Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0008800 Simmondsia chinensis HOM05D007250 ORTHO05D009162 2.3e-63 245.4 120 100.0
Hund20100 Selenicereus undatus HOM05D007250 ORTHO05D009162 3.0e-23 112.1 78 64.1
GSVIVG01036780001 Vitis vinifera HOM05D007250 ORTHO05D009162 2.6e-22 109.0 80 62.5
Haze_07815 Corylus avellana HOM05D007250 ORTHO05D009162 1.7e-21 106.3 80 63.8
Thecc.07G179900 Theobroma cacao HOM05D007250 ORTHO05D009162 2.2e-21 105.9 78 62.8
Glyma.15G260800 Glycine max HOM05D007250 ORTHO05D009162 3.7e-21 105.1 84 59.5
Gohir.D13G127200 Gossypium hirsutum HOM05D007250 ORTHO05D009162 8.3e-21 104.0 78 61.5
Gorai.013G142400 Gossypium raimondii HOM05D007250 ORTHO05D009162 8.3e-21 104.0 78 61.5
QL04p088484 Quercus lobata HOM05D007250 ORTHO05D009162 1.1e-20 103.6 87 56.3
QL04p088943 Quercus lobata HOM05D007250 ORTHO05D009162 1.1e-20 103.6 87 56.3
Nn3g20174 Nelumbo nucifera HOM05D007250 ORTHO05D009162 1.8e-20 102.8 78 61.5
Phvul.005G050100 Phaseolus vulgaris HOM05D007250 ORTHO05D009162 2.4e-20 102.4 84 59.5
PSO541G5100 Papaver somniferum HOM05D007250 ORTHO05D009162 3.1e-20 102.1 78 62.8
RcHm_v2.0_Chr6g0272151 Rosa chinensis HOM05D007250 ORTHO05D009162 3.1e-20 102.1 94 53.2
Lj3g0020784 Lotus japonicus HOM05D007250 ORTHO05D009162 4.1e-20 101.7 96 52.1
CiPaw.11G061700 Carya illinoinensis HOM05D007250 ORTHO05D009162 5.3e-20 101.3 80 56.2
AUR62018167 Chenopodium quinoa HOM05D007250 ORTHO05D009162 5.3e-20 101.3 78 60.3
AUR62042431 Chenopodium quinoa HOM05D007250 ORTHO05D009162 5.3e-20 101.3 78 62.8
Ciclev10005586m.g Citrus clementina HOM05D007250 ORTHO05D009162 5.3e-20 101.3 80 57.5
Cpa.g.sc34.15 Carica papaya HOM05D007250 ORTHO05D009162 7.0e-20 100.9 97 51.5
CANSAT56G4154 Cannabis sativa HOM05D007250 ORTHO05D009162 1.2e-19 100.1 97 51.5
MBI18_g10574_MAGBIO Magnolia biondii HOM05D007250 ORTHO05D009162 1.2e-19 100.1 79 59.5
FAN20G1272 Fragaria x ananassa HOM05D007250 ORTHO05D009162 1.6e-19 99.8 94 52.1
COL.COLO4_32252 Corchorus olitorius HOM05D007250 ORTHO05D009162 2.0e-19 99.4 80 57.5
Potri.007G069400 Populus trichocarpa HOM05D007250 ORTHO05D009162 2.0e-19 99.4 80 57.5
TAR627G0140 Trochodendron aralioides HOM05D007250 ORTHO05D009162 2.7e-19 99.0 78 60.3
Actinidia12769 Actinidia chinensis HOM05D007250 ORTHO05D000003 3.5e-19 98.6 80 57.5
FvH4_2g12161 Fragaria vesca HOM05D007250 ORTHO05D009162 3.5e-19 98.6 80 58.8
PGR031G0704 Punica granatum HOM05D007250 ORTHO05D009162 3.5e-19 98.6 80 61.2
HPP92_000965 Vanilla planifolia HOM05D007250 ORTHO05D009162 3.5e-19 98.6 78 56.4
C08p44490 Brassica napus HOM05D007250 ORTHO05D009162 4.5e-19 98.2 82 56.1
TWI38G0063 Tripterygium wilfordii HOM05D007250 ORTHO05D009162 4.5e-19 98.2 80 55.0
