Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0010800 Simmondsia chinensis HOM05D003184 ORTHO05D000394 1.7e-76 289.3 146 100.0
Sc10g0010710 Simmondsia chinensis HOM05D003184 ORTHO05D000394 4.1e-75 284.6 146 99.3
Sc22g0003570 Simmondsia chinensis HOM05D003184 ORTHO05D000394 8.5e-20 100.9 96 59.4
TWI23G0846 Tripterygium wilfordii HOM05D003184 ORTHO05D000394 1.2e-18 97.1 96 52.1
Thecc.03G137300 Theobroma cacao HOM05D003184 ORTHO05D000394 1.6e-18 96.7 88 55.7
Ciclev10032880m.g Citrus clementina HOM05D003184 ORTHO05D000394 3.0e-17 92.4 99 51.5
TWI14G0265 Tripterygium wilfordii HOM05D003184 ORTHO05D000394 3.9e-17 92.0 96 51.0
Duzib084G1317 Durio zibethinus HOM05D003184 ORTHO05D000394 5.7e-16 88.2 84 53.6
Oeu030646.1 Olea europaea HOM05D003184 ORTHO05D000394 7.4e-16 87.8 85 55.3
CiPaw.11G002400 Carya illinoinensis HOM05D003184 ORTHO05D000394 9.7e-16 87.4 95 51.6
Cfa003173 Carpinus fangiana HOM05D003184 ORTHO05D000394 1.3e-15 87.0 94 52.1
Dinv11214 Davidia involucrata HOM05D003184 ORTHO05D000394 2.2e-15 86.3 85 54.1
Dinv23196 Davidia involucrata HOM05D003184 ORTHO05D000394 4.8e-15 85.1 85 54.1
Gorai.006G272700 Gossypium raimondii HOM05D003184 ORTHO05D000394 6.3e-15 84.7 88 52.3
Haze_07123 Corylus avellana HOM05D003184 ORTHO05D000394 1.1e-14 84.0 94 53.2
Actinidia08895 Actinidia chinensis HOM05D003184 ORTHO05D000394 1.4e-14 83.6 87 54.0
Gohir.D09G248400 Gossypium hirsutum HOM05D003184 ORTHO05D000394 1.8e-14 83.2 88 52.3
Potri.015G103600 Populus trichocarpa HOM05D003184 ORTHO05D000394 3.1e-14 82.4 99 48.5
EL10Ac5g11337 Beta vulgaris HOM05D003184 ORTHO05D000394 5.3e-14 81.6 96 52.1
Peaxi162Scf01064g00117 Petunia axillaris HOM05D003184 ORTHO05D000394 7.0e-14 81.3 85 47.1
CSS0031765 Camellia sinensis var. sinensis HOM05D003184 ORTHO05D000394 9.1e-14 80.9 85 51.8
FAN13G0038 Fragaria x ananassa HOM05D003184 ORTHO05D000394 9.1e-14 80.9 95 47.4
RcHm_v2.0_Chr7g0189121 Rosa chinensis HOM05D003184 ORTHO05D000394 9.1e-14 80.9 84 51.2
COL.COLO4_16682 Corchorus olitorius HOM05D003184 ORTHO05D000394 1.2e-13 80.5 95 42.1
MELO3C026176.2 Cucumis melo HOM05D003184 ORTHO05D000394 2.6e-13 79.3 103 48.5
CsaV3_1G000220 Cucumis sativus L. HOM05D003184 ORTHO05D000394 2.6e-13 79.3 93 51.6
Peaxi162Scf01064g00114 Petunia axillaris HOM05D003184 ORTHO05D000394 3.5e-13 79.0 85 45.9
Sabra15G0123100 Salix brachista HOM05D003184 ORTHO05D000394 3.5e-13 79.0 81 51.9
FAN08G1332 Fragaria x ananassa HOM05D003184 ORTHO05D000394 4.5e-13 78.6 95 47.4
QL10p001098 Quercus lobata HOM05D003184 ORTHO05D000394 4.5e-13 78.6 95 45.3
SalBow1G6178 Salvia bowleyana HOM05D003184 ORTHO05D000394 4.5e-13 78.6 85 48.2
TAR374G1504 Trochodendron aralioides HOM05D003184 ORTHO05D000394 4.5e-13 78.6 95 47.4
