Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 3.4e-275 951.0 475 100.0
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 7.0e-140 501.5 453 57.6
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 1.6e-139 500.4 460 57.6
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 7.8e-139 498.0 449 58.8
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 6.8e-135 485.0 456 58.1
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 7.0e-132 474.9 444 54.3
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 2.0e-131 473.4 461 54.7
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 1.0e-130 471.1 446 55.8
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 1.7e-130 470.3 398 58.0
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 1.8e-127 460.3 493 52.7
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 3.2e-124 449.5 491 49.5
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 5.4e-124 448.7 474 53.4
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 3.5e-123 446.0 396 57.8
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 4.6e-123 445.7 493 48.7
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 1.3e-122 444.1 488 49.4
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 6.6e-122 441.8 493 47.1
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 8.6e-122 441.4 495 48.5
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 8.6e-122 441.4 454 53.3
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 8.6e-122 441.4 457 54.3
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 1.9e-121 440.3 488 49.0
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 1.9e-121 440.3 454 53.5
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 2.8e-120 436.4 464 52.4
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 4.7e-120 435.6 468 51.9
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 6.2e-120 435.3 456 51.8
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 1.8e-119 433.7 482 49.0
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 1.8e-119 433.7 458 52.0
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 1.8e-119 433.7 495 48.1
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 1.8e-119 433.7 493 48.5
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 1.5e-118 430.6 456 51.5
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 2.0e-118 430.3 457 51.6
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 2.6e-118 429.9 465 50.8
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 4.4e-118 429.1 492 49.8
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 5.8e-118 428.7 465 50.5
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 9.9e-118 427.9 465 50.3
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 1.7e-117 427.2 455 51.2
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 2.2e-117 426.8 494 47.8
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 4.9e-117 425.6 467 53.1
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 4.9e-117 425.6 456 51.5
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 1.4e-116 424.1 454 51.8
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 3.2e-116 422.9 452 52.2
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 4.1e-116 422.5 455 52.7
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 7.1e-116 421.8 452 50.7
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 9.2e-116 421.4 451 52.1
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 1.2e-115 421.0 455 52.7
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 1.6e-115 420.6 455 50.5
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 1.6e-115 420.6 455 51.6
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 2.7e-115 419.9 450 48.9
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 3.5e-115 419.5 456 50.4
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 1.3e-114 417.5 456 51.3
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 1.3e-114 417.5 455 49.5
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 9.6e-113 411.4 456 49.8
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 1.2e-112 411.0 452 49.3
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 8.1e-112 408.3 468 48.5
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 1.4e-111 407.5 460 50.2
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 2.4e-111 406.8 455 49.5
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 4.0e-111 406.0 467 49.0
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 7.6e-110 401.7 464 51.7
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 9.9e-110 401.4 409 54.3
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 3.8e-109 399.4 473 46.5
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 1.1e-108 397.9 453 48.6
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 5.4e-108 395.6 461 49.5
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 1.6e-107 394.0 450 49.8
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 2.1e-107 393.7 465 48.0
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 6.0e-107 392.1 461 47.5
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 1.3e-106 391.0 459 49.0
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 1.3e-106 391.0 455 47.5
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 2.3e-106 390.2 456 48.5
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 3.9e-106 389.4 453 49.7
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 3.3e-105 386.3 458 47.4
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 3.3e-105 386.3 481 45.5
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 4.3e-105 386.0 462 48.5
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 1.1e-103 381.3 525 45.5
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 4.0e-103 379.4 415 48.9
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 9.0e-103 378.3 458 49.8
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 1.5e-102 377.5 459 46.6
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 4.9e-101 372.5 476 46.8
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 1.9e-100 370.5 454 46.9
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 1.2e-99 367.9 460 46.1
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 4.3e-97 359.4 458 45.4
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 2.1e-96 357.1 459 45.5
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 1.1e-95 354.8 457 44.9
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 5.3e-95 352.4 456 44.5
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 2.2e-93 347.1 389 49.6
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 2.4e-92 343.6 406 49.5
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 3.2e-92 343.2 448 47.1
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 3.3e-89 333.2 454 44.5
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 7.4e-89 332.0 340 53.5
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 1.1e-87 328.2 378 50.3
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 2.9e-85 320.1 448 44.2
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 6.7e-82 308.9 452 40.9
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 3.9e-74 283.1 452 39.4
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 1.3e-72 278.1 451 38.8
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 2.8e-72 276.9 269 52.0
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.9e-68 264.2 341 45.2
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 7.9e-67 258.8 453 39.3
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 1.9e-60 237.7 197 60.4
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 1.2e-59 235.0 192 59.9
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 2.1e-59 234.2 193 61.7
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 1.4e-58 231.5 318 45.6
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 5.3e-55 219.5 288 44.4
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 2.6e-54 217.2 215 51.6
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 1.0e-53 215.3 530 31.3
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 2.2e-53 214.2 250 48.0
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 4.4e-49 199.9 493 30.2
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 2.2e-48 197.6 498 28.9
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.1e-44 185.3 209 49.3
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 1.5e-44 184.9 460 31.1
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 3.1e-39 167.2 109 73.4
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.3e-34 151.0 109 66.1
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 1.2e-27 128.6 162 39.5
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 4.7e-27 126.7 141 47.5
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 6.1e-27 126.3 125 53.6
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 6.2e-19 99.8 56 82.1
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 1.9e-15 88.2 71 64.8
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 1.2e-14 85.5 59 62.7
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 1.0e-13 82.4 104 46.2
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 1.3e-13 82.0 144 31.9
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 3.0e-13 80.9 99 46.5
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 3.6e-11 73.9 54 64.8
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 1.3e-08 65.5 48 64.6
Zm00001eb135490 Zea mays HOM05D006388 ORTHO05D008026 6.0e-06 56.6 49 59.2


User provided reference genes

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