Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1538.1 766 100.0
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1355.9 764 87.0
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1348.2 764 85.7
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1333.9 796 83.7
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1311.2 766 83.3
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1305.0 765 83.8
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1300.4 764 83.0
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1294.3 764 83.0
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1284.6 764 82.7
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1282.7 764 82.3
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1278.1 764 81.5
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1275.0 764 80.9
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1275.0 765 81.7
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1273.8 764 82.9
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1273.5 764 81.2
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1270.4 752 82.8
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1268.4 766 81.3
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1268.1 764 80.6
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1263.8 764 80.5
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1263.1 765 80.9
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1262.7 764 81.2
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1257.3 766 80.7
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1256.5 766 81.2
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1255.7 757 82.2
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1254.2 764 80.1
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1253.4 765 80.3
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1250.3 840 75.4
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1250.0 764 79.7
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1248.8 793 77.9
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1247.6 764 80.6
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1243.8 764 78.7
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1243.8 764 79.2
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1243.4 764 79.5
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1241.9 764 78.7
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1239.9 765 79.1
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1239.9 764 78.4
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1239.6 764 79.2
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1238.8 783 78.3
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1238.4 764 79.2
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1237.2 764 79.1
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1236.5 764 80.1
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1236.1 765 79.3
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1234.9 764 78.9
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1234.9 765 79.5
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1233.8 764 79.2
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1233.4 764 79.3
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1231.5 769 77.6
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1231.1 765 78.6
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1229.9 765 79.0
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1229.9 764 78.4
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1229.2 765 78.8
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1229.2 764 78.4
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1229.2 765 78.6
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1229.2 765 78.3
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1228.8 764 79.3
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1227.6 765 78.6
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1227.6 770 79.1
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1226.8 772 78.1
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1226.5 764 78.5
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1226.1 765 78.7
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1224.5 765 78.4
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1223.8 766 78.2
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1221.8 764 78.3
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1221.1 837 73.2
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1221.1 760 78.9
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1219.9 763 78.5
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1219.5 893 70.1
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1218.8 766 77.7
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1218.0 765 78.6
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1217.6 763 78.2
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1217.6 764 78.0
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1216.1 763 78.2
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1215.3 751 79.6
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1214.9 777 77.3
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1213.4 765 77.9
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1213.4 765 77.9
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1212.6 764 77.5
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1210.3 764 78.0
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1208.7 793 76.4
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1199.9 830 72.7
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1194.1 788 76.3
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1190.3 766 76.9
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1187.9 770 76.6
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1187.6 837 71.4
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1186.8 793 74.3
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1184.1 764 75.9
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1179.1 762 76.5
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1175.2 707 80.2
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1173.7 731 78.0
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1157.1 768 76.3
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1130.5 768 75.4
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1122.5 784 70.2
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1121.3 697 78.9
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1113.6 765 72.0
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1101.7 731 72.9
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1099.3 743 73.2
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1096.6 765 72.9
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1076.6 771 69.0
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 1.4e-310 1069.3 647 80.7
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 4.8e-308 1060.8 674 75.5
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 2.3e-305 1052.0 743 71.2
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 8.8e-302 1040.0 778 65.9
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 2.7e-298 1028.5 765 68.4
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.3e-297 1026.2 772 66.7
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 2.0e-293 1012.3 777 65.4
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 6.2e-271 937.6 580 78.8
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 9.3e-259 897.1 776 62.1
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 1.8e-254 882.9 642 70.7
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 6.9e-238 827.8 542 74.7
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 2.9e-220 769.2 513 74.1
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 2.8e-178 629.8 343 86.9
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.7e-127 461.1 255 86.7
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 8.5e-111 405.6 307 65.1
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 2.7e-109 400.6 285 70.5
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 1.6e-93 348.2 194 86.6
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 4.4e-91 340.1 227 76.2
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 4.1e-89 333.6 263 64.6
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.6e-83 314.3 180 85.6
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 3.7e-74 283.9 345 47.0
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 3.7e-66 257.3 275 53.5
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 8.3e-66 256.1 182 72.0
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.1e-53 214.9 139 76.3
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 6.4e-42 176.8 117 73.5
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 6.8e-36 156.8 94 81.9
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 1.6e-32 145.6 83 83.1
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 3.6e-29 134.4 133 52.6
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 1.4e-28 132.5 100 66.0
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 6.9e-28 130.2 82 79.3
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 9.3e-25 119.8 76 72.4
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.0e-23 116.3 67 77.6
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 6.2e-21 107.1 63 81.0
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 1.5e-19 102.4 67 74.6
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 8.7e-15 86.7 105 51.4
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.9e-09 68.9 42 83.3
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 5.7e-06 57.4 41 68.3


User provided reference genes

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