Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 6.2e-90 334.3 198 100.0
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 1.2e-40 170.6 221 49.3
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.8e-39 165.6 219 47.5
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 1.1e-38 164.1 197 55.8
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.1e-38 164.1 219 47.5
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 2.5e-38 162.9 202 52.5
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 5.5e-38 161.8 207 48.3
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 3.6e-37 159.1 196 51.5
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 6.1e-37 158.3 215 48.4
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.8e-36 156.8 201 51.7
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 3.9e-36 155.6 198 52.0
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.5e-35 153.7 202 50.0
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.5e-35 153.7 199 51.3
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 2.0e-35 153.3 196 50.0
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.0e-35 153.3 204 48.5
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.3e-35 152.5 203 50.2
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 4.4e-35 152.1 197 50.8
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 9.7e-35 151.0 197 50.8
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 9.7e-35 151.0 198 51.0
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.3e-34 150.6 199 48.7
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 2.2e-34 149.8 195 51.3
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 3.7e-34 149.1 191 55.0
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 4.8e-34 148.7 196 48.5
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 4.8e-34 148.7 211 48.3
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 6.3e-34 148.3 214 51.9
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 6.3e-34 148.3 207 45.9
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 1.4e-33 147.1 202 47.5
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 3.1e-33 146.0 197 50.8
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 4.1e-33 145.6 200 48.0
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 5.3e-33 145.2 198 49.5
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 5.3e-33 145.2 201 48.3
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 7.0e-33 144.8 198 48.5
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 7.0e-33 144.8 198 48.5
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 7.0e-33 144.8 198 48.5
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 7.0e-33 144.8 197 48.2
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 1.2e-32 144.1 198 50.0
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 1.2e-32 144.1 200 46.5
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.6e-32 143.7 197 48.2
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 1.6e-32 143.7 197 49.2
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.6e-32 143.7 198 49.5
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 3.5e-32 142.5 197 47.7
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 3.5e-32 142.5 196 51.5
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 4.5e-32 142.1 203 51.7
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 5.9e-32 141.7 198 49.0
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 5.9e-32 141.7 209 46.9
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.0e-31 141.0 200 47.0
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.7e-31 140.2 206 48.1
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 1.7e-31 140.2 211 44.5
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.2e-31 139.8 205 46.3
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 6.5e-31 138.3 214 42.5
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 6.5e-31 138.3 224 46.0
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 8.5e-31 137.9 199 48.7
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.1e-30 137.5 197 48.2
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.1e-30 137.5 200 45.5
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.1e-30 137.5 212 45.3
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.1e-30 137.5 215 45.1
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 1.1e-30 137.5 198 47.0
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 1.9e-30 136.7 211 45.5
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 1.9e-30 136.7 202 47.5
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 2.5e-30 136.3 200 46.0
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 5.5e-30 135.2 212 42.0
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 5.5e-30 135.2 206 47.6
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 7.2e-30 134.8 230 40.9
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 2.7e-29 132.9 211 43.6
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 3.6e-29 132.5 167 53.9
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 1.0e-28 131.0 204 46.6
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 1.8e-28 130.2 193 42.5
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.0e-28 129.4 195 48.2
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.0e-28 129.4 199 53.8
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 3.0e-28 129.4 195 48.2
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 3.0e-28 129.4 199 54.8
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 4.0e-28 129.0 213 44.1
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 4.0e-28 129.0 212 45.3
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 5.2e-28 128.6 198 50.0
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 6.7e-28 128.3 192 49.0
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.8e-28 127.9 195 47.7
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 1.5e-27 127.1 177 51.4
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.5e-27 127.1 217 47.0
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.0e-27 126.7 198 54.0
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.0e-27 126.7 213 47.4
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 2.6e-27 126.3 212 42.9
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.6e-27 126.3 217 40.6
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 4.4e-27 125.6 226 44.7
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.4e-27 125.6 213 47.9
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 5.7e-27 125.2 220 39.1
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 7.5e-27 124.8 167 50.9
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 7.5e-27 124.8 189 46.6
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 7.5e-27 124.8 215 40.9
