Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 2.8e-244 848.2 439 100.0
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 9.8e-205 716.8 439 84.1
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 1.1e-200 703.4 443 81.9
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.1e-200 703.4 440 82.7
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.1e-200 703.4 438 82.2
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 6.2e-199 697.6 439 81.5
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 8.1e-199 697.2 440 80.9
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 8.1e-199 697.2 440 80.9
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 2.3e-198 695.7 442 82.4
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 8.9e-198 693.7 439 80.9
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 2.6e-197 692.2 440 81.4
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 5.8e-197 691.0 440 80.2
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 9.9e-197 690.3 439 79.5
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.3e-196 689.9 445 79.8
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 1.7e-196 689.5 441 80.3
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.7e-196 689.5 441 81.0
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 2.2e-196 689.1 443 80.8
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 3.7e-196 688.3 439 80.4
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 6.4e-196 687.6 440 80.2
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 8.3e-196 687.2 400 86.8
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.1e-195 686.8 439 81.1
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.9e-195 686.0 400 86.5
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.9e-195 686.0 438 81.1
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 2.1e-194 682.6 438 80.8
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 2.1e-194 682.6 439 79.5
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.5e-194 681.8 438 80.8
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 3.5e-194 681.8 437 80.3
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 4.6e-194 681.4 439 79.5
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 7.8e-194 680.6 437 80.3
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.0e-193 680.2 438 79.5
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 1.3e-193 679.9 445 80.0
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.7e-193 679.5 438 79.5
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 1.7e-193 679.5 440 78.6
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 1.7e-193 679.5 440 80.2
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 5.1e-193 677.9 439 79.7
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 5.1e-193 677.9 446 79.6
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 8.6e-193 677.2 442 78.7
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 8.6e-193 677.2 442 78.7
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 8.6e-193 677.2 440 79.1
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 8.6e-193 677.2 440 80.5
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 2.5e-192 675.6 438 80.1
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 5.6e-192 674.5 438 78.3
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 5.6e-192 674.5 437 79.4
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.2e-191 673.3 440 79.5
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 1.2e-191 673.3 436 78.9
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.6e-191 672.9 439 80.6
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 1.6e-191 672.9 443 79.0
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 1.6e-191 672.9 442 79.0
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 2.1e-191 672.5 440 79.1
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 2.8e-191 672.2 437 78.5
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 2.8e-191 672.2 438 79.7
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 3.6e-191 671.8 438 79.5
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 8.1e-191 670.6 436 78.9
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.1e-190 670.2 436 78.9
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 1.8e-190 669.5 442 79.0
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.8e-190 669.5 396 84.3
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 2.4e-190 669.1 441 77.6
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 4.0e-190 668.3 441 78.7
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 5.2e-190 667.9 440 79.5
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 5.2e-190 667.9 438 78.8
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 6.8e-190 667.5 441 79.6
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.5e-189 666.4 437 78.3
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 2.0e-189 666.0 440 79.3
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 2.0e-189 666.0 440 79.3
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 2.0e-189 666.0 440 78.4
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 2.6e-189 665.6 436 79.4
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 2.6e-189 665.6 439 79.0
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 2.6e-189 665.6 429 80.0
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 4.4e-189 664.8 441 78.2
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 7.6e-189 664.1 413 82.8
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 9.9e-189 663.7 438 79.0
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 1.3e-188 663.3 436 79.1
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 1.7e-188 662.9 439 77.7
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 2.2e-188 662.5 440 76.8
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 2.9e-188 662.1 435 77.0
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 2.9e-188 662.1 441 76.9
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 3.8e-188 661.8 437 78.3
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 4.9e-188 661.4 439 78.6
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 4.9e-188 661.4 441 78.7
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 6.4e-188 661.0 438 77.2
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 8.4e-188 660.6 436 78.7
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.1e-187 660.2 438 78.8
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 2.4e-187 659.1 442 78.7
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 3.2e-187 658.7 440 78.0
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 7.1e-187 657.5 443 77.7
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 7.1e-187 657.5 443 77.7
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 9.2e-187 657.1 436 77.8
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 1.2e-186 656.8 440 77.7
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 1.6e-186 656.4 413 82.1
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 2.7e-186 655.6 438 78.8
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 2.7e-186 655.6 441 77.1
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 2.7e-186 655.6 438 78.1
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 2.7e-186 655.6 438 78.1
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 2.7e-186 655.6 437 78.7
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 3.5e-186 655.2 440 78.6
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 7.8e-186 654.1 437 78.3
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 1.0e-185 653.7 395 82.8
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 2.3e-185 652.5 427 78.9
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 6.6e-185 651.0 438 77.2
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 2.5e-184 649.0 436 76.4
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 7.3e-184 647.5 413 80.1
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 7.3e-184 647.5 413 80.1
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.8e-183 645.6 437 76.9
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 4.0e-182 641.7 378 84.1
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 9.0e-182 640.6 419 78.8
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 4.4e-181 638.3 434 76.7
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 9.9e-181 637.1 415 78.6
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 1.1e-179 633.6 430 76.5
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.2e-178 630.2 397 79.3
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 1.6e-178 629.8 441 74.8
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.5e-176 623.2 377 81.7
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 7.3e-176 620.9 478 69.7
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 2.1e-175 619.4 445 73.7
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 2.8e-175 619.0 488 68.2
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.8e-175 619.0 394 78.7
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 6.2e-175 617.8 438 74.9
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.4e-174 616.7 440 73.9
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.9e-171 606.3 385 80.5
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 3.2e-171 605.5 438 73.7
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.1e-168 597.0 384 81.2
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 9.9e-165 583.9 440 70.7
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.3e-161 573.5 368 81.0
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 5.3e-158 561.6 396 75.8
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 1.7e-148 530.0 400 64.8
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 2.9e-148 529.3 428 65.7
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 3.8e-148 528.9 412 65.3
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 5.0e-148 528.5 361 76.5
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 4.3e-144 515.4 363 67.8
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 4.8e-143 511.9 302 84.1
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 5.0e-140 501.9 402 63.7
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 6.5e-140 501.5 358 70.4
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 8.5e-140 501.1 366 65.8
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.1e-139 500.7 377 66.0
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 9.4e-139 497.7 366 64.5
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 1.2e-138 497.3 400 64.5
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 6.1e-138 495.0 392 62.5
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.0e-137 494.2 377 65.3
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 5.1e-137 491.9 411 61.8
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 4.8e-135 485.3 375 63.2
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.6e-133 479.6 418 61.0
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 8.5e-132 474.6 360 64.4
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 3.6e-130 469.2 374 62.3
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 2.8e-127 459.5 320 73.8
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 5.5e-115 418.7 365 60.3
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 2.9e-100 369.8 368 55.7
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 4.6e-93 345.9 297 60.9
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 1.1e-81 308.1 214 72.4
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 5.4e-70 269.2 187 77.0
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 4.3e-67 259.6 330 43.3
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.9e-59 234.2 139 85.6
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 4.3e-59 233.0 199 60.8
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 1.4e-57 228.0 123 87.0
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 2.2e-55 220.7 154 70.8
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 7.6e-40 169.1 162 55.6
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 2.5e-35 154.1 153 58.2
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 2.2e-34 151.0 119 62.2
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 4.5e-32 143.3 81 86.4
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 3.9e-28 130.2 78 82.1
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 6.7e-28 129.4 80 72.5
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 3.3e-27 127.1 98 60.2
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 1.5e-19 101.7 73 63.0
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 4.8e-18 96.7 53 81.1
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.3e-15 88.6 94 51.1
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 9.1e-09 65.9 36 88.9


User provided reference genes

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