Cpa.g.sc4.123 Carica papaya HOM05D003184 ORTHO05D000394 5.9e-13 78.2 81 51.9
Migut.O00352 Erythranthe guttata HOM05D003184 ORTHO05D000394 7.7e-13 77.8 97 43.3
Gohir.A11G037800 Gossypium hirsutum HOM05D003184 ORTHO05D000394 7.7e-13 77.8 85 48.2
Gohir.D11G041000 Gossypium hirsutum HOM05D003184 ORTHO05D000394 7.7e-13 77.8 85 48.2
Gorai.007G044200 Gossypium raimondii HOM05D003184 ORTHO05D000394 7.7e-13 77.8 85 48.2
Nitab4.5_0000033g0210 Nicotiana tabacum HOM05D003184 ORTHO05D000394 7.7e-13 77.8 85 44.7
Nitab4.5_0000854g0010 Nicotiana tabacum HOM05D003184 ORTHO05D000394 1.0e-12 77.4 85 45.9
TAR622G0113 Trochodendron aralioides HOM05D003184 ORTHO05D000394 1.0e-12 77.4 95 46.3
FvH4_5g09090 Fragaria vesca HOM05D003184 ORTHO05D000394 1.3e-12 77.0 95 47.4
FAN18G2274 Fragaria x ananassa HOM05D003184 ORTHO05D000394 1.3e-12 77.0 95 47.4
Peaxi162Scf01064g00115 Petunia axillaris HOM05D003184 ORTHO05D000394 1.3e-12 77.0 85 44.7
Cc04_g09480 Coffea canephora HOM05D003184 ORTHO05D000394 1.7e-12 76.6 85 44.7
FAN04G2802 Fragaria x ananassa HOM05D003184 ORTHO05D000394 1.7e-12 76.6 95 48.4
Actinidia18321 Actinidia chinensis HOM05D003184 ORTHO05D000394 2.2e-12 76.3 89 51.7
Cfa018731 Carpinus fangiana HOM05D003184 ORTHO05D000394 2.2e-12 76.3 95 47.4
Lj9A484T61 Lonicera japonica HOM05D003184 ORTHO05D000394 2.2e-12 76.3 96 44.8
Sed0014743 Sechium edule HOM05D003184 ORTHO05D000394 2.2e-12 76.3 85 49.4
Actinidia25537 Actinidia chinensis HOM05D003184 ORTHO05D000394 2.9e-12 75.9 88 48.9
Manes.06G124500 Manihot esculenta HOM05D003184 ORTHO05D000394 2.9e-12 75.9 94 43.6
Nitab4.5_0017715g0010 Nicotiana tabacum HOM05D003184 ORTHO05D000394 5.0e-12 75.1 85 44.7
Actinidia36831 Actinidia chinensis HOM05D003184 ORTHO05D000394 6.5e-12 74.7 85 48.2
PGSC0003DMG400026944 Solanum tuberosum HOM05D003184 ORTHO05D000394 8.5e-12 74.3 85 44.7
ClCG06G018210 Citrullus lanatus HOM05D003184 ORTHO05D000394 1.1e-11 73.9 88 50.0
MD06G1133900 Malus domestica HOM05D003184 ORTHO05D000394 1.1e-11 73.9 96 43.8
MD14G1150200 Malus domestica HOM05D003184 ORTHO05D000394 1.1e-11 73.9 96 43.8
Nitab4.5_0001825g0030 Nicotiana tabacum HOM05D003184 ORTHO05D000394 1.5e-11 73.6 96 41.7
Prupe.5G144900 Prunus persica HOM05D003184 ORTHO05D000394 1.5e-11 73.6 95 43.2
SGA_v2.0_scaffold40G15593 Striga asiatica HOM05D003184 ORTHO05D000394 2.5e-11 72.8 86 48.8
ATR0582G016 Amborella trichopoda HOM05D000748 ORTHO05D000394 3.2e-11 72.4 85 44.7
MSTRG.4625 Avicennia marina HOM05D003184 ORTHO05D000394 3.2e-11 72.4 88 44.3
GSVIVG01008618001 Vitis vinifera HOM05D003184 ORTHO05D000394 4.2e-11 72.0 84 45.2
Nn3g16336 Nelumbo nucifera HOM05D003184 ORTHO05D000394 5.5e-11 71.6 85 49.4
