Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 2.3e-104 382.5 227 100.0
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.4e-48 197.2 223 50.7
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 1.4e-48 197.2 223 51.1
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 3.9e-48 195.7 226 51.3
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 3.3e-47 192.6 223 49.8
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 9.7e-47 191.0 228 50.4
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.7e-46 190.3 223 54.7
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.7e-46 190.3 223 49.8
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 6.3e-46 188.3 240 60.8
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 3.1e-45 186.0 223 54.7
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 4.1e-45 185.7 240 54.2
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 5.3e-45 185.3 241 56.8
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 7.0e-45 184.9 223 55.6
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 1.5e-44 183.7 227 51.1
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 2.0e-44 183.3 223 47.1
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 5.9e-44 181.8 223 50.7
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 5.9e-44 181.8 223 54.7
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 7.7e-44 181.4 222 48.2
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.0e-43 181.0 231 54.1
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.3e-43 180.6 225 47.6
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 2.9e-43 179.5 223 59.2
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 3.8e-43 179.1 240 47.5
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 3.8e-43 179.1 223 54.3
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 5.0e-43 178.7 226 50.4
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 1.9e-42 176.8 224 55.8
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 1.9e-42 176.8 224 55.8
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 3.2e-42 176.0 226 46.0
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 5.5e-42 175.3 229 53.3
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 5.5e-42 175.3 223 52.5
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 1.6e-41 173.7 226 45.1
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.7e-41 172.9 235 48.9
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 3.6e-41 172.6 224 47.3
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 6.1e-41 171.8 236 49.6
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 8.0e-41 171.4 236 44.5
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 1.4e-40 170.6 229 47.2
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.4e-40 170.6 224 47.8
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 1.8e-40 170.2 227 52.0
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 2.3e-40 169.9 224 60.3
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 2.3e-40 169.9 237 52.7
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 3.0e-40 169.5 225 50.2
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 1.5e-39 167.2 233 49.8
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 1.5e-39 167.2 224 46.4
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 2.0e-39 166.8 223 45.3
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 2.0e-39 166.8 234 51.7
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 2.6e-39 166.4 239 49.0
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 2.6e-39 166.4 239 49.0
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.6e-39 166.4 223 49.8
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 2.6e-39 166.4 224 49.6
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 3.3e-39 166.0 234 42.3
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 5.7e-39 165.2 238 52.1
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 6.3e-38 161.8 234 50.4
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.1e-37 161.0 223 44.8
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.1e-37 161.0 228 49.6
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.4e-37 160.6 223 44.4
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 1.4e-37 160.6 241 46.9
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 2.4e-37 159.8 221 57.5
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 4.1e-37 159.1 223 43.0
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 7.0e-37 158.3 226 43.8
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 9.1e-37 157.9 219 58.0
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 9.1e-37 157.9 220 51.8
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 1.2e-36 157.5 223 52.5
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.2e-36 157.5 223 50.2
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 1.6e-36 157.1 225 48.0
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.0e-36 156.8 220 48.2
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.6e-36 156.4 264 39.4
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 2.6e-36 156.4 230 43.5
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 7.7e-36 154.8 226 50.4
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.9e-35 152.9 213 50.2
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 1.5e-34 150.6 236 50.0
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.5e-34 150.6 233 45.1
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 1.5e-34 150.6 230 41.3
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 4.2e-34 149.1 222 47.7
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 5.5e-34 148.7 222 42.8
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 5.5e-34 148.7 220 42.3
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 5.5e-34 148.7 257 46.7
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 7.2e-34 148.3 223 40.4
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 7.2e-34 148.3 221 48.4
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 2.7e-33 146.4 224 42.0
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 3.6e-33 146.0 219 42.0
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.6e-33 146.0 228 40.4
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.1e-33 145.2 224 45.5
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 8.0e-33 144.8 221 46.6
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 1.0e-32 144.4 221 45.7
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 1.4e-32 144.1 220 48.6
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 1.8e-32 143.7 222 47.7
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 3.0e-32 142.9 220 42.3
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.2e-31 141.0 214 46.3
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.6e-31 139.8 224 45.1
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 7.5e-31 138.3 214 49.1
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 9.8e-31 137.9 233 45.5
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 1.3e-30 137.5 236 44.5
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.8e-30 136.3 217 42.9
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.8e-30 136.3 221 41.2
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 4.8e-30 135.6 222 39.2