arahy.Tifrunner.gnm1.ann1.QIZU11 Arachis hypogaea HOM05D007250 ORTHO05D009162 5.9e-19 97.8 96 52.1
ClCG02G018630 Citrullus lanatus HOM05D007250 ORTHO05D009162 5.9e-19 97.8 78 57.7
Carub.0001s1619 Capsella rubella HOM05D007250 ORTHO05D009162 1.0e-18 97.1 80 57.5
Hma1.2p1_0151F.1_g067310 Hydrangea macrophylla HOM05D007250 ORTHO05D009162 1.0e-18 97.1 80 60.0
Hma1.2p1_0151F.1_g067320 Hydrangea macrophylla HOM05D007250 ORTHO05D009162 1.0e-18 97.1 80 60.0
MD05G1040700 Malus domestica HOM05D007250 ORTHO05D009162 1.0e-18 97.1 84 56.0
Duzib213G0161 Durio zibethinus HOM05D007250 ORTHO05D009162 1.3e-18 96.7 80 57.5
Psat1g013800 Pisum sativum HOM05D007250 ORTHO05D009162 1.7e-18 96.3 84 56.0
Zm00001eb292510 Zea mays HOM05D007250 ORTHO05D009162 1.7e-18 96.3 95 51.6
Manes.06G175800 Manihot esculenta HOM05D007250 ORTHO05D009162 2.2e-18 95.9 80 55.0
Os05g0511700 Oryza sativa ssp. japonica HOM05D007250 ORTHO05D009162 2.2e-18 95.9 94 53.2
arahy.Tifrunner.gnm1.ann1.3NS56Y Arachis hypogaea HOM05D007250 ORTHO05D009162 2.9e-18 95.5 94 54.3
A09p60900 Brassica napus HOM05D007250 ORTHO05D009162 2.9e-18 95.5 82 56.1
BraA09t41463Z Brassica rapa HOM05D007250 ORTHO05D009162 2.9e-18 95.5 82 56.1
Thhalv10008448m.g Eutrema salsugineum HOM05D007250 ORTHO05D009162 2.9e-18 95.5 82 57.3
Sabra07G0056900 Salix brachista HOM05D007250 ORTHO05D009162 2.9e-18 95.5 80 53.8
Lsat_1_v5_gn_7_75520 Lactuca sativa HOM05D007250 ORTHO05D009162 3.8e-18 95.1 84 58.3
Medtr1g060720 Medicago truncatula HOM05D007250 ORTHO05D009162 5.0e-18 94.7 80 55.0
Sp1g14600 Schrenkiella parvula HOM05D007250 ORTHO05D009162 5.0e-18 94.7 82 56.1
Sed0012120 Sechium edule HOM05D007250 ORTHO05D009162 6.5e-18 94.4 78 52.6
CsaV3_6G013550 Cucumis sativus L. HOM05D007250 ORTHO05D009162 1.5e-17 93.2 78 55.1
Aa31LG7G990 Aethionema arabicum HOM05D007250 ORTHO05D009162 1.9e-17 92.8 82 54.9
Ca_03591_v3 Cicer arietinum L. HOM05D007250 ORTHO05D009162 1.9e-17 92.8 84 52.4
Prupe.8G055300 Prunus persica HOM05D007250 ORTHO05D009162 1.9e-17 92.8 78 55.1
Lalb_Chr25g0284601 Lupinus albus HOM05D007250 ORTHO05D009162 2.5e-17 92.4 80 55.0
HanXRQChr05g0160551 Helianthus annuus HOM05D007250 ORTHO05D009162 3.2e-17 92.0 98 46.9
vmacro11701 Vaccinium macrocarpon HOM05D007250 ORTHO05D009162 3.2e-17 92.0 80 56.2
Eucgr.F04459 Eucalyptus grandis HOM05D007250 ORTHO05D009162 7.2e-17 90.9 88 52.3
BolC8t51991H Brassica oleracea HOM05D007250 ORTHO05D009162 9.4e-17 90.5 92 51.1
CSS0017513 Camellia sinensis var. sinensis HOM05D007250 ORTHO05D009162 9.4e-17 90.5 80 55.0
CSS0024774 Camellia sinensis var. sinensis HOM05D007250 ORTHO05D009162 9.4e-17 90.5 80 55.0
Lj2A15T78 Lonicera japonica HOM05D007250 ORTHO05D009162 9.4e-17 90.5 84 53.6
