Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0000250 Simmondsia chinensis HOM05D006885 ORTHO05D008606 4.2e-59 231.1 112 100.0
Glyma.18G300000 Glycine max HOM05D006885 ORTHO05D008606 1.4e-17 93.2 44 97.7
Eucgr.B03538 Eucalyptus grandis HOM05D006885 ORTHO05D008606 3.0e-17 92.0 44 97.7
Glyma.08G361800 Glycine max HOM05D006885 ORTHO05D008606 6.7e-17 90.9 44 95.5
Atru.chr11.2397 Acer truncatum HOM05D006885 ORTHO05D008606 1.2e-16 90.1 42 100.0
Actinidia19564 Actinidia chinensis HOM05D006885 ORTHO05D008606 1.2e-16 90.1 42 100.0
Phvul.008G000900 Phaseolus vulgaris HOM05D006885 ORTHO05D008606 1.2e-16 90.1 58 74.1
QL03p050754 Quercus lobata HOM05D006885 ORTHO05D008606 1.5e-16 89.7 45 93.3
Aqoxy5G03235 Aquilegia oxysepala HOM05D006885 ORTHO05D008606 2.6e-16 89.0 42 97.6
Ca_06520_v3 Cicer arietinum L. HOM05D006885 ORTHO05D008606 2.6e-16 89.0 42 97.6
Ciclev10033198m.g Citrus clementina HOM05D006885 ORTHO05D008606 2.6e-16 89.0 42 97.6
Haze_11752 Corylus avellana HOM05D006885 ORTHO05D008606 2.6e-16 89.0 42 97.6
Dinv33305 Davidia involucrata HOM05D006885 ORTHO05D008606 2.6e-16 89.0 42 97.6
LjContig00312_ERROPOS870357g0004846 Lotus japonicus HOM05D006885 ORTHO05D008606 2.6e-16 89.0 42 97.6
Potri.001G325000 Populus trichocarpa HOM05D006885 ORTHO05D008606 2.6e-16 89.0 42 97.6
RcHm_v2.0_Chr4g0429451 Rosa chinensis HOM05D006885 ORTHO05D008606 2.6e-16 89.0 42 97.6
Sabra16G0207500 Salix brachista HOM05D006885 ORTHO05D008606 2.6e-16 89.0 42 97.6
Manes.11G080000 Manihot esculenta HOM05D006885 ORTHO05D008606 3.3e-16 88.6 42 95.2
TPR.G15605 Trifolium pratense HOM05D006885 ORTHO05D008606 3.3e-16 88.6 42 95.2
Cfa008736 Carpinus fangiana HOM05D000120 ORTHO05D000068 4.4e-16 88.2 42 97.6
CiPaw.05G104600 Carya illinoinensis HOM05D006885 ORTHO05D008606 4.4e-16 88.2 42 97.6
MSTRG.471 Avicennia marina HOM05D006885 ORTHO05D008606 5.7e-16 87.8 42 97.6
CiPaw.06G106900 Carya illinoinensis HOM05D006885 ORTHO05D008606 5.7e-16 87.8 42 95.2
ClCG06G001860 Citrullus lanatus HOM05D006885 ORTHO05D008606 5.7e-16 87.8 42 95.2
Dinv09126 Davidia involucrata HOM05D006885 ORTHO05D008606 5.7e-16 87.8 42 97.6
FvH4_4g23120 Fragaria vesca HOM05D006885 ORTHO05D008606 5.7e-16 87.8 42 95.2
FAN07G1762 Fragaria x ananassa HOM05D006885 ORTHO05D008606 5.7e-16 87.8 42 95.2
FAN12G2334 Fragaria x ananassa HOM05D006885 ORTHO05D008606 5.7e-16 87.8 42 95.2
FAN17G2783 Fragaria x ananassa HOM05D006885 ORTHO05D008606 5.7e-16 87.8 42 95.2
Hma1.2p1_0459F.1_g157320 Hydrangea macrophylla HOM05D006885 ORTHO05D008606 5.7e-16 87.8 42 95.2
MD13G1125100 Malus domestica HOM05D006885 ORTHO05D008606 5.7e-16 87.8 42 95.2
MD16G1125900 Malus domestica HOM05D006885 ORTHO05D008606 5.7e-16 87.8 42 95.2
Manes.04G090052 Manihot esculenta HOM05D006885 ORTHO05D008606 5.7e-16 87.8 42 95.2
Oeu011334.1 Olea europaea HOM05D006885 ORTHO05D008606 5.7e-16 87.8 42 97.6
Oeu044483.1 Olea europaea HOM05D006885 ORTHO05D008606 5.7e-16 87.8 42 97.6
Peaxi162Scf00962g00024 Petunia axillaris HOM05D006885 ORTHO05D008606 5.7e-16 87.8 42 97.6
Prupe.1G220300 Prunus persica HOM05D006885 ORTHO05D008606 5.7e-16 87.8 42 95.2
