Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0007140 Simmondsia chinensis HOM05D003224 ORTHO05D003681 4.1e-46 187.6 86 100.0
Atru.chr8.1629 Acer truncatum HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Actinidia09131 Actinidia chinensis HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Aqoxy1G02569 Aquilegia oxysepala HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
arahy.Tifrunner.gnm1.ann1.6FX8FC Arachis hypogaea HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
arahy.Tifrunner.gnm1.ann1.75KP2R Arachis hypogaea HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
arahy.Tifrunner.gnm1.ann1.QQ9X2Y Arachis hypogaea HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
arahy.Tifrunner.gnm1.ann1.WI0P5A Arachis hypogaea HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
CSS0016866 Camellia sinensis var. sinensis HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
CSS0032291 Camellia sinensis var. sinensis HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
CSS0034364 Camellia sinensis var. sinensis HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Cpa.g.sc132.30 Carica papaya HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Ca_01675_v3 Cicer arietinum L. HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Cc01_g02050 Coffea canephora HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
COL.COLO4_30170 Corchorus olitorius HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Dinv29428 Davidia involucrata HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
ECA234G0211 Erigeron canadensis HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
FvH4_3g24270 Fragaria vesca HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
FAN11G3640 Fragaria x ananassa HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
FAN16G0376 Fragaria x ananassa HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
FAN21G1049 Fragaria x ananassa HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
FAN25G2404 Fragaria x ananassa HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Glyma.13G318800 Glycine max HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Gohir.A10G110400 Gossypium hirsutum HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Gohir.D03G040701 Gossypium hirsutum HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Gohir.D03G062600 Gossypium hirsutum HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Gohir.D09G037600 Gossypium hirsutum HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Gohir.D10G156100 Gossypium hirsutum HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Gohir.D11G116600 Gossypium hirsutum HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Gorai.011G175400 Gossypium raimondii HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
HanXRQChr12g0355081 Helianthus annuus HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Hma1.2p1_0564F.1_g179300 Hydrangea macrophylla HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Lj3A831T82 Lonicera japonica HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Lj1g0018231 Lotus japonicus HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Lj1g0022799 Lotus japonicus HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Lalb_Chr01g0004761 Lupinus albus HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Lalb_Chr03g0027931 Lupinus albus HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
MD03G1135200 Malus domestica HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
