Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0000570 Simmondsia chinensis HOM05D006937 ORTHO05D008747 2.1e-55 218.8 112 100.0
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 2.8e-47 191.8 109 86.2
Rhsim12G0077900 Rhododendron simsii HOM05D006937 ORTHO05D008747 2.8e-47 191.8 109 86.2
EL10Ac6g13467 Beta vulgaris HOM05D006937 ORTHO05D008747 1.1e-46 189.9 111 84.7
Ciclev10032989m.g Citrus clementina HOM05D006937 ORTHO05D008747 2.4e-46 188.7 109 82.6
MSTRG.2329 Avicennia marina HOM05D006937 ORTHO05D008747 3.1e-46 188.3 111 83.8
TAR629G2875 Trochodendron aralioides HOM05D006937 ORTHO05D008747 4.1e-46 188.0 109 83.5
CiPaw.06G089000 Carya illinoinensis HOM05D006937 ORTHO05D008747 5.3e-46 187.6 109 81.7
CSS0011527 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 6.9e-46 187.2 109 84.4
Cc11_g12540 Coffea canephora HOM05D006937 ORTHO05D008747 6.9e-46 187.2 113 83.2
Atru.chr11.1713 Acer truncatum HOM05D006937 ORTHO05D008747 1.2e-45 186.4 109 83.5
Lj3A1033G46 Lonicera japonica HOM05D006937 ORTHO05D008747 1.2e-45 186.4 109 85.3
DCAR_018308 Daucus carota HOM05D006937 ORTHO05D008747 1.5e-45 186.0 109 83.5
Eucgr.G02475 Eucalyptus grandis HOM05D006937 ORTHO05D008747 1.5e-45 186.0 109 83.5
Gohir.A05G305601 Gossypium hirsutum HOM05D006937 ORTHO05D008747 2.0e-45 185.7 111 79.3
Migut.E00068 Erythranthe guttata HOM05D006937 ORTHO05D008747 5.9e-45 184.1 104 83.7
QL03p069840 Quercus lobata HOM05D006937 ORTHO05D008747 7.6e-45 183.7 109 79.8
SGA_v2.0_scaffold287G47146 Striga asiatica HOM05D006937 ORTHO05D008747 7.6e-45 183.7 111 80.2
Sopen05g007730 Solanum pennellii HOM05D006937 ORTHO05D008747 1.0e-44 183.3 109 80.7
CAN.G964.22 Capsicum annuum HOM05D006937 ORTHO05D008747 1.3e-44 183.0 109 81.7
MELO3C024261.2 Cucumis melo HOM05D006937 ORTHO05D008747 1.3e-44 183.0 110 79.1
Thecc.02G339100 Theobroma cacao HOM05D006937 ORTHO05D008747 1.3e-44 183.0 111 78.4
TWI60G0457 Tripterygium wilfordii HOM05D006937 ORTHO05D008747 1.3e-44 183.0 107 81.3
CsaV3_7G033500 Cucumis sativus L. HOM05D006937 ORTHO05D008747 1.7e-44 182.6 110 79.1
Gorai.009G325600 Gossypium raimondii HOM05D006937 ORTHO05D008747 1.7e-44 182.6 111 77.5
Gohir.D05G305600 Gossypium hirsutum HOM05D006937 ORTHO05D008747 2.2e-44 182.2 111 77.5
Manes.01G032100 Manihot esculenta HOM05D006937 ORTHO05D008747 2.2e-44 182.2 109 78.9
ECA246G2190 Erigeron canadensis HOM05D006937 ORTHO05D008747 2.9e-44 181.8 109 79.8
Sed0007221 Sechium edule HOM05D006937 ORTHO05D008747 3.8e-44 181.4 109 79.8
ATR0730G163 Amborella trichopoda HOM05D006937 ORTHO05D008747 6.5e-44 180.6 109 81.7
Glyma.01G053200 Glycine max HOM05D006937 ORTHO05D008747 6.5e-44 180.6 109 78.9
Glyma.02G111700 Glycine max HOM05D006937 ORTHO05D008747 8.5e-44 180.3 109 79.8
MD16G1066900 Malus domestica HOM05D006937 ORTHO05D008747 8.5e-44 180.3 109 78.9
CAN.G1642.3 Capsicum annuum HOM05D006937 ORTHO05D008747 1.1e-43 179.9 109 78.9
FvH4_4g30700 Fragaria vesca HOM05D006937 ORTHO05D008747 1.1e-43 179.9 111 75.7
MD13G1068100 Malus domestica HOM05D006937 ORTHO05D008747 1.1e-43 179.9 109 78.9
Lalb_Chr10g0098481 Lupinus albus HOM05D006937 ORTHO05D008747 1.4e-43 179.5 109 77.1
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 1.4e-43 179.5 109 80.7
Sed0004013 Sechium edule HOM05D006937 ORTHO05D008747 1.4e-43 179.5 109 78.0
PGSC0003DMG401028340 Solanum tuberosum HOM05D006937 ORTHO05D008747 1.9e-43 179.1 109 78.9