Duzib052G0936 Durio zibethinus HOM05D006885 ORTHO05D008606 7.5e-16 87.4 42 97.6
ECA232G0525 Erigeron canadensis HOM05D006885 ORTHO05D008606 7.5e-16 87.4 42 92.9
Gohir.A04G101300 Gossypium hirsutum HOM05D006885 ORTHO05D008606 7.5e-16 87.4 42 97.6
Gohir.D04G140400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 7.5e-16 87.4 42 97.6
Gorai.012G125400 Gossypium raimondii HOM05D006885 ORTHO05D008606 7.5e-16 87.4 42 97.6
Lsat_1_v5_gn_4_1780 Lactuca sativa HOM05D006885 ORTHO05D008606 7.5e-16 87.4 42 92.9
TWI75G1759 Tripterygium wilfordii HOM05D006885 ORTHO05D008606 7.5e-16 87.4 42 95.2
CANSAT01G1896 Cannabis sativa HOM05D006885 ORTHO05D008606 9.7e-16 87.0 42 95.2
Lj6A834T26 Lonicera japonica HOM05D006885 ORTHO05D008606 9.7e-16 87.0 44 88.6
TAR629G2182 Trochodendron aralioides HOM05D006885 ORTHO05D008606 9.7e-16 87.0 42 95.2
BcaC01g06952 Brassica carinata HOM05D006885 ORTHO05D008606 1.3e-15 86.7 71 64.8
CSS0038255 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 1.3e-15 86.7 41 97.6
Nitab4.5_0000913g0010 Nicotiana tabacum HOM05D006885 ORTHO05D008606 1.3e-15 86.7 42 95.2
Ah.03g135790 Amaranthus hybridus HOM05D006885 ORTHO05D008606 1.7e-15 86.3 45 88.9
Dinv25633 Davidia involucrata HOM05D006885 ORTHO05D008606 1.7e-15 86.3 42 92.9
Duzib248G1150 Durio zibethinus HOM05D006885 ORTHO05D008606 1.7e-15 86.3 42 95.2
HanXRQChr03g0067371 Helianthus annuus HOM05D006885 ORTHO05D008606 1.7e-15 86.3 47 83.0
Hund25491 Selenicereus undatus HOM05D006885 ORTHO05D008606 1.7e-15 86.3 42 95.2
Migut.K00992 Erythranthe guttata HOM05D006885 ORTHO05D008606 2.2e-15 85.9 42 95.2
PGR119G0226 Punica granatum HOM05D006885 ORTHO05D008606 2.2e-15 85.9 44 88.6
AUR62005687 Chenopodium quinoa HOM05D006885 ORTHO05D008606 2.8e-15 85.5 42 92.9
AUR62028871 Chenopodium quinoa HOM05D006885 ORTHO05D008606 2.8e-15 85.5 42 92.9
Cc11_g17420 Coffea canephora HOM05D006885 ORTHO05D008606 2.8e-15 85.5 42 92.9
Sp1g23670 Schrenkiella parvula HOM05D006885 ORTHO05D008606 2.8e-15 85.5 42 95.2
Aa31LG7G9990 Aethionema arabicum HOM05D006885 ORTHO05D008606 3.7e-15 85.1 42 92.9
BcaB03g13983 Brassica carinata HOM05D006885 ORTHO05D008606 3.7e-15 85.1 42 92.9
BcaC01g01613 Brassica carinata HOM05D006885 ORTHO05D008606 3.7e-15 85.1 42 92.9
BcaC06g35293 Brassica carinata HOM05D006885 ORTHO05D008606 3.7e-15 85.1 42 92.9
A07p11750 Brassica napus HOM05D006885 ORTHO05D008606 3.7e-15 85.1 42 92.9
A08p26290 Brassica napus HOM05D006885 ORTHO05D008606 3.7e-15 85.1 42 92.9
C03p73770 Brassica napus HOM05D006885 ORTHO05D008606 3.7e-15 85.1 42 92.9
C07p17740 Brassica napus HOM05D006885 ORTHO05D008606 3.7e-15 85.1 42 92.9
BolC3t19669H Brassica oleracea HOM05D006885 ORTHO05D008606 3.7e-15 85.1 42 92.9
BolC7t42280H Brassica oleracea HOM05D006885 ORTHO05D008606 3.7e-15 85.1 42 92.9
BraA07t28960Z Brassica rapa HOM05D006885 ORTHO05D008606 3.7e-15 85.1 42 92.9
BraA08t34580Z Brassica rapa HOM05D006885 ORTHO05D008606 3.7e-15 85.1 42 92.9
MELO3C035240.2 Cucumis melo HOM05D006885 ORTHO05D008606 3.7e-15 85.1 42 92.9
CsaV3_6G007910 Cucumis sativus L. HOM05D006885 ORTHO05D008606 3.7e-15 85.1 42 92.9
Thecc.02G198000 Theobroma cacao HOM05D006885 ORTHO05D008606 3.7e-15 85.1 42 95.2
