Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 0.0e+00 1252.3 621 100.0
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 7.2e-270 933.7 654 71.3
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.3e-258 896.3 639 69.8
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 1.2e-253 879.8 624 69.2
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 3.6e-253 878.2 634 70.7
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 3.4e-251 871.7 626 67.9
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 3.7e-250 868.2 622 68.3
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.1e-249 866.7 623 69.0
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 2.1e-248 862.4 621 67.8
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 8.6e-247 857.1 624 66.3
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 3.6e-245 851.7 622 67.5
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 8.9e-244 847.0 622 65.6
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 3.4e-243 845.1 622 66.6
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 4.4e-243 844.7 624 66.7
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 1.9e-241 839.3 628 65.6
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 9.2e-241 837.0 623 66.0
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 1.6e-240 836.3 624 66.0
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 4.6e-240 834.7 622 65.3
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 3.0e-239 832.0 622 65.6
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 8.1e-237 823.9 623 64.8
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 1.5e-235 819.7 623 63.6
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 2.9e-234 815.5 622 65.1
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 6.4e-234 814.3 622 65.9
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 8.4e-234 813.9 622 65.9
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 2.1e-232 809.3 604 65.6
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 2.3e-231 805.8 626 63.7
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 5.1e-231 804.7 626 63.3
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 7.3e-230 800.8 628 64.2
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 6.2e-229 797.7 628 64.2
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.8e-228 796.2 624 63.8
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 5.2e-228 794.7 624 61.9
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 5.2e-228 794.7 624 61.9
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 1.2e-227 793.5 628 62.6
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 3.8e-226 788.5 629 62.6
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 7.1e-225 784.3 625 62.9
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 1.3e-223 780.0 622 61.9
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 2.3e-223 779.2 621 63.0
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.5e-222 775.8 622 61.7
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 1.6e-221 773.1 626 61.7
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 8.1e-221 770.8 624 62.3
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 1.1e-220 770.4 621 60.7
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 1.4e-220 770.0 621 61.0
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 1.8e-220 769.6 635 62.2
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 2.0e-219 766.1 621 60.9
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 2.9e-218 762.3 624 61.1
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 3.8e-218 761.9 621 60.7
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 6.4e-218 761.1 625 60.0
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 8.4e-218 760.8 624 60.6
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 8.4e-218 760.8 624 60.6
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 8.4e-218 760.8 692 57.2
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 1.1e-217 760.4 625 61.1
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 3.2e-217 758.8 622 62.4
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 3.2e-217 758.8 633 59.7
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 9.3e-217 757.3 622 62.2
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 7.9e-216 754.2 621 60.2
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 1.3e-215 753.4 626 60.4
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 1.8e-215 753.1 622 60.8
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 3.0e-215 752.3 626 60.1
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 1.1e-214 750.4 622 61.9
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 2.5e-214 749.2 622 59.5
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 2.5e-214 749.2 624 60.3
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 3.3e-214 748.8 623 59.6
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 5.6e-214 748.0 626 60.2
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 2.1e-213 746.1 622 59.3
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 8.1e-213 744.2 623 58.7
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.8e-212 743.0 623 60.4
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 9.0e-212 740.7 622 58.0
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 4.9e-210 734.9 622 59.8
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 1.2e-208 730.3 620 57.6
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 2.1e-208 729.6 620 57.4
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 2.1e-208 729.6 620 57.6
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 2.1e-208 729.6 629 59.3
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 2.7e-208 729.2 623 59.1
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 4.6e-208 728.4 623 58.6
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 7.9e-208 727.6 621 58.6
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 1.0e-207 727.2 620 57.3
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 1.0e-207 727.2 629 58.7
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 1.3e-207 726.9 620 57.3
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 2.3e-207 726.1 620 57.1
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 3.9e-207 725.3 573 62.8
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 2.5e-206 722.6 632 57.0
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 3.3e-206 722.2 622 58.2
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 3.3e-206 722.2 529 65.2
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 1.1e-204 717.2 664 55.9
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 9.0e-204 714.1 621 57.5
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 3.4e-203 712.2 587 62.0
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 1.7e-202 709.9 629 57.7
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 2.9e-202 709.1 657 56.8
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 4.2e-201 705.3 622 56.4
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 5.5e-201 704.9 623 56.7
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 1.2e-200 703.7 686 53.4
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 3.0e-199 699.1 621 56.0
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 1.3e-194 683.7 622 55.8
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 1.4e-193 680.2 528 65.2
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 5.7e-190 668.3 624 54.2
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 3.2e-185 652.5 621 53.5
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 2.0e-179 633.3 621 54.4
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.4e-172 610.5 638 49.7
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.4e-172 610.5 638 49.7
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 4.1e-172 609.0 636 49.8
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 5.9e-171 605.1 628 51.6
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 3.2e-169 599.4 616 51.1
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.8e-165 586.3 635 50.1
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 4.1e-156 555.8 612 48.2
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 4.5e-155 552.4 487 58.5
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 1.7e-154 550.4 629 49.3
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 1.5e-150 537.3 530 53.8
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 1.5e-142 510.8 656 43.3
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 2.2e-141 506.9 633 43.4
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 9.5e-137 491.5 387 61.8
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 4.7e-136 489.2 405 58.5
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 6.2e-128 462.2 583 41.7
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.2e-117 427.2 406 56.9
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 3.3e-113 413.3 478 46.0
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.2e-110 404.8 409 53.3
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 5.8e-86 322.8 754 30.8
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 1.4e-71 275.0 630 31.0
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 1.1e-68 265.4 650 30.8
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.1e-60 238.8 247 46.2
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 7.4e-57 226.1 215 51.6
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 7.4e-57 226.1 389 36.8
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 2.4e-55 221.1 272 46.0
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.0e-50 203.8 130 73.8
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.2e-49 202.2 164 64.0
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 2.7e-43 181.0 141 61.0
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.9e-37 161.0 432 28.9
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 1.5e-33 148.7 154 51.3
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.5e-33 148.7 112 58.9
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 3.7e-32 144.1 168 47.6
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.2e-30 139.0 95 64.2
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 5.9e-30 136.7 103 65.0
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 3.7e-24 117.5 147 43.5
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 3.9e-21 107.5 125 49.6
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.1e-18 99.4 234 31.6
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 5.8e-17 93.6 130 38.5
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 4.9e-16 90.5 155 38.7
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 1.4e-15 89.0 81 60.5
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 9.2e-15 86.3 107 44.9
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 9.2e-15 86.3 67 58.2
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 3.9e-13 80.9 76 55.3
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 1.5e-12 79.0 67 53.7
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 1.6e-11 75.5 69 52.2
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 1.6e-11 75.5 52 69.2
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 8.1e-11 73.2 49 69.4
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 8.1e-11 73.2 54 61.1
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 4.4e-09 67.4 51 60.8
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 7.6e-09 66.6 62 53.2
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 8.4e-08 63.2 58 50.0
Lsat_1_v5_gn_4_120120 Lactuca sativa HOM05D001824 ORTHO05D006578 1.9e-07 62.0 57 52.6
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 2.1e-06 58.5 89 43.8
Lsat_1_v5_gn_4_129760 Lactuca sativa HOM05D001733 ORTHO05D001882 6.0e-06 57.0 45 62.2


User provided reference genes

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