Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0009920 Simmondsia chinensis HOM05D005938 ORTHO05D007654 8.3e-177 623.6 320 100.0
Atru.chr9.2268 Acer truncatum HOM05D005938 ORTHO05D007654 3.0e-126 455.7 314 74.5
Glyma.06G192800 Glycine max HOM05D005938 ORTHO05D007654 3.3e-125 452.2 311 74.9
CSS0017360 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.3e-124 450.3 318 73.3
CSS0040883 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.3e-124 450.3 318 73.3
GSVIVG01008024001 Vitis vinifera HOM05D005938 ORTHO05D007654 3.1e-123 445.7 317 71.3
Lalb_Chr08g0235801 Lupinus albus HOM05D005938 ORTHO05D007654 6.9e-123 444.5 311 72.7
Actinidia34992 Actinidia chinensis HOM05D005938 ORTHO05D007654 9.9e-122 440.7 316 72.2
Gohir.D12G179280 Gossypium hirsutum HOM05D005938 ORTHO05D007654 2.2e-121 439.5 320 70.6
QL10p016543 Quercus lobata HOM05D005938 ORTHO05D007654 2.9e-121 439.1 309 73.5
CiPaw.11G042800 Carya illinoinensis HOM05D005938 ORTHO05D007654 3.8e-121 438.7 321 70.4
Ca_13688_v3 Cicer arietinum L. HOM05D005938 ORTHO05D007654 2.4e-120 436.0 309 71.5
CsaV3_1G002270 Cucumis sativus L. HOM05D005938 ORTHO05D007654 2.4e-120 436.0 309 73.1
Lj1g0012745 Lotus japonicus HOM05D005938 ORTHO05D007654 4.2e-120 435.3 311 69.8
Sed0010411 Sechium edule HOM05D005938 ORTHO05D007654 4.2e-120 435.3 309 74.4
Phvul.009G188150 Phaseolus vulgaris HOM05D005938 ORTHO05D007654 5.4e-120 434.9 311 72.0
Prupe.5G190900 Prunus persica HOM05D005938 ORTHO05D007654 1.6e-119 433.3 310 71.3
Gohir.A12G176500 Gossypium hirsutum HOM05D005938 ORTHO05D007654 1.0e-118 430.6 320 68.8
Nn3g17204 Nelumbo nucifera HOM05D005938 ORTHO05D007654 2.3e-118 429.5 315 69.2
EL10Ac5g10981 Beta vulgaris HOM05D005938 ORTHO05D007654 3.9e-118 428.7 270 78.1
Rhsim12G0157100 Rhododendron simsii HOM05D005938 ORTHO05D007654 3.9e-118 428.7 321 69.5
COL.COLO4_24542 Corchorus olitorius HOM05D005938 ORTHO05D007654 5.1e-118 428.3 288 75.7
MELO3C017167.2 Cucumis melo HOM05D005938 ORTHO05D007654 6.7e-118 427.9 309 72.2
TPR.G11812 Trifolium pratense HOM05D005938 ORTHO05D007654 6.7e-118 427.9 313 71.2
TAR374G0085 Trochodendron aralioides HOM05D005938 ORTHO05D007654 6.7e-118 427.9 315 69.5
Hund09357 Selenicereus undatus HOM05D005938 ORTHO05D007654 8.7e-118 427.6 307 72.0
Ah.02g113360 Amaranthus hybridus HOM05D005938 ORTHO05D007654 1.1e-117 427.2 271 76.4
Eucgr.A02632 Eucalyptus grandis HOM05D005938 ORTHO05D007654 2.5e-117 426.0 320 69.7
Ciclev10021191m.g Citrus clementina HOM05D005938 ORTHO05D007654 3.3e-117 425.6 309 71.2
Nitab4.5_0004103g0010 Nicotiana tabacum HOM05D005938 ORTHO05D007654 6.2e-116 421.4 316 68.7
TWI15G1099 Tripterygium wilfordii HOM05D005938 ORTHO05D007654 8.1e-116 421.0 263 77.6
CANSAT80G1410 Cannabis sativa HOM05D005938 ORTHO05D007654 1.1e-115 420.6 311 68.5
