Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 3.1e-262 907.9 450 100.0
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 2.2e-220 768.8 451 84.5
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 8.5e-220 766.9 448 84.6
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 1.9e-219 765.8 448 84.8
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 5.2e-217 757.7 451 84.0
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 2.6e-216 755.4 451 83.1
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 3.1e-214 748.4 452 83.4
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 4.1e-214 748.0 447 83.0
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 3.5e-213 745.0 451 80.9
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 3.5e-213 745.0 445 83.4
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 5.9e-213 744.2 449 81.3
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 1.0e-212 743.4 451 81.4
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 1.3e-212 743.0 451 81.4
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 1.1e-211 740.0 451 80.9
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 1.1e-211 740.0 448 81.5
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 1.5e-211 739.6 451 80.9
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 1.5e-211 739.6 451 81.4
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 3.2e-211 738.4 449 82.4
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 4.2e-211 738.0 449 82.0
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 7.2e-211 737.3 447 81.0
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 1.6e-210 736.1 451 80.3
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 4.7e-210 734.6 450 80.4
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 1.0e-209 733.4 453 81.2
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.8e-209 732.6 456 81.4
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 5.2e-209 731.1 447 79.9
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 8.8e-209 730.3 449 80.6
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 8.8e-209 730.3 451 79.6
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 2.0e-208 729.2 473 76.5
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 5.7e-208 727.6 417 86.1
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 6.3e-207 724.2 451 79.8
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 6.3e-207 724.2 452 79.2
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 1.4e-206 723.0 460 77.8
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 2.4e-206 722.2 453 78.4
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 2.4e-206 722.2 484 75.4
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 4.1e-206 721.5 432 81.5
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 5.3e-206 721.1 453 77.7
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 5.3e-206 721.1 478 77.8
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.6e-205 719.5 441 80.5
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 3.5e-205 718.4 449 80.4
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 3.5e-205 718.4 449 79.5
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 3.5e-205 718.4 453 78.1
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.3e-204 716.5 442 80.3
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 2.9e-204 715.3 452 77.4
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 6.5e-204 714.1 442 80.1
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 4.2e-203 711.4 451 78.9
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 7.2e-203 710.7 457 76.8
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 7.2e-203 710.7 440 79.8
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 1.2e-202 709.9 450 77.3
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 4.7e-202 708.0 451 77.2
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 8.0e-202 707.2 453 75.3
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 1.8e-201 706.1 456 77.2
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 3.0e-201 705.3 447 79.0
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 3.0e-201 705.3 453 74.8
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 3.0e-201 705.3 447 77.2
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 4.0e-201 704.9 457 76.6
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 1.2e-200 703.4 453 75.1
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 4.4e-200 701.4 456 76.5
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 9.8e-200 700.3 472 72.5
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 1.7e-199 699.5 456 76.8
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 1.7e-199 699.5 457 75.1
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 3.7e-199 698.4 464 73.7
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 3.7e-199 698.4 453 74.6
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 6.3e-199 697.6 443 77.4
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 6.3e-199 697.6 431 77.5
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 8.3e-199 697.2 451 74.5
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 8.3e-199 697.2 430 80.2
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 3.1e-198 695.3 447 76.1
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 4.1e-198 694.9 470 73.4
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 9.1e-198 693.7 451 78.3
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 1.2e-197 693.3 453 74.6
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.2e-197 693.3 452 74.8
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 1.6e-197 693.0 453 73.7
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 2.7e-197 692.2 453 74.0
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 7.7e-197 690.6 460 74.8
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 2.9e-196 688.7 460 74.3
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 5.0e-196 688.0 450 74.0
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 4.2e-195 684.9 473 70.8
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 1.2e-194 683.3 458 74.5
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 2.1e-194 682.6 451 75.2
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 3.6e-194 681.8 453 73.3
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 6.1e-194 681.0 482 69.3
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 1.0e-193 680.2 444 75.5
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.0e-193 680.2 447 74.7
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 5.2e-193 677.9 451 74.9
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 8.9e-193 677.2 449 75.3
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 9.8e-192 673.7 461 73.5
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 4.1e-190 668.3 497 71.4
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 2.7e-189 665.6 485 72.0
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 4.5e-189 664.8 460 71.5
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 3.8e-188 661.8 456 73.2
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 3.0e-185 652.1 432 71.5
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 7.5e-184 647.5 447 73.2
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 8.3e-183 644.0 408 78.4
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 1.1e-182 643.7 485 67.0
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 4.1e-182 641.7 407 79.9
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 8.0e-178 627.5 413 73.6
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 1.4e-177 626.7 384 77.9
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 1.6e-173 613.2 410 74.6
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 2.1e-173 612.8 466 68.2
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 8.6e-172 607.4 451 69.0
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 1.2e-170 603.6 371 81.7
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 3.6e-170 602.1 458 66.4
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 8.1e-170 600.9 450 68.2
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 2.1e-162 576.2 436 64.2
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 2.4e-158 562.8 453 60.7
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 7.8e-157 557.8 430 62.3
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 6.6e-156 554.7 425 62.8
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 3.1e-153 545.8 322 82.3
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 1.2e-152 543.9 429 61.1
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 2.4e-137 493.0 455 60.0
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 6.7e-132 474.9 277 80.1
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 1.3e-119 434.1 447 56.4
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 4.8e-114 415.6 437 46.9
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 4.2e-110 402.5 439 49.0
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 2.2e-98 363.6 315 61.3
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 4.8e-98 362.5 369 56.1
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 2.8e-90 336.7 181 87.3
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 5.5e-86 322.4 497 37.6
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 2.9e-58 230.3 335 43.3
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 4.9e-58 229.6 189 68.8
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 1.5e-54 218.0 108 90.7
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 6.2e-53 212.6 380 39.7
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 8.9e-44 182.2 393 35.9
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 2.6e-43 180.6 124 76.6
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 6.4e-42 176.0 123 75.6
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 3.3e-38 163.7 137 62.8
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 1.3e-31 141.7 84 72.6
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 6.6e-31 139.4 101 69.3
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 2.0e-27 127.9 125 53.6
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 3.0e-23 114.0 83 66.3
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 3.3e-22 110.5 67 70.1
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 4.3e-22 110.2 75 69.3
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 6.9e-20 102.8 215 29.3
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 3.4e-19 100.5 106 57.5
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 1.0e-18 99.0 67 68.7
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 6.5e-18 96.3 102 54.9
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 7.1e-17 92.8 61 75.4
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 1.6e-13 81.6 56 75.0


User provided reference genes

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