Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 1.0e-51 206.5 104 100.0
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.6e-36 156.0 102 75.5
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 3.7e-33 144.8 104 63.5
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.4e-32 142.9 104 66.3
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.6e-31 138.7 102 67.6
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 2.9e-30 135.2 96 68.8
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 4.9e-30 134.4 96 67.7
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 6.5e-30 134.0 102 64.7
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 6.5e-30 134.0 94 67.0
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 8.4e-30 133.7 97 66.0
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 1.1e-29 133.3 88 69.3
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.1e-29 133.3 97 64.9
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 2.5e-29 132.1 101 63.4
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 2.5e-29 132.1 101 63.4
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 2.5e-29 132.1 96 62.5
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 2.5e-29 132.1 96 63.5
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 4.2e-29 131.3 98 64.3
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 5.5e-29 131.0 101 63.4
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 5.5e-29 131.0 94 64.9
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 5.5e-29 131.0 96 65.6
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 7.1e-29 130.6 96 64.6
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 7.1e-29 130.6 97 63.9
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 9.3e-29 130.2 100 62.0
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 9.3e-29 130.2 96 63.5
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.2e-28 129.8 97 61.9
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 1.6e-28 129.4 99 62.6
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 1.6e-28 129.4 96 65.6
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 1.6e-28 129.4 98 62.2
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 2.1e-28 129.0 88 68.2
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 2.1e-28 129.0 96 62.5
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 2.1e-28 129.0 94 66.0
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.1e-28 129.0 99 60.6
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.7e-28 128.6 96 61.5
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 3.5e-28 128.3 94 66.0
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 4.6e-28 127.9 98 62.2
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 4.6e-28 127.9 96 61.5
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 4.6e-28 127.9 96 61.5
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 6.0e-28 127.5 107 62.6
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 6.0e-28 127.5 92 63.0
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 6.0e-28 127.5 86 68.6
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 6.0e-28 127.5 96 62.5
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 1.0e-27 126.7 98 63.3
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.3e-27 126.3 95 63.2
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 1.3e-27 126.3 95 65.3
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 1.8e-27 125.9 98 62.2
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 1.8e-27 125.9 86 69.8
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.8e-27 125.9 86 65.1
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 2.3e-27 125.6 96 63.5
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 2.3e-27 125.6 85 69.4
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 3.0e-27 125.2 98 60.2
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 3.0e-27 125.2 101 62.4
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 3.9e-27 124.8 96 61.5
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 3.9e-27 124.8 96 62.5
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.9e-27 124.8 96 62.5
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.9e-27 124.8 96 62.5
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 3.9e-27 124.8 95 64.2
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 5.1e-27 124.4 101 61.4
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 5.1e-27 124.4 98 61.2
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 6.7e-27 124.0 99 59.6
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 6.7e-27 124.0 96 62.5
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 6.7e-27 124.0 86 64.0
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 8.7e-27 123.6 96 62.5
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 8.7e-27 123.6 96 62.5
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 1.1e-26 123.2 86 65.1
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 1.1e-26 123.2 86 65.1
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.5e-26 122.9 96 60.4
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 2.5e-26 122.1 87 63.2
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 3.3e-26 121.7 96 60.4
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 3.3e-26 121.7 89 62.9
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 3.3e-26 121.7 97 60.8
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 5.7e-26 120.9 84 65.5
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 5.7e-26 120.9 96 59.4
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 5.7e-26 120.9 96 58.3
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 5.7e-26 120.9 96 60.4
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 7.4e-26 120.6 84 65.5
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 9.6e-26 120.2 84 64.3
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 9.6e-26 120.2 97 60.8
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 9.6e-26 120.2 96 59.4
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.3e-25 119.8 93 60.2
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.6e-25 119.4 93 61.3
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 1.6e-25 119.4 99 61.6
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 1.6e-25 119.4 99 54.5
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 1.6e-25 119.4 97 59.8
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 2.1e-25 119.0 84 65.5
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 2.1e-25 119.0 84 63.1
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 2.1e-25 119.0 120 50.8
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 2.8e-25 118.6 119 52.9
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 4.8e-25 117.9 93 58.1
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 4.8e-25 117.9 93 58.1
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 4.8e-25 117.9 84 63.1
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 6.2e-25 117.5 84 63.1
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 6.2e-25 117.5 84 63.1
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 6.2e-25 117.5 84 63.1
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 8.2e-25 117.1 99 54.5
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 8.2e-25 117.1 103 55.3
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 8.2e-25 117.1 86 66.3
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.1e-24 116.7 103 57.3
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 1.1e-24 116.7 96 59.4
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 1.1e-24 116.7 96 59.4
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 1.8e-24 115.9 81 64.2
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 2.4e-24 115.5 94 60.6
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 3.1e-24 115.2 84 61.9
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 4.1e-24 114.8 107 57.0
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 4.1e-24 114.8 86 60.5
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 6.9e-24 114.0 87 63.2
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 6.9e-24 114.0 83 67.5
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 1.2e-23 113.2 97 59.8
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.2e-23 113.2 96 60.4
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 2.0e-23 112.5 86 57.0
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 2.6e-23 112.1 84 61.9
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 2.6e-23 112.1 99 59.6
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 2.6e-23 112.1 73 71.2
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.6e-23 112.1 96 59.4
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 3.4e-23 111.7 84 61.9
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 3.4e-23 111.7 84 61.9
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 4.5e-23 111.3 103 59.2
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 4.5e-23 111.3 82 63.4
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 5.8e-23 110.9 99 59.6
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 5.8e-23 110.9 103 56.3
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 1.0e-22 110.2 88 61.4
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 1.3e-22 109.8 84 60.7
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 1.7e-22 109.4 84 60.7
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 4.2e-21 104.8 84 58.3
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 2.1e-20 102.4 69 79.7
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 3.5e-20 101.7 97 55.7
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 1.0e-19 100.1 97 53.6
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 1.3e-19 99.8 96 58.3
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 5.1e-19 97.8 95 52.6
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.5e-18 96.3 95 53.7
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 1.5e-18 96.3 103 47.6
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 7.4e-18 94.0 67 70.1
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 8.2e-17 90.5 73 65.8
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 8.2e-17 90.5 67 64.2
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 1.8e-16 89.4 67 64.2
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 5.3e-16 87.8 65 67.7
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 1.5e-15 86.3 57 66.7
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 2.0e-15 85.9 83 50.6
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 5.9e-15 84.3 89 48.3
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.2e-14 82.4 63 66.7
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 2.5e-13 79.0 64 64.1
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 1.2e-12 76.6 66 63.6
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 2.1e-12 75.9 99 42.4
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.5e-10 69.7 61 60.7
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 5.7e-10 67.8 58 62.1
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 1.7e-09 66.2 69 56.5
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 2.8e-09 65.5 70 41.4


User provided reference genes

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