MSTRG.16100 Avicennia marina HOM05D007250 ORTHO05D009162 1.2e-16 90.1 78 52.6
Dinv19589 Davidia involucrata HOM05D007250 ORTHO05D009162 1.2e-16 90.1 80 55.0
AL1G28580 Arabidopsis lyrata HOM05D007250 ORTHO05D009162 1.6e-16 89.7 80 55.0
CARHR016920 Cardamine hirsuta HOM05D007250 ORTHO05D009162 2.1e-16 89.4 82 53.7
Gohir.A13G123300 Gossypium hirsutum HOM05D007250 ORTHO05D009162 2.7e-16 89.0 92 53.3
Nitab4.5_0003777g0030 Nicotiana tabacum HOM05D007250 ORTHO05D009162 2.7e-16 89.0 78 53.8
AT1G16445 Arabidopsis thaliana HOM05D007250 ORTHO05D009162 3.6e-16 88.6 80 56.2
Peaxi162Scf00114g00116 Petunia axillaris HOM05D007250 ORTHO05D009162 6.1e-16 87.8 88 50.0
unitig_748.g7850 Utricularia gibba HOM05D007250 ORTHO05D001497 6.1e-16 87.8 80 52.5
Aqoxy6G01374 Aquilegia oxysepala HOM05D007250 ORTHO05D009162 8.0e-16 87.4 102 45.1
CDE01G0022 Ceratophyllum demersum HOM05D007250 ORTHO05D009162 8.0e-16 87.4 94 43.6
EL10Ac2g03263 Beta vulgaris HOM05D007250 ORTHO05D009162 1.0e-15 87.0 108 46.3
Pp3c16_19260 Physcomitrium patens HOM05D007250 ORTHO05D009162 1.4e-15 86.7 78 51.3
Oeu034977.1 Olea europaea HOM05D007250 ORTHO05D009162 2.3e-15 85.9 97 46.4
Sopen10g001520 Solanum pennellii HOM05D007250 ORTHO05D009162 3.0e-15 85.5 78 55.1
AagrBONN_evm.TU.Sc2ySwM_117.37 Anthoceros agrestis HOM05D007250 ORTHO05D009162 4.0e-15 85.1 80 48.8
ATR0165G048 Amborella trichopoda HOM05D007250 ORTHO05D009162 6.8e-15 84.3 94 45.7
CAN.G492.76 Capsicum annuum HOM05D007250 ORTHO05D009162 6.8e-15 84.3 78 53.8
Solyc10g005540.4 Solanum lycopersicum HOM05D007250 ORTHO05D009162 8.8e-15 84.0 78 53.8
PGSC0003DMG400011276 Solanum tuberosum HOM05D007250 ORTHO05D009162 1.2e-14 83.6 78 53.8
Nitab4.5_0008957g0010 Nicotiana tabacum HOM05D007250 ORTHO05D009162 1.5e-14 83.2 94 45.7
SGA_v2.0_scaffold7G03608 Striga asiatica HOM05D001395 ORTHO05D002039 4.4e-14 81.6 72 52.8
FAN24G3506 Fragaria x ananassa HOM05D007250 ORTHO05D009162 1.3e-13 80.1 64 57.8
QL03p068942 Quercus lobata HOM05D007250 ORTHO05D009162 1.3e-13 80.1 91 49.5
SMO141G0022 Selaginella moellendorffii HOM05D007250 ORTHO05D009162 2.2e-13 79.3 85 48.2
Mapoly0102s0005 Marchantia polymorpha HOM05D007250 ORTHO05D009162 3.7e-13 78.6 79 45.6
Hma1.2p1_0616F.1_g189960 Hydrangea macrophylla HOM05D007250 ORTHO05D009162 4.8e-13 78.2 75 54.7
Rhsim06G0242100 Rhododendron simsii HOM05D007250 ORTHO05D009162 2.4e-12 75.9 64 57.8
Atru.chr1.107 Acer truncatum HOM05D007250 ORTHO05D009162 1.3e-10 70.1 83 47.0
Migut.M01529 Erythranthe guttata HOM05D007250 ORTHO05D009162 1.7e-10 69.7 49 61.2
Mapoly0062s0100 Marchantia polymorpha HOM05D007250 ORTHO05D009162 2.6e-06 55.8 54 46.3


User provided reference genes

Program Settings