Duzib068G0614 Durio zibethinus HOM05D003184 ORTHO05D000394 7.2e-11 71.2 95 42.1
Potri.012G104300 Populus trichocarpa HOM05D003184 ORTHO05D000394 1.6e-10 70.1 95 43.2
CSS0009721 Camellia sinensis var. sinensis HOM05D003184 ORTHO05D000394 2.1e-10 69.7 85 44.7
HanXRQChr16g0498791 Helianthus annuus HOM05D003184 ORTHO05D000394 2.1e-10 69.7 85 47.1
Solyc06g072530.3 Solanum lycopersicum HOM05D003184 ORTHO05D000394 2.1e-10 69.7 96 37.5
Sopen06g028900 Solanum pennellii HOM05D003184 ORTHO05D000394 2.1e-10 69.7 96 37.5
PGSC0003DMG400026945 Solanum tuberosum HOM05D003184 ORTHO05D000394 2.1e-10 69.7 96 39.6
MSTRG.22885 Avicennia marina HOM05D003184 ORTHO05D000394 3.6e-10 68.9 85 47.1
CSS0007105 Camellia sinensis var. sinensis HOM05D003184 ORTHO05D000394 8.0e-10 67.8 87 42.5
ECA232G0468 Erigeron canadensis HOM05D003184 ORTHO05D000394 8.0e-10 67.8 85 48.2
Lsat_1_v5_gn_4_82801 Lactuca sativa HOM05D003184 ORTHO05D000394 8.0e-10 67.8 85 47.1
Manes.14G046800 Manihot esculenta HOM05D003184 ORTHO05D000394 8.0e-10 67.8 85 41.2
Nitab4.5_0001451g0040 Nicotiana tabacum HOM05D003184 ORTHO05D000394 8.0e-10 67.8 85 41.2
Solyc06g072550.3 Solanum lycopersicum HOM05D003184 ORTHO05D000394 8.0e-10 67.8 85 43.5
Sopen06g028910 Solanum pennellii HOM05D003184 ORTHO05D000394 8.0e-10 67.8 85 43.5
Sabra12G0076700 Salix brachista HOM05D003184 ORTHO05D000394 1.4e-09 67.0 84 44.0
Migut.D01302 Erythranthe guttata HOM05D003184 ORTHO05D000394 1.8e-09 66.6 85 44.7
HanXRQChr09g0273611 Helianthus annuus HOM05D003184 ORTHO05D000394 2.3e-09 66.2 85 44.7
Nn4g22197 Nelumbo nucifera HOM05D003184 ORTHO05D000394 2.3e-09 66.2 85 43.5
MBI07_g37485_MAGBIO Magnolia biondii HOM05D000748 ORTHO05D000394 3.0e-09 65.9 93 40.9
arahy.Tifrunner.gnm1.ann1.BTBE2F Arachis hypogaea HOM05D003184 ORTHO05D000394 6.7e-09 64.7 88 46.6
arahy.Tifrunner.gnm1.ann1.A2ENIY Arachis hypogaea HOM05D003184 ORTHO05D000394 1.2e-08 63.9 88 45.5
Rhsim08G0194800 Rhododendron simsii HOM05D003184 ORTHO05D000394 1.2e-08 63.9 84 42.9
vmacro19159 Vaccinium macrocarpon HOM05D003184 ORTHO05D000394 1.5e-08 63.5 85 41.2
Nitab4.5_0001451g0020 Nicotiana tabacum HOM05D003184 ORTHO05D000394 2.0e-08 63.2 110 38.2
ATR0582G194 Amborella trichopoda HOM05D003184 ORTHO05D000394 3.3e-08 62.4 85 43.5
Peaxi162Scf00171g01125 Petunia axillaris HOM05D003184 ORTHO05D000394 3.3e-08 62.4 85 40.0
SalBow5G4450 Salvia bowleyana HOM05D003184 ORTHO05D000394 3.3e-08 62.4 85 40.0
Nitab4.5_0001825g0040 Nicotiana tabacum HOM05D003184 ORTHO05D000394 4.4e-08 62.0 95 40.0
Nitab4.5_0002773g0040 Nicotiana tabacum HOM05D003184 ORTHO05D000394 5.7e-08 61.6 86 40.7
Rhsim10G0002700 Rhododendron simsii HOM05D003184 ORTHO05D000394 7.5e-08 61.2 87 46.0