HanXRQChr17g0537301 Helianthus annuus HOM05D006937 ORTHO05D008747 2.5e-43 178.7 107 79.4
RcHm_v2.0_Chr4g0439101 Rosa chinensis HOM05D006937 ORTHO05D008747 2.5e-43 178.7 111 74.8
COL.COLO4_27967 Corchorus olitorius HOM05D006937 ORTHO05D008747 3.2e-43 178.3 111 74.8
FAN17G2174 Fragaria x ananassa HOM05D006937 ORTHO05D008747 4.2e-43 177.9 111 74.8
Lsat_1_v5_gn_3_20221 Lactuca sativa HOM05D006937 ORTHO05D008747 4.2e-43 177.9 107 80.4
CANSAT64G0520 Cannabis sativa HOM05D006937 ORTHO05D008747 5.5e-43 177.6 111 77.5
Eucgr.D01709 Eucalyptus grandis HOM05D006937 ORTHO05D008747 5.5e-43 177.6 109 79.8
FAN07G0310 Fragaria x ananassa HOM05D006937 ORTHO05D008747 7.2e-43 177.2 111 74.8
SGA_v2.0_scaffold114G32026 Striga asiatica HOM05D006937 ORTHO05D008747 7.2e-43 177.2 121 74.4
Prupe.1G280000 Prunus persica HOM05D006937 ORTHO05D008747 1.6e-42 176.0 109 76.1
Nn3g17337 Nelumbo nucifera HOM05D006937 ORTHO05D008747 2.1e-42 175.6 109 78.0
PSO675G6138 Papaver somniferum HOM05D006937 ORTHO05D008747 3.6e-42 174.9 111 76.6
Aqoxy3G03499 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 6.1e-42 174.1 111 73.9
Aqoxy5G02063 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 6.1e-42 174.1 111 73.9
Os07g0595800 Oryza sativa ssp. japonica HOM05D006937 ORTHO05D008747 6.1e-42 174.1 107 77.6
Potri.008G091400 Populus trichocarpa HOM05D006937 ORTHO05D008747 6.1e-42 174.1 109 77.1
arahy.Tifrunner.gnm1.ann1.A48TS2 Arachis hypogaea HOM05D006937 ORTHO05D008747 7.9e-42 173.7 111 75.7
arahy.Tifrunner.gnm1.ann1.TRF8LB Arachis hypogaea HOM05D006937 ORTHO05D008747 1.3e-41 172.9 111 75.7
VMungo1215G2773 Vigna mungo HOM05D006937 ORTHO05D008747 1.3e-41 172.9 108 75.0
Zm00001eb326530 Zea mays HOM05D006937 ORTHO05D008747 1.3e-41 172.9 107 76.6
Lj1g0016193 Lotus japonicus HOM05D006937 ORTHO05D008747 1.8e-41 172.6 109 74.3
Lj6g0000786 Lotus japonicus HOM05D006937 ORTHO05D008747 1.8e-41 172.6 109 75.2
Phvul.001G169600 Phaseolus vulgaris HOM05D006937 ORTHO05D008747 1.8e-41 172.6 111 73.0
GSVIVG01025409001 Vitis vinifera HOM05D006937 ORTHO05D008747 1.8e-41 172.6 109 76.1
Nitab4.5_0008978g0010 Nicotiana tabacum HOM05D006937 ORTHO05D008747 1.1e-40 169.9 123 74.0
Hund25447 Selenicereus undatus HOM05D006937 ORTHO05D008747 1.5e-40 169.5 111 77.5
Medtr5g042620 Medicago truncatula HOM05D006937 ORTHO05D008747 3.3e-40 168.3 109 69.7
Ca_04880_v3 Cicer arietinum L. HOM05D006937 ORTHO05D008747 5.7e-40 167.5 109 70.6
Psat2g127680 Pisum sativum HOM05D006937 ORTHO05D008747 9.7e-40 166.8 109 70.6
arahy.Tifrunner.gnm1.ann1.8BL9U8 Arachis hypogaea HOM05D006937 ORTHO05D008747 1.7e-39 166.0 111 73.9
AUR62024142 Chenopodium quinoa HOM05D006937 ORTHO05D008747 4.8e-39 164.5 111 77.5
Haze_11954 Corylus avellana HOM05D006937 ORTHO05D008747 8.2e-39 163.7 120 70.8
CDE11G0882 Ceratophyllum demersum HOM05D006937 ORTHO05D008747 1.8e-38 162.5 137 62.0
TPR.G19944 Trifolium pratense HOM05D006937 ORTHO05D008747 1.8e-38 162.5 109 66.1
unitig_744.g24284 Utricularia gibba HOM05D006937 ORTHO05D008747 1.8e-38 162.5 121 68.6
Nitab4.5_0000391g0170 Nicotiana tabacum HOM05D006937 ORTHO05D008747 6.9e-38 160.6 109 77.1
SEGI_41088 Sequoiadendron giganteum HOM05D006937 ORTHO05D008747 1.5e-37 159.5 103 72.8
Peaxi162Scf00222g00024 Petunia axillaris HOM05D006937 ORTHO05D008747 1.3e-36 156.4 109 72.5
PGR142G2813 Punica granatum HOM05D006937 ORTHO05D008747 1.3e-36 156.4 109 67.0
AUR62005588 Chenopodium quinoa HOM05D006937 ORTHO05D008747 2.2e-36 155.6 108 75.0
