Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 5.3e-122 441.0 224 100.0
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 4.6e-73 278.5 225 72.0
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 6.0e-73 278.1 227 68.3
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 7.8e-73 277.7 225 69.8
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 1.0e-72 277.3 225 70.7
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.7e-72 276.6 226 69.9
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 6.6e-72 274.6 226 68.6
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 3.3e-71 272.3 227 68.7
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 3.3e-71 272.3 227 69.2
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 7.3e-71 271.2 226 66.4
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 1.6e-70 270.0 226 69.0
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 1.6e-70 270.0 227 68.7
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 4.7e-70 268.5 229 68.6
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 6.2e-70 268.1 229 68.1
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 8.1e-70 267.7 224 67.4
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 1.4e-69 266.9 225 68.4
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 2.3e-69 266.2 226 67.3
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 2.3e-69 266.2 225 68.9
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 3.1e-69 265.8 228 67.1
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 3.1e-69 265.8 228 67.1
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 5.2e-69 265.0 227 65.6
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 6.8e-69 264.6 225 67.1
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 1.2e-68 263.8 226 69.0
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 1.2e-68 263.8 225 68.0
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 2.0e-68 263.1 225 66.2
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 2.2e-67 259.6 226 66.8
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 4.9e-67 258.5 224 67.0
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 6.4e-67 258.1 239 62.8
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 8.3e-67 257.7 225 64.9
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 1.1e-66 257.3 224 65.6
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 1.1e-66 257.3 232 62.5
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 7.1e-66 254.6 233 65.2
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 1.2e-65 253.8 226 65.9
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 1.2e-65 253.8 226 65.9
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 1.2e-65 253.8 168 78.6
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 1.2e-65 253.8 171 78.9
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 2.1e-65 253.1 224 63.8
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 2.1e-65 253.1 224 63.8
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 2.1e-65 253.1 225 63.1
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.0e-64 250.8 224 64.7
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 1.0e-64 250.8 275 56.4
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 1.3e-64 250.4 228 63.2
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 2.3e-64 249.6 223 63.7
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 2.3e-64 249.6 223 64.6
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 3.0e-64 249.2 186 73.7
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 6.6e-64 248.1 168 78.0
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 8.6e-64 247.7 193 69.4
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.1e-63 247.3 224 63.4
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 1.5e-63 246.9 191 71.7
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 1.9e-63 246.5 193 70.5
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.9e-63 246.5 225 64.4
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 3.3e-63 245.7 193 69.9
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 7.3e-63 244.6 225 62.7
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 7.3e-63 244.6 228 61.0
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 9.5e-63 244.2 224 62.5
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 1.2e-62 243.8 164 79.9
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 6.2e-62 241.5 227 59.0
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 1.4e-61 240.4 266 57.1
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 2.3e-61 239.6 166 77.7
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 3.1e-61 239.2 246 58.9
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 6.8e-61 238.0 247 59.1
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 1.5e-60 236.9 228 59.6
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 7.6e-60 234.6 160 78.1
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 7.6e-60 234.6 251 56.2
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 9.9e-60 234.2 227 60.4
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 1.7e-59 233.4 172 73.3
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 2.9e-59 232.6 176 73.3
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 2.9e-59 232.6 174 72.4
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 2.9e-59 232.6 174 72.4
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 2.9e-59 232.6 244 58.6
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 4.9e-59 231.9 227 57.7
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 6.4e-59 231.5 251 57.8
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 6.4e-59 231.5 224 59.8
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 8.4e-59 231.1 163 75.5
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 1.1e-58 230.7 172 72.1
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 1.9e-58 229.9 209 63.2
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 2.1e-57 226.5 194 64.9
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 2.7e-57 226.1 130 86.2
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 3.5e-57 225.7 237 57.8
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 7.8e-57 224.6 224 59.4
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 7.8e-57 224.6 192 64.6
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 7.8e-57 224.6 179 69.3
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 7.8e-57 224.6 201 65.2
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 1.0e-56 224.2 225 60.9
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 1.0e-56 224.2 158 73.4
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 1.3e-56 223.8 224 59.4
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 1.3e-56 223.8 224 59.4
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 1.3e-56 223.8 224 59.4
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 1.3e-56 223.8 224 59.4
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 1.3e-56 223.8 194 63.9
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.3e-56 223.8 228 57.5
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 3.9e-56 222.2 135 80.7
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 3.9e-56 222.2 188 67.0
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 3.9e-56 222.2 146 80.1
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 5.1e-56 221.9 191 63.4
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 5.1e-56 221.9 300 47.7
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 6.6e-56 221.5 154 74.0
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 8.6e-56 221.1 158 74.1
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 1.9e-55 219.9 206 63.1
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 5.6e-55 218.4 157 72.6
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 1.2e-54 217.2 229 59.4
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 1.6e-54 216.9 206 60.7
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 3.6e-54 215.7 155 71.6
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 3.6e-54 215.7 200 66.5
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 4.7e-54 215.3 196 63.8
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 1.1e-53 214.2 206 59.2
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 1.8e-53 213.4 169 68.6
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 2.4e-53 213.0 120 88.3
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 5.2e-53 211.8 159 70.4
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 1.2e-52 210.7 210 60.5
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 2.9e-51 206.1 225 56.0
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 4.9e-51 205.3 154 70.1
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 6.4e-51 204.9 177 63.8
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 2.1e-49 199.9 181 60.8
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 7.8e-49 198.0 190 57.4
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 1.0e-48 197.6 188 61.2
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 2.3e-48 196.4 205 57.1
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 5.1e-48 195.3 192 58.9
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 6.6e-48 194.9 159 66.7
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 1.9e-47 193.4 178 64.0
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.9e-47 193.4 187 56.7
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 1.8e-45 186.8 128 72.7
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 2.4e-45 186.4 140 71.4
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 4.0e-45 185.7 173 59.5
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 3.4e-44 182.6 181 58.6
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.7e-43 180.3 179 58.1
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 2.2e-43 179.9 202 55.4
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 1.2e-41 174.1 125 73.6
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 1.2e-41 174.1 133 66.2
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.6e-41 173.7 153 62.1
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 1.6e-41 173.7 118 74.6
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 5.1e-40 168.7 137 65.0
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 1.5e-39 167.2 162 57.4
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 5.6e-39 165.2 182 55.5
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 7.4e-39 164.9 153 59.5
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 9.6e-39 164.5 136 59.6
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 3.6e-38 162.5 202 49.5
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 6.2e-38 161.8 113 75.2
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 1.4e-37 160.6 154 57.8
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 3.1e-37 159.5 226 46.0
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 6.9e-37 158.3 177 56.5
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 9.0e-37 157.9 144 63.9
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 1.7e-35 153.7 155 58.7
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 1.1e-26 124.4 156 46.8
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 1.9e-26 123.6 152 45.4
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 3.1e-21 106.3 62 88.7
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 3.2e-18 96.3 92 64.1
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 4.6e-17 92.4 88 55.7
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 7.9e-17 91.7 145 40.7
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 1.8e-16 90.5 116 40.5
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 5.0e-11 72.4 51 68.6
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 3.9e-08 62.8 35 91.4
Cpa.g.sc43.61 Carica papaya HOM05D002231 ORTHO05D006103 6.7e-08 62.0 105 41.0
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 1.1e-07 61.2 39 71.8


User provided reference genes

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