Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 0.0e+00 1647.5 835 100.0
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 1.9e-217 760.0 940 50.9
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 3.4e-214 749.2 923 51.5
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 1.0e-210 737.6 939 50.6
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 6.0e-203 711.8 945 48.6
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 5.1e-202 708.8 941 48.4
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 6.7e-194 681.8 912 48.2
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 5.3e-183 645.6 950 46.1
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 6.9e-183 645.2 874 47.7
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 4.3e-177 625.9 877 47.1
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 9.7e-177 624.8 871 46.8
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 3.7e-176 622.9 911 45.4
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 4.8e-176 622.5 879 46.4
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 3.1e-175 619.8 909 46.3
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 5.0e-173 612.5 910 45.6
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 5.0e-173 612.5 987 43.7
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 3.2e-172 609.8 947 44.4
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 1.2e-171 607.8 899 45.6
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 5.1e-170 602.4 794 47.6
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.3e-168 597.8 949 44.2
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 1.3e-168 597.8 883 45.9
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 8.2e-168 595.1 1082 40.2
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 4.1e-167 592.8 849 45.7
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 5.3e-167 592.4 877 45.2
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 1.2e-166 591.3 935 43.4
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 2.0e-166 590.5 879 45.5
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 6.5e-165 585.5 850 45.6
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 1.1e-161 574.7 1063 40.1
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 1.5e-161 574.3 863 45.8
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 1.5e-161 574.3 871 44.9
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 2.0e-161 573.9 848 47.5
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 2.0e-161 573.9 873 44.0
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 1.1e-159 568.2 885 45.0
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 1.4e-159 567.8 843 45.9
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 1.4e-159 567.8 1008 42.7
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 2.0e-158 563.9 507 61.1
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 1.5e-156 557.8 512 60.2
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 7.2e-156 555.4 867 45.0
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 1.2e-155 554.7 881 44.7
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 1.0e-154 551.6 892 43.7
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 1.8e-154 550.8 519 58.8
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 3.0e-154 550.1 507 60.9
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 4.0e-154 549.7 1005 40.5
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 1.5e-153 547.7 502 61.2
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 2.6e-153 547.0 868 43.0
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 2.6e-153 547.0 553 55.7
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 3.3e-153 546.6 859 43.8
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 2.2e-152 543.9 517 59.6
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 2.8e-152 543.5 905 44.0
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.4e-151 540.4 863 42.9
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 3.1e-151 540.0 562 57.3
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 1.2e-150 538.1 528 58.1
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 4.5e-150 536.2 861 43.0
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 1.0e-149 535.0 937 41.5
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 1.7e-149 534.3 562 57.1
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 1.5e-148 531.2 865 41.7
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 1.9e-148 530.8 555 57.1
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 1.6e-147 527.7 810 45.2
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 2.1e-147 527.3 860 40.1
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 3.6e-147 526.6 952 40.8
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.0e-146 525.0 903 41.7
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 1.2e-145 521.5 871 41.7
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 1.7e-144 517.7 869 41.5
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 1.1e-143 515.0 875 43.5
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 5.4e-143 512.7 874 41.5
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 1.1e-140 505.0 867 41.9
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 4.7e-139 499.6 904 42.0
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 1.0e-138 498.4 476 58.4
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 5.2e-138 496.1 784 42.9
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 2.0e-137 494.2 445 60.4
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 2.6e-137 493.8 861 40.5
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 4.4e-137 493.0 465 59.1
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 6.3e-136 489.2 863 41.1
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 3.5e-134 483.4 421 62.9
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 3.5e-134 483.4 915 40.9
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 1.0e-133 481.9 482 56.4
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 5.6e-132 476.1 451 57.6
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 1.8e-130 471.1 854 40.3
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 8.9e-130 468.8 840 39.8
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 8.9e-130 468.8 848 40.0
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 9.8e-129 465.3 844 39.7
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 2.9e-128 463.8 930 39.5
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 3.5e-126 456.8 611 46.6
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 1.0e-125 455.3 398 60.6
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 1.7e-125 454.5 508 53.7
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 2.3e-125 454.1 917 38.7
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 3.0e-125 453.8 583 49.4
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 1.5e-124 451.4 450 55.3
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 1.9e-124 451.1 433 56.4
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 5.6e-124 449.5 619 45.6
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 7.3e-124 449.1 433 56.6
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 7.3e-124 449.1 474 54.6
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 1.2e-121 441.8 422 57.1
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 2.4e-119 434.1 497 51.5
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 4.1e-119 433.3 498 52.4
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 2.1e-118 431.0 460 53.0
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 2.4e-111 407.5 889 37.2
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 2.8e-107 394.0 392 56.4
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 1.8e-106 391.3 428 51.9
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 1.7e-104 384.8 669 41.1
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 2.9e-104 384.0 261 74.3
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 3.8e-104 383.6 785 38.2
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 5.4e-103 379.8 893 34.8
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 3.8e-80 303.9 510 40.2
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 3.9e-69 267.3 286 52.4
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 2.6e-52 211.5 593 35.6
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 1.7e-40 172.2 208 43.8
Actinidia28212 Actinidia chinensis HOM05D006304 ORTHO05D008584 8.8e-37 159.8 193 47.7
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 8.3e-35 153.3 109 71.6
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 1.4e-29 136.0 113 61.9
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 1.8e-18 99.0 84 63.1
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 5.9e-17 94.0 78 66.7
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 7.8e-17 93.6 89 56.2
Duzib084G1176 Durio zibethinus HOM05D006304 ORTHO05D008584 7.0e-10 70.5 69 53.6
CSS0027880 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 8.6e-08 63.5 133 38.3
Dinv19923 Davidia involucrata HOM05D006304 ORTHO05D008584 4.3e-07 61.2 148 31.8


User provided reference genes

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