Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 3.7e-227 791.2 396 100.0
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 2.2e-126 456.4 399 60.2
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 1.3e-123 447.2 403 57.1
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 6.1e-121 438.3 402 58.0
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 3.9e-120 435.6 404 56.4
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 3.3e-119 432.6 399 56.1
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 1.6e-116 423.7 399 55.6
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 2.6e-116 422.9 395 55.2
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 1.3e-115 420.6 395 54.7
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 4.2e-114 415.6 395 53.4
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 9.4e-114 414.5 395 53.9
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 1.6e-113 413.7 396 52.8
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 2.3e-112 409.8 393 53.2
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 3.0e-112 409.5 393 53.2
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 4.0e-112 409.1 391 54.2
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 5.2e-112 408.7 393 52.9
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 1.2e-111 407.5 390 54.9
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 1.5e-111 407.1 393 53.4
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 3.3e-111 406.0 395 53.7
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 1.3e-110 404.1 393 52.4
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 3.7e-110 402.5 393 52.9
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 3.7e-110 402.5 393 52.9
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 1.1e-109 401.0 397 52.1
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 1.4e-109 400.6 395 52.7
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 4.1e-109 399.1 392 52.6
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 7.0e-109 398.3 393 52.2
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 1.2e-108 397.5 387 53.5
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 1.3e-107 394.0 393 52.4
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 1.7e-107 393.7 395 50.1
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 5.0e-107 392.1 391 53.7
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 6.5e-107 391.7 391 53.2
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 1.1e-106 391.0 394 52.3
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 4.2e-106 389.0 395 51.1
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 7.2e-106 388.3 393 52.7
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 1.6e-105 387.1 395 49.1
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 1.6e-105 387.1 392 51.8
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 1.6e-105 387.1 394 51.8
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 2.1e-105 386.7 394 51.5
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 1.0e-104 384.4 374 51.6
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 1.8e-104 383.6 392 49.5
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 2.3e-104 383.3 395 50.6
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 6.8e-104 381.7 393 49.4
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 8.8e-104 381.3 396 49.0
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 1.5e-103 380.6 390 50.8
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 2.0e-103 380.2 410 49.0
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 3.4e-103 379.4 395 50.9
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 4.4e-103 379.0 390 51.5
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 5.7e-103 378.6 394 49.2
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 1.3e-102 377.5 377 52.5
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 1.3e-102 377.5 396 48.5
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 1.7e-102 377.1 390 49.0
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 2.8e-102 376.3 395 49.1
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 1.1e-101 374.4 390 51.5
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 1.4e-101 374.0 399 50.1
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 1.8e-101 373.6 393 50.9
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 2.4e-101 373.2 390 49.5
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 5.4e-101 372.1 392 49.2
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 1.6e-100 370.5 393 48.1
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 4.5e-100 369.0 390 48.7
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 5.9e-100 368.6 393 47.6
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 1.7e-99 367.1 395 46.6
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 3.8e-99 365.9 398 49.7
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 8.6e-99 364.8 389 51.2
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 1.1e-98 364.4 395 47.8
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 3.3e-98 362.8 395 48.1
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 4.2e-98 362.5 354 53.1
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 4.2e-98 362.5 395 47.8
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 7.2e-98 361.7 390 48.7
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 1.2e-97 360.9 390 49.0
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 2.1e-97 360.1 417 46.0
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 2.1e-97 360.1 417 46.0
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 2.1e-97 360.1 394 49.2
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 3.6e-97 359.4 390 47.9
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 1.0e-96 357.8 417 45.8
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 1.8e-96 357.1 388 47.9
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 3.0e-96 356.3 390 47.7
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 6.8e-96 355.1 390 47.2
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 8.9e-96 354.8 394 49.5
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 2.0e-95 353.6 390 46.9
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 5.7e-95 352.1 392 46.4
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 5.7e-95 352.1 390 46.7
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 1.3e-94 350.9 395 47.6
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 1.7e-94 350.5 389 46.5
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 4.9e-94 349.0 413 45.8
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 1.1e-93 347.8 390 46.4
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 1.4e-93 347.4 413 46.2
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 4.1e-93 345.9 397 46.3
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 1.6e-92 344.0 389 46.8
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 3.5e-92 342.8 391 46.3
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 1.0e-91 341.3 396 46.2
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 5.0e-91 339.0 401 47.1
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 1.1e-90 337.8 390 45.4
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 1.9e-90 337.0 408 45.8
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 1.9e-90 337.0 391 46.5
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 1.4e-88 330.9 391 46.8
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 3.4e-87 326.2 390 47.4
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 3.4e-87 326.2 394 44.4
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 4.4e-87 325.9 396 44.9
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 6.4e-86 322.0 267 59.6
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 2.4e-85 320.1 393 45.5
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 3.5e-84 316.2 386 46.9
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 3.9e-83 312.8 347 49.0
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 6.6e-83 312.0 273 55.3
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 7.3e-82 308.5 392 43.6
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 7.3e-82 308.5 395 43.8
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 1.1e-80 304.7 394 44.2
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 1.2e-79 301.2 388 41.8
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 7.0e-77 292.0 392 41.8
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 6.6e-75 285.4 323 46.4
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 1.1e-74 284.6 313 51.4
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 6.0e-68 262.3 273 50.2
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 2.2e-62 243.8 181 64.1
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 4.8e-57 226.1 421 35.9
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 1.7e-46 191.0 226 42.0
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 1.5e-39 167.9 368 31.5
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 3.4e-39 166.8 383 29.2
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 5.7e-34 149.4 311 31.8
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 6.9e-32 142.5 313 34.2
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 2.2e-25 120.9 332 27.4
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 8.2e-25 119.0 181 44.2
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 2.0e-23 114.4 346 25.1
Aa31LG9G8990 Aethionema arabicum HOM05D000710 ORTHO05D000336 3.4e-23 113.6 268 31.3
Nn5g27265 Nelumbo nucifera HOM05D002504 ORTHO05D007555 3.8e-22 110.2 435 26.4
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 1.4e-21 108.2 256 31.2
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 3.2e-21 107.1 366 25.1
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 3.2e-21 107.1 366 25.1
Ciclev10033409m.g Citrus clementina HOM05D002504 ORTHO05D007555 1.2e-20 105.1 181 37.6
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 1.4e-11 75.1 257 24.5
AagrBONN_evm.TU.Sc2ySwM_362.2581 Anthoceros agrestis HOM05D002504 ORTHO05D007555 2.2e-06 57.8 169 24.9


User provided reference genes

Program Settings