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 6.3e-30 135.2 222 39.6
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 6.3e-30 135.2 234 44.0
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 8.3e-30 134.8 217 43.3
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 1.4e-29 134.0 218 42.2
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 1.8e-29 133.7 158 47.5
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.1e-29 132.9 221 38.0
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 5.4e-29 132.1 160 51.2
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 5.4e-29 132.1 218 42.2
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 7.0e-29 131.7 218 44.5
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 9.1e-29 131.3 223 39.0
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 9.1e-29 131.3 234 43.2
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 9.1e-29 131.3 171 48.0
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 1.2e-28 131.0 224 36.6
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 2.0e-28 130.2 223 39.0
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 2.0e-28 130.2 221 42.5
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.3e-27 127.5 210 41.4
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.3e-27 127.5 169 49.7
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.3e-27 127.5 218 39.9
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.7e-27 127.1 234 44.0
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 2.9e-27 126.3 230 39.1
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 3.8e-27 125.9 223 38.1
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 3.8e-27 125.9 223 38.1
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 3.8e-27 125.9 223 38.6
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 5.0e-27 125.6 222 39.6
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-26 124.0 223 38.6
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 1.5e-26 124.0 222 39.2
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.5e-26 124.0 230 39.1
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 2.5e-26 123.2 236 37.3
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 3.2e-26 122.9 231 38.1
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 7.2e-26 121.7 224 42.0
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 9.4e-26 121.3 229 38.0
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 1.6e-25 120.6 220 37.7
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 2.7e-25 119.8 220 39.1
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 2.7e-25 119.8 220 39.1
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 2.7e-25 119.8 232 41.4
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.6e-25 119.4 221 36.2
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 3.6e-25 119.4 215 39.5
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 4.7e-25 119.0 216 38.9
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 6.1e-25 118.6 218 37.6
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.0e-24 117.9 218 38.5
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 1.4e-24 117.5 226 39.8
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 2.3e-24 116.7 220 38.6
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 2.3e-24 116.7 216 38.4
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 4.0e-24 115.9 223 38.1
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 5.2e-24 115.5 220 35.9
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 5.2e-24 115.5 216 37.5
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 5.2e-24 115.5 224 37.5
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 8.8e-24 114.8 243 37.0
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 2.0e-23 113.6 243 37.0
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 7.5e-23 111.7 236 35.2
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 7.5e-23 111.7 147 63.3
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 6.3e-22 108.6 172 40.7
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 1.1e-21 107.8 224 34.4
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.4e-21 107.5 210 35.2
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 2.4e-21 106.7 224 33.9
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 3.1e-21 106.3 219 36.5
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 4.1e-21 105.9 223 34.1
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 7.0e-21 105.1 218 37.2
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 1.6e-20 104.0 212 37.7
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 1.6e-20 104.0 212 37.7
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 1.6e-20 104.0 212 37.7
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.5e-18 97.4 172 41.9
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 7.2e-18 95.1 247 32.0
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 1.0e-16 91.3 178 35.4
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 1.0e-16 91.3 178 35.4
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.8e-16 90.5 233 39.5
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 6.8e-16 88.6 178 33.1
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 6.8e-16 88.6 178 33.1
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 8.3e-14 81.6 218 30.3
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.4e-13 80.1 218 29.8
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 5.4e-13 79.0 140 37.1
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 7.0e-13 78.6 216 29.2
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 9.2e-13 78.2 110 49.1
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 9.2e-13 78.2 243 33.7
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 3.9e-11 72.8 178 29.2
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 8.6e-11 71.6 41 70.7
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.3e-10 69.7 154 32.5
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 9.5e-10 68.2 154 32.5
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.8e-08 63.9 35 74.3
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 2.3e-08 63.5 170 30.6
MBI01_g34424_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 3.4e-07 59.7 179 26.8
Pp3c14_14200 Physcomitrium patens HOM05D022619 ORTHO05D026045 4.4e-07 59.3 186 25.8
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 5.8e-07 58.9 156 28.2
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 1.3e-06 57.8 50 58.0
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 1.3e-06 57.8 177 26.0
Lalb_Chr22g0349911 Lupinus albus HOM05D003968 ORTHO05D004077 1.3e-06 57.8 77 67.5
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 1.3e-06 57.8 167 31.1
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 2.2e-06 57.0 148 25.0
Pp3c1_32020 Physcomitrium patens HOM05D022619 ORTHO05D026045 2.9e-06 56.6 171 25.7
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 3.7e-06 56.2 159 24.5
Pp3c17_5610 Physcomitrium patens HOM05D022619 ORTHO05D026045 6.4e-06 55.5 179 26.8
SMO146G0238 Selaginella moellendorffii HOM05D003316 ORTHO05D003690 8.3e-06 55.1 182 26.9


User provided reference genes

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