MD11G1157900 Malus domestica HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Medtr4g055270 Medicago truncatula HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Nn2g14011 Nelumbo nucifera HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Os07g0292800 Oryza sativa ssp. japonica HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Phvul.005G126800 Phaseolus vulgaris HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Psat5g255600 Pisum sativum HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Psat7g143080 Pisum sativum HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Potri.004G187800 Populus trichocarpa HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Potri.009G148500 Populus trichocarpa HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Prupe.5G055500 Prunus persica HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Prupe.6G119600 Prunus persica HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Rhsim01G0207800 Rhododendron simsii HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Sabra04G0126700 Salix brachista HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Sed0008168 Sechium edule HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Sed0018327 Sechium edule HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Hund00769 Selenicereus undatus HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Sc15g0001310 Simmondsia chinensis HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Solyc10g078660.2 Solanum lycopersicum HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Sopen10g029270 Solanum pennellii HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Thecc.03G020600 Theobroma cacao HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
TPR.G15580 Trifolium pratense HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
TPR.G32368 Trifolium pratense HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
TWI31G0141 Tripterygium wilfordii HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
TWI79G0348 Tripterygium wilfordii HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
vmacro07164 Vaccinium macrocarpon HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
vmacro14357 Vaccinium macrocarpon HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
VMungo1080G1617 Vigna mungo HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
GSVIVG01031394001 Vitis vinifera HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
GSVIVG01033788001 Vitis vinifera HOM05D003224 ORTHO05D003681 8.0e-18 93.6 44 93.2
Atru.chr2.3627 Acer truncatum HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
AT2G44860 Arabidopsis thaliana HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
MSTRG.1140 Avicennia marina HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
ClCG05G018990 Citrullus lanatus HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
Cc06_g02290 Coffea canephora HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
Duzib205G1170 Durio zibethinus HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
Migut.C00487 Erythranthe guttata HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
Eucgr.B03893 Eucalyptus grandis HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
Eucgr.J02686 Eucalyptus grandis HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
Glyma.10G080050 Glycine max HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
Glyma.12G085800 Glycine max HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
Glyma.12G182000 Glycine max HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
Manes.04G049800 Manihot esculenta HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
Manes.11G157600 Manihot esculenta HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
Nitab4.5_0000698g0010 Nicotiana tabacum HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
Oeu021480.1 Olea europaea HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
Peaxi162Scf00544g00313 Petunia axillaris HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
Pp3c1_18050 Physcomitrium patens HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
Pp3c2_19310 Physcomitrium patens HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
PGR004G2392 Punica granatum HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
PGR102G2272 Punica granatum HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