Nn2g15930 Nelumbo nucifera HOM05D006885 ORTHO05D008606 4.8e-15 84.7 42 92.9
Sed0025765 Sechium edule HOM05D006885 ORTHO05D008606 4.8e-15 84.7 42 88.1
PGSC0003DMG400011888 Solanum tuberosum HOM05D006885 ORTHO05D008606 8.2e-15 84.0 42 95.2
THA.LOC104825479 Tarenaya hassleriana HOM05D006885 ORTHO05D008606 8.2e-15 84.0 42 92.9
CARHR027030 Cardamine hirsuta HOM05D006885 ORTHO05D008606 1.4e-14 83.2 42 90.5
DCAR_024641 Daucus carota HOM05D006885 ORTHO05D008606 1.4e-14 83.2 42 88.1
Medtr3g074700 Medicago truncatula HOM05D006885 ORTHO05D008606 1.8e-14 82.8 42 88.1
Sopen01g005380 Solanum pennellii HOM05D006885 ORTHO05D008606 1.8e-14 82.8 42 92.9
Carub.0001s2598 Capsella rubella HOM05D006885 ORTHO05D008606 2.4e-14 82.4 42 90.5
Thhalv10009236m.g Eutrema salsugineum HOM05D006885 ORTHO05D008606 2.4e-14 82.4 42 90.5
SGA_v2.0_scaffold9G04792 Striga asiatica HOM05D006885 ORTHO05D008606 2.4e-14 82.4 42 88.1
AL1G40850 Arabidopsis lyrata HOM05D006885 ORTHO05D008606 4.1e-14 81.6 42 88.1
AT1G27435 Arabidopsis thaliana HOM05D006885 ORTHO05D008606 4.1e-14 81.6 42 88.1
CAN.G1264.4 Capsicum annuum HOM05D006885 ORTHO05D008606 4.1e-14 81.6 42 92.9
PSO017G7113 Papaver somniferum HOM05D006885 ORTHO05D008606 4.1e-14 81.6 42 88.1
Psat0s1880g0200 Pisum sativum HOM05D006885 ORTHO05D008606 4.1e-14 81.6 42 88.1
unitig_26.g10421 Utricularia gibba HOM05D006885 ORTHO05D008606 1.6e-13 79.7 42 90.5
Lalb_Chr10g0091171 Lupinus albus HOM05D006885 ORTHO05D008606 2.0e-13 79.3 42 88.1
Gorai.001G210600 Gossypium raimondii HOM05D006885 ORTHO05D008606 5.9e-13 77.8 42 88.1
SalBow2G1383 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.3e-12 76.6 42 85.7
Gohir.D07G189020 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.7e-12 76.3 42 85.7
CSS0039361 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 5.0e-12 74.7 36 97.2
GSVIVG01000942001 Vitis vinifera HOM05D006885 ORTHO05D008606 5.0e-12 74.7 36 97.2
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.1e-11 73.6 40 85.0
HPP92_021628 Vanilla planifolia HOM05D006885 ORTHO05D008606 1.9e-11 72.8 42 76.2
HPP92_021686 Vanilla planifolia HOM05D006885 ORTHO05D008606 1.9e-11 72.8 42 76.2
EL10Ac6g13573 Beta vulgaris HOM05D006885 ORTHO05D008606 2.5e-11 72.4 36 94.4
SHI04153 Sapria himalayana HOM05D006885 ORTHO05D008606 9.4e-11 70.5 42 81.0
ATR0582G111 Amborella trichopoda HOM05D006885 ORTHO05D008606 1.2e-10 70.1 45 82.2
Zm00001eb133070 Zea mays HOM05D006885 ORTHO05D008606 1.6e-10 69.7 42 71.4
Zm00001eb408880 Zea mays HOM05D006885 ORTHO05D008606 1.6e-10 69.7 42 71.4
CDE05G1244 Ceratophyllum demersum HOM05D006885 ORTHO05D008606 8.0e-10 67.4 45 75.6
Gohir.A06G101502 Gossypium hirsutum HOM05D006885 ORTHO05D008606 3.0e-09 65.5 42 71.4
Gohir.D02G113400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 7.5e-08 60.8 30 90.0
Gorai.005G128300 Gossypium raimondii HOM05D006885 ORTHO05D008606 7.5e-08 60.8 30 90.0
TPR.G7690 Trifolium pratense HOM05D006885 ORTHO05D008606 2.8e-07 58.9 26 96.2
MBI12_g28748_MAGBIO Magnolia biondii HOM05D006885 ORTHO05D008606 1.1e-06 57.0 28 92.9


User provided reference genes

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