HOM05D006855 ORTHO05D008695 6.0e-75 285.4 344 48.3
SalBow2G0666 Salvia bowleyana HOM05D006855 ORTHO05D008695 6.0e-75 285.4 266 56.8
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 7.9e-75 285.0 281 53.4
FvH4_4g25240 Fragaria vesca HOM05D006855 ORTHO05D008695 5.1e-74 282.3 251 59.4
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 1.9e-73 280.4 288 56.2
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 1.8e-71 273.9 265 53.2
vmacro16160 Vaccinium macrocarpon HOM05D006855 ORTHO05D008695 1.1e-60 238.0 284 48.9
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 1.6e-59 234.2 276 44.2
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 2.0e-57 227.3 261 47.5
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 1.5e-54 217.6 205 55.1
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.5e-52 210.3 214 52.3
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 4.2e-44 183.0 263 41.8
SMO327G0033 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.2e-41 174.9 215 47.4
Ca_25129_v3 Cicer arietinum L. HOM05D006855 ORTHO05D008695 4.4e-41 172.9 162 55.6
SMO203G0223 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.4e-39 167.2 216 45.4
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 9.4e-36 155.2 284 35.6
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 6.8e-34 149.1 247 38.5
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.7e-29 134.4 220 40.0
arahy.Tifrunner.gnm1.ann1.74BAAJ Arachis hypogaea HOM05D006855 ORTHO05D008695 9.5e-28 128.6 158 46.8
Sabra10G0018700 Salix brachista HOM05D000933 ORTHO05D000820 4.7e-27 126.3 117 52.1
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 7.5e-17 92.4 115 48.7
ECA233G3820 Erigeron canadensis HOM05D006855 ORTHO05D008695 2.2e-16 90.9 64 67.2
Carub.0005s0511 Capsella rubella HOM05D006855 ORTHO05D008695 1.2e-14 85.1 108 46.3
FAN18G3688 Fragaria x ananassa HOM05D006855 ORTHO05D008695 7.5e-09 65.9 44 68.2
FAN14G3171 Fragaria x ananassa HOM05D006855 ORTHO05D008695 9.8e-09 65.5 43 69.8
Cpa.g.sc33.79 Carica papaya HOM05D006855 ORTHO05D008695 1.3e-08 65.1 43 69.8
SEGI_08498 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 1.9e-07 61.2 43 67.4
CSS0015338 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 4.1e-07 60.1 72 44.4
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 7.0e-07 59.3 256 27.0
FAN08G3042 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.7e-06 57.4 38 65.8


User provided reference genes

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