PGR119G1353 Punica granatum HOM05D006937 ORTHO05D008747 1.9e-35 152.5 114 65.8
PSO541G5056 Papaver somniferum HOM05D006937 ORTHO05D008747 2.5e-35 152.1 111 69.4
Duzib268G1027 Durio zibethinus HOM05D006937 ORTHO05D008747 4.7e-34 147.9 111 64.9
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 2.3e-33 145.6 107 67.3
Aa31LG7G8430 Aethionema arabicum HOM05D006937 ORTHO05D008747 1.5e-32 142.9 111 61.3
Thhalv10008997m.g Eutrema salsugineum HOM05D006937 ORTHO05D008747 1.5e-32 142.9 111 60.4
Sabra08G0068400 Salix brachista HOM05D006937 ORTHO05D008747 1.5e-32 142.9 109 65.1
Aqoxy5G02982 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 2.0e-32 142.5 111 64.0
Actinidia31958 Actinidia chinensis HOM05D003669 ORTHO05D005046 2.6e-32 142.1 117 65.0
THA.LOC104808654 Tarenaya hassleriana HOM05D006937 ORTHO05D008747 3.3e-32 141.7 111 61.3
Sp6g00050 Schrenkiella parvula HOM05D006937 ORTHO05D008747 4.4e-32 141.4 111 60.4
AL1G39070 Arabidopsis lyrata HOM05D006937 ORTHO05D008747 9.7e-32 140.2 111 59.5
AT1G26660 Arabidopsis thaliana HOM05D006937 ORTHO05D008747 1.3e-31 139.8 111 61.3
BcaC06g35132 Brassica carinata HOM05D006937 ORTHO05D008747 1.3e-31 139.8 111 61.3
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.3e-31 139.8 111 61.3
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 1.3e-31 139.8 111 61.3
Carub.0001s2437 Capsella rubella HOM05D006937 ORTHO05D008747 1.3e-31 139.8 109 61.5
SalBow8G3842 Salvia bowleyana HOM05D006937 ORTHO05D008747 1.3e-31 139.8 139 54.7
BcaB03g14081 Brassica carinata HOM05D006937 ORTHO05D008747 3.7e-31 138.3 111 60.4
AagrBONN_evm.TU.Sc2ySwM_228.447 Anthoceros agrestis HOM05D006937 ORTHO05D008747 1.4e-30 136.3 100 63.0
BcaB05g21932 Brassica carinata HOM05D006937 ORTHO05D008747 1.8e-30 136.0 111 58.6
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 3.1e-30 135.2 111 59.5
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 3.1e-30 135.2 111 59.5
SHI35111 Sapria himalayana HOM05D006937 ORTHO05D008747 4.1e-30 134.8 109 63.3
Mapoly0006s0094 Marchantia polymorpha HOM05D006937 ORTHO05D008747 2.2e-28 129.0 105 60.0
PSO357G0488 Papaver somniferum HOM05D006937 ORTHO05D008747 1.4e-27 126.3 81 74.1
Pp3c21_19110 Physcomitrium patens HOM05D006937 ORTHO05D008747 1.9e-27 125.9 104 57.7
FAN12G3635 Fragaria x ananassa HOM05D006937 ORTHO05D008747 4.2e-27 124.8 91 68.1
CBR_g48697 Chara braunii HOM05D006937 ORTHO05D008747 5.2e-25 117.9 105 52.4
arahy.Tifrunner.gnm1.ann1.J4SELD Arachis hypogaea HOM05D006937 ORTHO05D008747 4.4e-24 114.8 70 75.7
arahy.Tifrunner.gnm1.ann1.K4YSPN Arachis hypogaea HOM05D006937 ORTHO05D008747 6.3e-23 110.9 66 78.8
Ah.02g130690 Amaranthus hybridus HOM05D006937 ORTHO05D008747 4.2e-19 98.2 111 52.3
CSS0016362 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 1.4e-17 93.2 109 52.3
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 2.8e-15 85.5 75 53.3
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 1.6e-13 79.7 48 77.1
Sabra10G0124400 Salix brachista HOM05D006937 ORTHO05D008747 1.3e-12 76.6 109 45.0
Potri.010G163600 Populus trichocarpa HOM05D006937 ORTHO05D008747 2.9e-12 75.5 56 71.4
ClCG09G001850 Citrullus lanatus HOM05D006937 ORTHO05D008747 8.8e-09 63.9 34 79.4
Cc00_g19610 Coffea canephora HOM05D000421 ORTHO05D013979 1.7e-07 59.7 34 85.3
Cc08_g04320 Coffea canephora HOM05D006937 ORTHO05D013979 1.7e-07 59.7 34 85.3


User provided reference genes

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