SGA_v2.0_scaffold236G43742 Striga asiatica HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
SGA_v2.0_scaffold275G46545 Striga asiatica HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
THA.LOC104800554 Tarenaya hassleriana HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
THA.LOC104815730 Tarenaya hassleriana HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
HPP92_003875 Vanilla planifolia HOM05D003224 ORTHO05D003681 1.0e-17 93.2 44 90.9
Zm00001eb328950 Zea mays HOM05D003224 ORTHO05D003681 1.4e-17 92.8 44 88.6
CANSAT80G0126 Cannabis sativa HOM05D003224 ORTHO05D003681 1.8e-17 92.4 44 90.9
Cfa010607 Carpinus fangiana HOM05D003224 ORTHO05D003681 1.8e-17 92.4 44 88.6
CiPaw.14G002000 Carya illinoinensis HOM05D003224 ORTHO05D003681 1.8e-17 92.4 44 88.6
CDE11G0136 Ceratophyllum demersum HOM05D003224 ORTHO05D003681 1.8e-17 92.4 44 88.6
Haze_03532 Corylus avellana HOM05D003224 ORTHO05D003681 1.8e-17 92.4 44 88.6
Haze_03537 Corylus avellana HOM05D003224 ORTHO05D003681 1.8e-17 92.4 44 88.6
Nitab4.5_0000571g0160 Nicotiana tabacum HOM05D003224 ORTHO05D003681 1.8e-17 92.4 44 90.9
Nitab4.5_0001364g0060 Nicotiana tabacum HOM05D003224 ORTHO05D003681 1.8e-17 92.4 44 90.9
Peaxi162Scf00008g04610 Petunia axillaris HOM05D003224 ORTHO05D003681 1.8e-17 92.4 44 90.9
QL04p008860 Quercus lobata HOM05D003224 ORTHO05D003681 1.8e-17 92.4 44 88.6
QL08p049201 Quercus lobata HOM05D003224 ORTHO05D003681 1.8e-17 92.4 44 88.6
RcHm_v2.0_Chr5g0043411 Rosa chinensis HOM05D003224 ORTHO05D003681 1.8e-17 92.4 44 90.9
TAR633G2553 Trochodendron aralioides HOM05D003224 ORTHO05D003681 1.8e-17 92.4 44 90.9
TAR636G0467 Trochodendron aralioides HOM05D003224 ORTHO05D003681 1.8e-17 92.4 44 90.9
CSS0038192 Camellia sinensis var. sinensis HOM05D003224 ORTHO05D003681 2.3e-17 92.0 44 90.9
Glyma.11G188900 Glycine max HOM05D003224 ORTHO05D003681 2.3e-17 92.0 44 90.9
Gorai.008G090700 Gossypium raimondii HOM05D003224 ORTHO05D003681 2.3e-17 92.0 44 90.9
Nn1g02067 Nelumbo nucifera HOM05D003224 ORTHO05D003681 2.3e-17 92.0 44 88.6
SalBow7G4047 Salvia bowleyana HOM05D003224 ORTHO05D003681 2.3e-17 92.0 44 88.6
SalBow7G4438 Salvia bowleyana HOM05D003224 ORTHO05D003681 2.3e-17 92.0 44 88.6
unitig_46.g18040 Utricularia gibba HOM05D003224 ORTHO05D003681 2.3e-17 92.0 44 88.6
Gohir.A02G052500 Gossypium hirsutum HOM05D003224 ORTHO05D003681 3.0e-17 91.7 44 90.9
Gohir.A02G141700 Gossypium hirsutum HOM05D003224 ORTHO05D003681 3.0e-17 91.7 44 90.9
Gohir.A08G122200 Gossypium hirsutum HOM05D003224 ORTHO05D003681 3.0e-17 91.7 44 90.9
Gohir.A09G060700 Gossypium hirsutum HOM05D003224 ORTHO05D003681 3.0e-17 91.7 44 90.9
Mapoly1100s0002 Marchantia polymorpha HOM05D003224 ORTHO05D003681 3.0e-17 91.7 44 86.4
Nitab4.5_0000358g0140 Nicotiana tabacum HOM05D003224 ORTHO05D003681 3.0e-17 91.7 44 88.6
SEGI_07759 Sequoiadendron giganteum HOM05D003224 ORTHO05D003681 3.0e-17 91.7 44 86.4
PSO063G2033 Papaver somniferum HOM05D003224 ORTHO05D003681 4.0e-17 91.3 44 88.6
Cfa004971 Carpinus fangiana HOM05D003224 ORTHO05D003681 5.2e-17 90.9 44 88.6
Haze_02423 Corylus avellana HOM05D003224 ORTHO05D003681 5.2e-17 90.9 44 88.6
MBI14_g24482_MAGBIO Magnolia biondii HOM05D003224 ORTHO05D003681 5.2e-17 90.9 44 88.6
PSO541G5774 Papaver somniferum HOM05D003224 ORTHO05D003681 5.2e-17 90.9 44 88.6
PSO675G5292 Papaver somniferum HOM05D003224 ORTHO05D003681 5.2e-17 90.9 44 88.6
Sc12g0009430 Simmondsia chinensis HOM05D003224 ORTHO05D003681 5.2e-17 90.9 44 88.6
Aa31LG9G1120 Aethionema arabicum HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 88.6
AL4G43960 Arabidopsis lyrata HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 88.6
BcaB02g07946 Brassica carinata HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 88.6
BcaB06g27515 Brassica carinata HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 88.6
BcaC08g44459 Brassica carinata HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 88.6