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 1.3e-26 124.0 193 47.7
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.3e-26 124.0 206 48.1
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 1.7e-26 123.6 219 50.7
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 2.8e-26 122.9 196 46.4
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.8e-26 122.9 198 45.5
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 4.8e-26 122.1 167 50.3
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 4.8e-26 122.1 194 42.8
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 8.2e-26 121.3 198 44.9
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 8.2e-26 121.3 199 44.2
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 1.4e-25 120.6 218 40.4
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 3.1e-25 119.4 198 44.9
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 3.1e-25 119.4 204 40.7
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 3.1e-25 119.4 180 47.2
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 2.0e-24 116.7 213 39.9
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 2.7e-24 116.3 200 47.5
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 3.5e-24 115.9 219 39.3
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 5.9e-24 115.2 229 38.4
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 7.7e-24 114.8 200 48.0
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.0e-23 114.4 220 40.0
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.7e-23 113.6 195 41.0
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.2e-23 113.2 209 39.2
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 3.8e-23 112.5 223 37.7
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 5.0e-23 112.1 210 38.6
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 6.5e-23 111.7 207 38.2
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 2.5e-22 109.8 201 40.8
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 2.5e-22 109.8 168 47.0
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 5.5e-22 108.6 226 35.4
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 7.2e-22 108.2 204 40.7
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 9.4e-22 107.8 196 44.9
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 9.4e-22 107.8 217 41.5
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 1.2e-21 107.5 224 42.4
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 2.7e-21 106.3 203 40.4
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 6.1e-21 105.1 231 39.0
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 1.0e-20 104.4 196 43.4
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 2.3e-20 103.2 218 35.8
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 2.3e-20 103.2 86 67.4
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 3.0e-20 102.8 225 39.6
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 4.0e-20 102.4 236 34.7
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 2.0e-19 100.1 251 33.9
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 3.4e-19 99.4 186 39.2
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 4.4e-19 99.0 196 40.3
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 2.8e-18 96.3 193 42.5
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 4.8e-18 95.5 214 32.7
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 6.3e-18 95.1 192 43.2
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 6.3e-18 95.1 216 35.2
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 1.1e-17 94.4 196 37.8
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.4e-17 94.0 197 43.7
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.4e-17 94.0 197 43.7
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.4e-17 94.0 197 43.7
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.8e-17 93.6 195 37.4
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 3.1e-17 92.8 200 42.5
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 9.1e-17 91.3 77 66.2
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 9.1e-17 91.3 194 41.8
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.2e-16 90.9 81 60.5
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.6e-16 90.5 189 43.9
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.6e-16 90.5 223 33.2
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.6e-16 90.5 205 38.5
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.5e-16 89.0 202 32.7
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 5.9e-16 88.6 249 34.5
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.7e-15 87.0 184 48.4
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 6.5e-15 85.1 206 38.3
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 8.5e-15 84.7 198 32.3
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.1e-14 84.3 188 41.0
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 3.2e-14 82.8 190 35.8
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 3.2e-14 82.8 190 35.8
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 4.2e-14 82.4 198 33.3
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 3.6e-13 79.3 194 36.1
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 3.6e-13 79.3 194 36.1
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 6.1e-13 78.6 199 35.7
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 6.1e-13 78.6 183 33.9
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 8.0e-13 78.2 228 30.3
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 6.8e-12 75.1 86 51.2
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 8.8e-12 74.7 78 56.4
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 4.4e-11 72.4 198 38.4
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.7e-10 70.5 60 60.0
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 1.4e-09 67.4 195 31.3
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.0e-09 65.1 196 32.7
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 9.2e-09 64.7 174 31.0
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 2.0e-08 63.5 67 46.3
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.7e-08 63.2 69 50.7
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 4.5e-08 62.4 167 30.5
Os08g0539200 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 2.3e-07 60.1 176 27.3
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 8.6e-07 58.2 201 30.3
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 8.6e-07 58.2 90 41.1
Os09g0511200 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 1.1e-06 57.8 180 28.3
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 1.1e-06 57.8 199 33.7
QL01p008050 Quercus lobata HOM05D009443 ORTHO05D011568 7.3e-06 55.1 62 51.6


User provided reference genes

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