arahy.Tifrunner.gnm1.ann1.KGI6NM Arachis hypogaea HOM05D005938 ORTHO05D007654 1.8e-115 419.9 320 67.5
arahy.Tifrunner.gnm1.ann1.VVHC1U Arachis hypogaea HOM05D005938 ORTHO05D007654 3.1e-115 419.1 320 67.2
TAR622G1433 Trochodendron aralioides HOM05D005938 ORTHO05D007654 2.0e-114 416.4 285 73.7
MD14G1198100 Malus domestica HOM05D005938 ORTHO05D007654 5.8e-114 414.8 311 68.8
AUR62021711 Chenopodium quinoa HOM05D005938 ORTHO05D007654 7.6e-114 414.5 263 77.6
Lj9A462G75 Lonicera japonica HOM05D005938 ORTHO05D007654 1.3e-113 413.7 287 72.5
PGSC0003DMG400000598 Solanum tuberosum HOM05D005938 ORTHO05D007654 1.3e-113 413.7 316 66.8
Cfa018959 Carpinus fangiana HOM05D005938 ORTHO05D007654 8.4e-113 411.0 265 77.7
MD06G1191700 Malus domestica HOM05D005938 ORTHO05D007654 8.4e-113 411.0 311 69.8
Potri.018G047400 Populus trichocarpa HOM05D005938 ORTHO05D007654 1.1e-112 410.6 288 72.9
vmacro16554 Vaccinium macrocarpon HOM05D005938 ORTHO05D007654 1.9e-112 409.8 349 63.6
Solyc03g116330.3 Solanum lycopersicum HOM05D005938 ORTHO05D007654 3.2e-112 409.1 316 66.1
PGR083G1660 Punica granatum HOM05D005938 ORTHO05D007654 5.5e-112 408.3 315 67.0
AUR62008387 Chenopodium quinoa HOM05D005938 ORTHO05D007654 9.3e-112 407.5 263 76.4
CAN.G407.117 Capsicum annuum HOM05D005938 ORTHO05D007654 2.1e-111 406.4 316 66.5
FAN08G1160 Fragaria x ananassa HOM05D005938 ORTHO05D007654 7.9e-111 404.4 308 66.6
PSO063G3647 Papaver somniferum HOM05D005938 ORTHO05D007654 7.9e-111 404.4 319 66.5
FvH4_5g15170 Fragaria vesca HOM05D005938 ORTHO05D007654 1.3e-110 403.7 307 67.1
Duzib205G1012 Durio zibethinus HOM05D005938 ORTHO05D007654 1.8e-110 403.3 317 69.1
Thecc.03G084300 Theobroma cacao HOM05D005938 ORTHO05D007654 1.8e-110 403.3 317 67.5
Cc04_g16920 Coffea canephora HOM05D005938 ORTHO05D007654 3.0e-110 402.5 319 65.5
Nitab4.5_0002257g0140 Nicotiana tabacum HOM05D005938 ORTHO05D007654 3.9e-110 402.1 344 61.9
Peaxi162Scf00274g00846 Petunia axillaris HOM05D005938 ORTHO05D007654 1.5e-109 400.2 322 65.2
FAN13G2109 Fragaria x ananassa HOM05D005938 ORTHO05D007654 9.6e-109 397.5 301 67.1
FAN18G0122 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.6e-108 396.7 301 67.4
RcHm_v2.0_Chr7g0181011 Rosa chinensis HOM05D005938 ORTHO05D007654 1.6e-108 396.7 309 67.0
Cpa.g.c30141.1 Carica papaya HOM05D005938 ORTHO05D007654 2.1e-108 396.4 263 74.5
Atru.BG.195.p Acer truncatum HOM05D005938 ORTHO05D007654 2.8e-108 396.0 255 77.6
MSTRG.9633 Avicennia marina HOM05D005938 ORTHO05D007654 2.8e-108 396.0 320 61.9
Migut.D01830 Erythranthe guttata HOM05D005938 ORTHO05D007654 2.8e-108 396.0 318 63.8
Sabra18G0045600 Salix brachista HOM05D005938 ORTHO05D007654 2.8e-108 396.0 319 64.6
ClCG06G016260 Citrullus lanatus HOM05D005938 ORTHO05D007654 8.1e-108 394.4 309 68.9
Sp5g29710 Schrenkiella parvula HOM05D005938 ORTHO05D007654 1.1e-107 394.0 307 66.8