A04p13510 Brassica napus HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 88.6
A07p20290 Brassica napus HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 88.6
C04p47300 Brassica napus HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 88.6
C06p19080 Brassica napus HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 88.6
BolC4t26330H Brassica oleracea HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 88.6
BolC6t37109H Brassica oleracea HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 88.6
BraA04t17010Z Brassica rapa HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 88.6
BraA07t29730Z Brassica rapa HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 88.6
Carub.0004s2745 Capsella rubella HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 88.6
CiPaw.13G007400 Carya illinoinensis HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 86.4
Ca_19375_v3 Cicer arietinum L. HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 90.9
Gohir.A06G167400 Gossypium hirsutum HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 90.9
Sp7g01420 Schrenkiella parvula HOM05D003224 ORTHO05D003681 6.8e-17 90.5 44 88.6
AUR62023926 Chenopodium quinoa HOM05D003224 ORTHO05D003681 8.8e-17 90.1 44 86.4
AUR62038313 Chenopodium quinoa HOM05D003224 ORTHO05D003681 8.8e-17 90.1 44 86.4
Duzib192G0688 Durio zibethinus HOM05D003224 ORTHO05D003681 8.8e-17 90.1 44 86.4
CBR_g11045 Chara braunii HOM05D003224 ORTHO05D003681 1.2e-16 89.7 44 88.6
SMO169G0081 Selaginella moellendorffii HOM05D003224 ORTHO05D003681 2.0e-16 89.0 44 84.1
MELO3C003834.2 Cucumis melo HOM05D003224 ORTHO05D003681 2.6e-16 88.6 44 86.4
MELO3C019857.2 Cucumis melo HOM05D003224 ORTHO05D003681 2.6e-16 88.6 44 86.4
CsaV3_2G032810 Cucumis sativus L. HOM05D003224 ORTHO05D003681 2.6e-16 88.6 44 86.4
CsaV3_3G045120 Cucumis sativus L. HOM05D003224 ORTHO05D003681 2.6e-16 88.6 44 86.4
Medtr2g084925 Medicago truncatula HOM05D003224 ORTHO05D003681 2.6e-16 88.6 44 88.6
MCO01G240 Micromonas commoda HOM05D003224 ORTHO05D003681 2.6e-16 88.6 44 84.1
Ah.01g004560 Amaranthus hybridus HOM05D003224 ORTHO05D003681 3.4e-16 88.2 44 86.4
ATR0332G076 Amborella trichopoda HOM05D003224 ORTHO05D003681 4.4e-16 87.8 44 81.8
ATR0739G083 Amborella trichopoda HOM05D003224 ORTHO05D003681 4.4e-16 87.8 44 81.8
arahy.Tifrunner.gnm1.ann1.QT0JFD Arachis hypogaea HOM05D003224 ORTHO05D003681 4.4e-16 87.8 42 92.9
CARHR140120 Cardamine hirsuta HOM05D003224 ORTHO05D003681 5.7e-16 87.4 44 84.1
EL10Ac8g20618 Beta vulgaris HOM05D003224 ORTHO05D003681 7.5e-16 87.0 44 84.1
Ah.01g016860 Amaranthus hybridus HOM05D003224 ORTHO05D003681 2.2e-15 85.5 44 81.8
Cre07.g325712 Chlamydomonas reinhardtii HOM05D003224 ORTHO05D003681 6.3e-15 84.0 44 77.3
ClCG10G019300 Citrullus lanatus HOM05D003224 ORTHO05D003681 4.1e-14 81.3 64 62.5
PRCOL_00003884 Prasinoderma coloniale HOM05D003224 ORTHO05D003681 1.2e-13 79.7 44 75.0
Sabra09G0117000 Salix brachista HOM05D003224 ORTHO05D003681 1.7e-12 75.9 79 51.9
arahy.Tifrunner.gnm1.ann1.07WNVU Arachis hypogaea HOM05D003224 ORTHO05D003681 6.6e-12 73.9 54 68.5
Haze_27612 Corylus avellana HOM05D003224 ORTHO05D003681 1.1e-11 73.2 44 68.2
Haze_03541 Corylus avellana HOM05D003224 ORTHO05D003681 4.2e-11 71.2 51 62.7
FAN25G0419 Fragaria x ananassa HOM05D003224 ORTHO05D003681 8.0e-10 67.0 59 61.0
CDE02G1831 Ceratophyllum demersum HOM05D003224 ORTHO05D003681 4.4e-08 61.2 28 96.4
HPP92_003890 Vanilla planifolia HOM05D003224 ORTHO05D003681 4.4e-08 61.2 28 96.4
Ciclev10022847m.g Citrus clementina HOM05D003224 ORTHO05D003681 9.8e-08 60.1 73 42.5
Dinv21252 Davidia involucrata HOM05D003224 ORTHO05D008988 9.8e-08 60.1 28 92.9
Lj3g0020534 Lotus japonicus HOM05D003224 ORTHO05D003681 8.3e-07 57.0 44 61.4
BcaC07g40366 Brassica carinata HOM05D017174 ORTHO05D023958 5.4e-06 54.3 35 68.6


User provided reference genes

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