Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 2134.8 1132 100.0
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1714.9 1135 77.6
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1686.0 1135 76.7
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1681.4 1135 76.1
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1670.6 1141 75.5
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1670.2 1136 74.7
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1665.2 1136 75.8
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1664.0 1135 75.1
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1658.3 1135 74.4
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1654.8 1138 75.9
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1651.0 1138 74.9
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1646.3 1138 74.8
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1644.8 1145 74.1
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1644.8 1137 74.1
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1641.7 1137 73.5
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1639.4 1141 73.7
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1637.9 1141 74.3
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1632.5 1144 73.4
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1630.5 1144 73.4
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1629.8 1139 73.3
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1629.4 1135 73.9
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1628.6 1139 73.1
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1628.2 1139 73.2
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1627.5 1136 71.9
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1626.3 1135 73.7
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1625.9 1137 73.1
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1625.5 1135 73.3
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1624.8 1136 71.9
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1623.6 1142 73.1
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1622.8 1136 73.8
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1622.1 1136 73.8
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1621.7 1139 73.0
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1620.9 1139 72.7
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1620.9 1139 72.5
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1619.0 1135 73.1
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1617.8 1135 73.0
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1615.9 1133 72.6
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1612.4 1138 73.2
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1611.7 1135 73.3
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1609.3 1141 72.9
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1607.8 1104 74.5
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1602.0 1136 72.4
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1601.6 1137 71.8
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1600.5 1136 74.1
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1599.7 1141 73.6
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1595.5 1132 72.0
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1595.1 1189 69.1
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1589.3 1137 70.8
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1588.2 1138 72.1
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1587.0 1141 72.6
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1586.6 1112 73.5
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1585.5 1137 72.3
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1583.9 1139 71.0
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1582.4 1139 71.6
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1578.1 1134 71.7
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1572.4 1138 70.9
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1569.7 1139 70.6
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1560.4 1141 70.7
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1554.7 1139 69.6
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1554.7 1135 70.3
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1531.9 1138 68.8
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1528.8 1135 69.2
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1527.3 1139 68.8
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1511.5 1147 67.2
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1511.5 1140 67.6
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1507.7 1136 69.8
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1505.7 1068 71.0
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1501.9 1140 67.9
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1500.0 1135 68.1
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1496.9 1140 67.1
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1490.7 1027 72.9
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1490.3 1140 66.5
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1489.2 1139 66.1
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1485.7 1140 66.5
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1483.8 1140 66.0
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1482.6 1144 68.2
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1482.6 1144 68.2
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1479.5 1142 66.4
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1477.2 1139 66.5
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1476.1 1142 66.4
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1475.7 1142 66.4
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1474.5 1140 66.0
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1472.2 1142 66.4
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1471.8 1010 74.9
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1471.8 1078 69.0
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1470.3 1139 65.0
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1470.3 1140 65.5
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1469.9 1138 67.1
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1467.2 1138 67.4
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1466.1 1140 65.4
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1458.7 1139 65.1
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1454.9 1139 65.0
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1437.6 1078 68.0
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1434.5 1073 70.0
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1409.4 1033 68.8
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1370.5 922 74.9
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1363.6 1097 65.5
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1349.0 1155 61.4
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1345.5 1128 60.7
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1344.7 923 74.2
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1341.6 1078 64.1
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1298.1 1071 61.4
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1292.7 1076 60.1
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1262.7 900 71.3
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1225.7 887 68.8
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1165.2 838 72.1
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1125.5 901 64.7
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1084.3 802 70.4
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 7.7e-310 1067.4 1071 51.3
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 2.2e-304 1049.3 1085 49.6
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 3.2e-292 1008.8 1070 47.6
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 4.2e-292 1008.4 1063 50.2
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 4.1e-287 991.9 672 74.9
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 2.5e-284 982.6 760 65.8
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 5.6e-244 848.6 612 70.9
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 9.2e-239 831.2 895 52.8
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.2e-217 761.1 1090 40.5
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 5.3e-210 735.7 617 60.8
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 1.5e-151 541.6 423 70.0
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 4.9e-147 526.6 376 68.9
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 6.4e-139 499.6 434 63.8
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 6.0e-121 439.9 351 63.0
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 2.8e-94 351.3 316 61.1
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 4.8e-94 350.5 1197 27.6
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 3.8e-91 340.9 1140 28.2
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 1.6e-86 325.5 310 59.4
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 2.4e-85 321.6 361 48.8
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 6.7e-80 303.5 335 57.6
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 5.9e-68 263.8 326 46.9
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 3.2e-58 231.5 323 45.5
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 7.2e-42 177.2 154 64.9
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 3.3e-34 151.8 640 23.0
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 1.3e-30 139.8 111 68.5
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 1.6e-25 122.9 107 67.3
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 2.6e-23 115.5 86 72.1
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 4.4e-23 114.8 72 72.2
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 4.4e-23 114.8 68 75.0
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 1.7e-22 112.8 86 72.1
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 4.4e-07 61.6 95 47.4
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 9.9e-07 60.5 92 44.6


User provided reference genes

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