Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 9.0e-142 506.9 256 100.0
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 4.5e-93 345.1 255 69.8
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 5.5e-91 338.2 255 68.6
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 5.5e-91 338.2 255 68.6
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 6.8e-89 331.3 254 66.1
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 4.4e-88 328.6 247 68.0
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 9.8e-88 327.4 254 65.4
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 1.7e-87 326.6 242 68.6
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 2.2e-87 326.2 213 75.1
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 2.2e-87 326.2 241 70.1
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 2.8e-87 325.9 256 66.8
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 3.7e-87 325.5 254 64.6
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 6.3e-87 324.7 240 70.8
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 6.3e-87 324.7 247 68.0
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 6.3e-87 324.7 213 77.5
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 6.3e-87 324.7 215 73.5
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.4e-86 323.6 213 77.9
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 1.4e-86 323.6 212 75.9
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 1.8e-86 323.2 213 74.2
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.4e-86 322.8 227 70.5
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 3.1e-86 322.4 257 66.5
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 4.1e-86 322.0 217 74.7
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 5.4e-86 321.6 209 77.5
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 5.4e-86 321.6 213 77.5
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 7.0e-86 321.2 204 79.4
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 9.2e-86 320.9 227 72.2
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 1.2e-85 320.5 213 77.0
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 1.2e-85 320.5 255 67.1
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 3.5e-85 318.9 228 70.6
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 4.5e-85 318.5 257 65.0
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 4.5e-85 318.5 256 64.1
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 7.8e-85 317.8 219 74.0
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 7.8e-85 317.8 213 76.1
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 7.8e-85 317.8 226 71.2
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 7.8e-85 317.8 255 66.7
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 2.3e-84 316.2 255 63.5
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 3.8e-84 315.5 243 68.7
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 3.8e-84 315.5 240 66.7
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 3.8e-84 315.5 220 70.5
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 5.0e-84 315.1 201 77.1
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 5.0e-84 315.1 257 64.2
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 6.6e-84 314.7 217 72.4
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 6.6e-84 314.7 217 72.4
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 8.6e-84 314.3 255 64.3
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 1.9e-83 313.2 201 76.1
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 2.5e-83 312.8 226 70.4
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 3.3e-83 312.4 255 64.3
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 3.3e-83 312.4 218 73.4
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 4.3e-83 312.0 243 67.1
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 7.3e-83 311.2 200 75.5
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 9.5e-83 310.8 238 66.8
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 1.2e-82 310.5 255 63.5
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 1.2e-82 310.5 217 71.4
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.6e-82 310.1 229 70.3
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 4.7e-82 308.5 250 64.8
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 6.1e-82 308.1 208 76.0
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 6.1e-82 308.1 216 71.3
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 6.1e-82 308.1 189 77.2
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 1.4e-81 307.0 220 70.9
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 1.4e-81 307.0 217 71.4
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 1.8e-81 306.6 256 63.3
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.8e-81 306.6 232 67.7
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 2.3e-81 306.2 214 71.5
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 4.0e-81 305.4 228 67.1
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 5.2e-81 305.1 208 74.0
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 8.9e-81 304.3 229 66.4
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 8.9e-81 304.3 201 73.6
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 1.2e-80 303.9 188 79.3
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 1.5e-80 303.5 216 71.8
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.5e-80 303.5 227 69.6
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 2.0e-80 303.1 188 78.7
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 2.0e-80 303.1 235 67.7
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 2.6e-80 302.8 273 61.5
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 3.4e-80 302.4 239 64.9
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 4.4e-80 302.0 208 73.6
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 5.8e-80 301.6 220 70.0
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 5.8e-80 301.6 188 78.2
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 7.5e-80 301.2 229 65.9
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 7.5e-80 301.2 229 65.9
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 7.5e-80 301.2 229 65.9
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 7.5e-80 301.2 237 65.8
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 1.3e-79 300.4 188 76.6
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 2.2e-79 299.7 255 62.0
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 2.9e-79 299.3 229 66.4
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 2.9e-79 299.3 229 66.4
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 4.9e-79 298.5 229 65.5
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 4.9e-79 298.5 229 65.5
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 6.4e-79 298.1 188 76.1
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 6.4e-79 298.1 232 65.1
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 1.4e-78 297.0 229 65.1
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 1.4e-78 297.0 195 75.9
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 1.4e-78 297.0 188 75.5
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 3.2e-78 295.8 179 82.1
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 3.2e-78 295.8 204 72.5
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 4.1e-78 295.4 236 66.5
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 4.1e-78 295.4 227 68.3
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 5.4e-78 295.0 290 56.6
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 7.0e-78 294.7 188 75.5
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 1.6e-77 293.5 191 75.4
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 2.7e-77 292.7 201 73.6
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 2.7e-77 292.7 188 76.1
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 3.5e-77 292.4 188 75.0
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 6.0e-77 291.6 184 77.2
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 7.8e-77 291.2 188 76.6
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.7e-76 290.0 254 60.6
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 9.5e-75 284.3 255 61.2
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 2.8e-74 282.7 230 64.8
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 3.6e-74 282.3 257 59.1
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 8.0e-74 281.2 288 54.5
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.1e-73 280.8 257 59.9
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.8e-73 280.0 221 66.1
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 2.3e-73 279.6 186 74.7
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 4.0e-73 278.9 183 74.9
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 4.4e-72 275.4 186 74.2
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 1.1e-70 270.8 187 71.1
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 5.6e-67 258.5 161 78.3
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 6.2e-66 255.0 237 58.6
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 1.1e-65 254.2 183 65.6
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 1.4e-65 253.8 186 67.7
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.7e-63 246.9 186 64.5
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 4.9e-63 245.4 186 64.5
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.4e-62 243.8 385 39.5
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 1.2e-61 240.7 216 63.4
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 1.7e-60 236.9 179 65.4
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 5.8e-56 221.9 188 62.8
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.9e-51 206.8 183 56.3
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 8.1e-50 201.4 221 50.7
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.4e-46 190.7 180 52.8
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.4e-46 190.7 180 52.8
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.1e-45 186.8 133 67.7
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 6.6e-44 181.8 249 40.6
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 8.7e-44 181.4 217 50.2
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.6e-42 177.2 212 42.9
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 5.3e-41 172.2 206 43.2
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.4e-38 163.3 99 81.8
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 3.2e-38 162.9 100 81.0
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 2.3e-36 156.8 118 67.8
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 2.3e-36 156.8 100 79.0
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 8.7e-36 154.8 97 80.4
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.7e-34 149.4 92 78.3
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 2.0e-32 143.7 127 59.8
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 7.6e-32 141.7 93 77.4
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 7.1e-30 135.2 102 72.5
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 1.6e-26 124.0 96 66.7
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 5.3e-25 119.0 120 54.2
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 1.3e-23 114.4 70 82.9
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 4.9e-23 112.5 68 77.9
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 4.6e-21 105.9 68 67.6
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 4.1e-17 92.8 134 44.8
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 3.4e-16 89.7 77 54.5
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 2.9e-15 86.7 68 69.1
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 2.4e-09 67.0 176 33.5


User provided reference genes

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