Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 0.0e+00 1204.5 603 100.0
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 4.7e-242 841.3 546 74.2
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 1.4e-241 839.7 556 72.8
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 6.4e-239 830.9 535 73.1
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 8.4e-239 830.5 556 71.4
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 1.7e-236 822.8 548 73.4
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 5.6e-235 817.8 546 71.8
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 1.3e-234 816.6 559 71.7
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 1.8e-233 812.8 541 72.3
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 1.2e-232 810.1 571 69.2
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 2.0e-232 809.3 547 71.7
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 3.4e-232 808.5 536 72.6
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 3.8e-231 805.1 535 72.0
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 4.9e-231 804.7 537 73.2
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 4.9e-231 804.7 551 69.0
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.1e-229 799.3 536 71.8
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 1.8e-228 796.2 569 69.9
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 3.9e-228 795.0 530 73.4
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 5.1e-228 794.7 566 67.5
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 1.1e-227 793.5 608 65.8
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 1.1e-227 793.5 518 74.5
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 1.5e-227 793.1 535 71.8
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 2.5e-227 792.3 538 70.4
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 3.3e-227 792.0 566 67.0
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 7.4e-227 790.8 547 69.5
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 9.6e-227 790.4 544 71.0
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 1.3e-226 790.0 566 67.1
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 2.1e-226 789.3 609 64.2
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 2.1e-226 789.3 562 69.2
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 8.1e-226 787.3 563 68.7
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 1.4e-225 786.6 567 66.3
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 1.4e-225 786.6 546 71.1
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 2.4e-225 785.8 579 67.5
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 1.2e-224 783.5 557 69.7
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 2.0e-224 782.7 537 70.6
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 9.9e-224 780.4 537 70.8
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 9.9e-224 780.4 525 71.0
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 2.2e-223 779.2 552 68.5
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 6.4e-223 777.7 558 67.7
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 2.5e-222 775.8 540 68.7
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 2.5e-222 775.8 579 65.8
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 4.2e-222 775.0 538 69.3
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 4.2e-222 775.0 527 69.6
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 9.3e-222 773.9 538 69.3
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 9.3e-222 773.9 538 69.1
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 9.3e-222 773.9 538 69.1
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 1.2e-221 773.5 574 66.6
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 1.6e-221 773.1 538 69.3
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 2.1e-221 772.7 538 69.1
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 2.7e-221 772.3 545 68.3
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 3.5e-221 771.9 563 66.8
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 6.0e-221 771.2 572 65.7
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 6.0e-221 771.2 543 66.9
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 1.0e-220 770.4 558 65.9
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 2.3e-220 769.2 525 70.1
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 2.3e-220 769.2 548 68.2
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 3.0e-220 768.8 530 71.5
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 5.1e-220 768.1 530 70.2
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 6.7e-220 767.7 522 69.9
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 6.7e-220 767.7 540 69.3
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 1.5e-219 766.5 538 68.4
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 1.9e-219 766.1 536 68.8
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 2.5e-219 765.8 521 69.3
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 4.3e-219 765.0 537 68.7
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 1.3e-218 763.5 506 73.5
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 1.6e-218 763.1 537 68.9
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 1.6e-218 763.1 584 65.8
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 2.8e-218 762.3 535 68.0
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 2.8e-218 762.3 601 62.6
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 1.1e-217 760.4 551 67.2
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 5.3e-217 758.1 621 63.3
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 1.2e-216 756.9 538 67.5
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 1.2e-216 756.9 559 67.6
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 1.5e-216 756.5 586 64.2
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 2.6e-216 755.7 586 64.2
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.1e-214 750.4 592 63.5
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 1.6e-213 746.5 597 63.1
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 6.0e-213 744.6 540 67.0
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 1.1e-211 740.3 479 74.7
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 3.0e-204 715.7 540 63.0
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 7.4e-203 711.1 563 62.5
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 3.7e-202 708.8 577 61.9
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 2.6e-200 702.6 529 65.4
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 1.0e-196 690.6 480 70.8
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 2.4e-193 679.5 539 62.3
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 2.6e-192 676.0 537 62.2
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 1.5e-187 660.2 532 62.2
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 2.2e-186 656.4 481 68.8
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 2.2e-183 646.4 829 44.8
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 1.8e-177 626.7 578 57.8
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 1.8e-177 626.7 429 70.4
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 3.2e-174 615.9 428 68.0
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 2.2e-170 603.2 540 54.8
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 3.7e-162 575.9 555 52.4
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 2.4e-161 573.2 534 56.4
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 2.9e-159 566.2 410 68.0
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 3.9e-159 565.8 589 50.9
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 4.6e-152 542.3 435 61.1
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 1.5e-147 527.3 422 59.5
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 9.8e-147 524.6 496 53.8
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 5.4e-145 518.8 359 70.5
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.4e-137 494.2 369 63.1
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 1.2e-120 438.0 384 57.6
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 8.7e-119 431.8 374 55.9
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 2.8e-101 373.6 323 57.0
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 4.1e-100 369.8 284 63.7
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 6.9e-100 369.0 276 66.7
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 4.6e-96 356.3 290 58.6
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 2.6e-91 340.5 597 38.4
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 1.0e-87 328.6 263 62.7
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 1.8e-87 327.8 426 43.7
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 2.6e-78 297.4 233 64.4
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 1.2e-72 278.5 187 69.5
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 1.1e-70 271.9 653 33.1
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-68 264.2 385 39.0
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 1.7e-61 241.5 189 62.4
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 2.8e-61 240.7 544 31.2
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 3.5e-51 207.2 141 73.0
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 1.4e-44 185.3 290 39.0
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 4.3e-41 173.7 274 37.2
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 6.2e-40 169.9 137 63.5
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 2.0e-38 164.9 99 76.8
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 7.0e-36 156.4 213 44.1
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.2e-35 155.6 144 54.9
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 3.5e-35 154.1 111 72.1
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 7.8e-35 152.9 103 69.9
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.3e-34 151.4 221 41.6
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 4.3e-33 147.1 286 37.4
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.6e-32 145.2 218 41.7
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.9e-28 131.7 123 57.7
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 3.7e-21 107.5 80 58.8
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 3.3e-17 94.4 135 40.0
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 1.6e-16 92.0 433 24.0
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 8.1e-16 89.7 421 24.2
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 1.5e-14 85.5 153 39.9
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.4e-14 84.0 64 64.1
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.7e-13 82.0 46 78.3
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.9e-13 80.5 53 66.0
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 6.4e-13 80.1 46 76.1
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 7.1e-12 76.6 46 73.9
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.6e-11 75.5 50 68.0
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 7.8e-11 73.2 68 48.5
Pp3s34_300 Physcomitrium patens HOM05D000549 ORTHO05D006202 3.6e-08 64.3 248 29.0
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 9.9e-06 56.2 39 64.1


User provided reference genes

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