ECA246G4427 Erigeron canadensis HOM05D005938 ORTHO05D007654 1.8e-107 393.3 318 63.2
Gorai.008G192300 Gossypium raimondii HOM05D005938 ORTHO05D007654 2.4e-107 392.9 307 67.4
AL2G34410 Arabidopsis lyrata HOM05D005938 ORTHO05D007654 3.1e-107 392.5 307 65.1
CARHR067810 Cardamine hirsuta HOM05D005938 ORTHO05D007654 1.2e-106 390.6 307 65.1
SalBow7G2600 Salvia bowleyana HOM05D005938 ORTHO05D007654 5.8e-106 388.3 318 61.9
HanXRQChr05g0158101 Helianthus annuus HOM05D005938 ORTHO05D007654 7.6e-106 387.9 319 63.9
FAN04G0099 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.9e-105 386.0 298 67.1
Carub.0002s2133 Capsella rubella HOM05D005938 ORTHO05D007654 4.9e-105 385.2 307 64.8
Thhalv10018904m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 1.1e-104 384.0 304 65.5
Sopen03g035260 Solanum pennellii HOM05D005938 ORTHO05D007654 1.1e-104 384.0 252 74.2
Lsat_1_v5_gn_5_19401 Lactuca sativa HOM05D005938 ORTHO05D007654 9.3e-104 380.9 318 62.9
BcaC08g46988 Brassica carinata HOM05D005938 ORTHO05D007654 2.1e-103 379.8 297 65.0
A07p40340 Brassica napus HOM05D005938 ORTHO05D007654 3.5e-103 379.0 307 64.5
Psat5g187160 Pisum sativum HOM05D005938 ORTHO05D007654 6.0e-103 378.3 277 70.4
ATR0564G381 Amborella trichopoda HOM05D005938 ORTHO05D007654 7.9e-103 377.9 288 65.3
Oeu016169.1 Olea europaea HOM05D005938 ORTHO05D007654 8.7e-102 374.4 265 70.9
Dinv38693 Davidia involucrata HOM05D005938 ORTHO05D007654 1.5e-101 373.6 255 74.5
BcaC08g46886 Brassica carinata HOM05D005938 ORTHO05D007654 1.9e-101 373.2 316 63.3
THA.LOC104812546 Tarenaya hassleriana HOM05D005938 ORTHO05D007654 4.8e-100 368.6 312 62.5
BraA07t31575Z Brassica rapa HOM05D005938 ORTHO05D007654 6.3e-100 368.2 327 60.9
DCAR_021525 Daucus carota HOM05D005938 ORTHO05D007654 6.3e-100 368.2 309 63.8
Aqoxy3G03351 Aquilegia oxysepala HOM05D005938 ORTHO05D007654 2.0e-98 363.2 271 69.4
unitig_744.g24387 Utricularia gibba HOM05D005938 ORTHO05D007654 1.7e-97 360.1 304 61.8
CDE02G0021 Ceratophyllum demersum HOM05D005938 ORTHO05D007654 2.2e-97 359.8 270 65.9
Manes.06G094000 Manihot esculenta HOM05D005938 ORTHO05D007654 1.4e-96 357.1 321 61.7
SGA_v2.0_scaffold114G31898 Striga asiatica HOM05D005938 ORTHO05D007654 1.8e-94 350.1 319 58.9
Aa31LG7G3570 Aethionema arabicum HOM05D005938 ORTHO05D007654 5.7e-93 345.1 301 59.8
SEGI_36934 Sequoiadendron giganteum HOM05D005938 ORTHO05D007654 1.3e-92 344.0 317 56.2
Os08g0171000 Oryza sativa ssp. japonica HOM05D005938 ORTHO05D007654 4.1e-91 339.0 264 61.4
BcaC08g46884 Brassica carinata HOM05D005938 ORTHO05D007654 4.6e-87 325.5 323 56.3
SHI04241 Sapria himalayana HOM05D005938 ORTHO05D007654 8.8e-86 321.2 357 52.9
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 1.8e-83 313.5 384 51.3
C06p48680 Brassica napus HOM05D005938 ORTHO05D007654 4.1e-83 312.4 259 63.7