Peaxi162Scf00171g01124 Petunia axillaris HOM05D003184 ORTHO05D000394 1.3e-07 60.5 85 43.5
Lj5A91T55 Lonicera japonica HOM05D003184 ORTHO05D000394 2.2e-07 59.7 87 44.8
MBI07_g32534_MAGBIO Magnolia biondii HOM05D000748 ORTHO05D000394 2.2e-07 59.7 61 50.8
Solyc03g097720.4 Solanum lycopersicum HOM05D003184 ORTHO05D000394 2.2e-07 59.7 96 33.3
THA.LOC104808044 Tarenaya hassleriana HOM05D003184 ORTHO05D000394 2.2e-07 59.7 64 50.0
PGSC0003DMG400012025 Solanum tuberosum HOM05D003184 ORTHO05D000394 2.8e-07 59.3 85 34.1
Dinv25627 Davidia involucrata HOM05D003184 ORTHO05D000394 3.7e-07 58.9 85 42.4
Hma1.2p1_0421F.1_g150040 Hydrangea macrophylla HOM05D003184 ORTHO05D000394 3.7e-07 58.9 82 37.8
Solyc03g097730.2 Solanum lycopersicum HOM05D003184 ORTHO05D000394 3.7e-07 58.9 100 40.0
Sc07g0003650 Simmondsia chinensis HOM05D003184 ORTHO05D000394 4.8e-07 58.5 85 40.0
ATR0582G135 Amborella trichopoda HOM05D000748 ORTHO05D000394 6.3e-07 58.2 95 36.8
Dinv33298 Davidia involucrata HOM05D003184 ORTHO05D000394 8.2e-07 57.8 85 40.0
Cpa.g.sc70.94 Carica papaya HOM05D003184 ORTHO05D000394 1.4e-06 57.0 86 41.9
SHI14135 Sapria himalayana HOM05D003184 ORTHO05D000394 1.4e-06 57.0 85 47.1
MBI07_g12790_MAGBIO Magnolia biondii HOM05D000748 ORTHO05D000394 1.8e-06 56.6 48 56.2
Actinidia11035 Actinidia chinensis HOM05D000748 ORTHO05D000394 2.4e-06 56.2 69 40.6
Gohir.A09G247650 Gossypium hirsutum HOM05D003184 ORTHO05D000394 2.4e-06 56.2 56 58.9
Manes.04G090520 Manihot esculenta HOM05D003184 ORTHO05D000394 2.4e-06 56.2 84 38.1
SalBow8G0734 Salvia bowleyana HOM05D003185 ORTHO05D009915 2.4e-06 56.2 66 43.9
SalBow8G4396 Salvia bowleyana HOM05D003185 ORTHO05D009915 2.4e-06 56.2 66 43.9
Aa31LG7G10630 Aethionema arabicum HOM05D003184 ORTHO05D000394 3.1e-06 55.8 84 36.9
Migut.M01144 Erythranthe guttata HOM05D000748 ORTHO05D000394 3.1e-06 55.8 59 49.2
Eucgr.I01612 Eucalyptus grandis HOM05D003184 ORTHO05D000394 3.1e-06 55.8 82 40.2
PGR142G2053 Punica granatum HOM05D003184 ORTHO05D000394 3.1e-06 55.8 83 37.3
Sc21g0002840 Simmondsia chinensis HOM05D000748 ORTHO05D000394 3.1e-06 55.8 61 45.9
Actinidia23302 Actinidia chinensis HOM05D003184 ORTHO05D000394 4.1e-06 55.5 87 41.4
Rhsim12G0178600 Rhododendron simsii HOM05D003184 ORTHO05D000394 4.1e-06 55.5 85 43.5
Cfa014614 Carpinus fangiana HOM05D000748 ORTHO05D000394 5.3e-06 55.1 61 44.3
Oeu045571.1 Olea europaea HOM05D003184 ORTHO05D000394 5.3e-06 55.1 95 33.7
PGR083G0980 Punica granatum HOM05D003184 ORTHO05D000394 5.3e-06 55.1 85 40.0
Haze_13159 Corylus avellana HOM05D000748 ORTHO05D000394 7.0e-06 54.7 61 44.3
MD09G1005700 Malus domestica HOM05D003184 ORTHO05D000394 9.1e-06 54.3 84 35.7


User provided reference genes

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