Aa31LG4G4790 Aethionema arabicum HOM05D005938 ORTHO05D007654 6.9e-83 311.6 243 65.8
BolC6t39901H Brassica oleracea HOM05D005938 ORTHO05D007654 1.6e-79 300.4 266 61.7
Medtr0036s0320 Medicago truncatula HOM05D005938 ORTHO05D007654 8.8e-78 294.7 192 74.0
Mapoly0002s0073 Marchantia polymorpha HOM05D005938 ORTHO05D007654 2.0e-77 293.5 300 50.7
AT1G74530 Arabidopsis thaliana HOM05D005938 ORTHO05D007654 2.6e-77 293.1 246 63.0
CSS0050188 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.2e-74 284.3 211 71.6
VMungo1309G2195 Vigna mungo HOM05D005938 ORTHO05D007654 4.8e-68 262.3 196 67.9
Hma1.2p1_0735F.1_g210490 Hydrangea macrophylla HOM05D005938 ORTHO05D007654 6.3e-68 261.9 166 78.9
Pp3c17_15280 Physcomitrium patens HOM05D005938 ORTHO05D007654 1.9e-64 250.4 307 48.2
AagrBONN_evm.TU.Sc2ySwM_117.1670 Anthoceros agrestis HOM05D005938 ORTHO05D007654 3.2e-64 249.6 260 50.8
SMO270G0117 Selaginella moellendorffii HOM05D005938 ORTHO05D007654 1.2e-63 247.7 262 49.6
MBI02_g23681_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 5.2e-62 242.3 167 71.9
CBR_g66809 Chara braunii HOM05D005938 ORTHO05D007654 8.3e-60 235.0 269 46.5
Glyma.04G170700 Glycine max HOM05D005938 ORTHO05D007654 2.5e-56 223.4 161 73.3
FAN10G3346 Fragaria x ananassa HOM05D005938 ORTHO05D007654 4.2e-56 222.6 146 76.7
Zm00001eb415000 Zea mays HOM05D005938 ORTHO05D007654 3.8e-49 199.5 215 55.8
arahy.Tifrunner.gnm1.ann1.518D86 Arachis hypogaea HOM05D005938 ORTHO05D007654 1.4e-38 164.5 144 59.7
MCO16G029 Micromonas commoda HOM05D005938 ORTHO05D007654 7.0e-35 152.1 278 34.9
Medtr3g040450 Medicago truncatula HOM05D005938 ORTHO05D007654 1.2e-34 151.4 123 66.7
FAN18G0131 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.1e-32 144.8 155 55.5
MBI15_g27838_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 1.5e-32 144.4 166 51.2
VMungo0019G0001 Vigna mungo HOM05D005938 ORTHO05D007654 3.3e-32 143.3 191 50.3
QL07p001114 Quercus lobata HOM05D005938 ORTHO05D007654 5.2e-30 136.0 170 49.4
CSS0038577 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.7e-25 120.9 85 68.2
Prupe.5G190800 Prunus persica HOM05D005938 ORTHO05D007654 5.1e-25 119.4 85 65.9
FAN01G1759 Fragaria x ananassa HOM05D005938 ORTHO05D007654 6.6e-25 119.0 109 60.6
MD17G1094500 Malus domestica HOM05D005938 ORTHO05D007654 1.9e-24 117.5 78 76.9
Cre12.g513300 Chlamydomonas reinhardtii HOM05D005938 ORTHO05D007654 3.6e-23 113.2 205 35.1
PRCOL_00003564 Prasinoderma coloniale HOM05D005938 ORTHO05D007654 4.0e-22 109.8 286 34.3
QL02p071402 Quercus lobata HOM05D005938 ORTHO05D028155 7.6e-21 105.5 66 74.2
QL12p034017 Quercus lobata HOM05D000176 ORTHO05D000106 7.6e-21 105.5 68 72.1
Thhalv10000377m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 1.4e-06 58.2 91 41.8


User provided reference genes

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