Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0007050 Simmondsia chinensis HOM05D006938 ORTHO05D008600 6.7e-75 283.9 138 100.0
Sc20g0002200 Simmondsia chinensis HOM05D006938 ORTHO05D008600 1.5e-26 123.2 67 94.0
Sc10g0007070 Simmondsia chinensis HOM05D006938 ORTHO05D008600 2.0e-26 122.9 67 94.0
Lj5g0002504 Lotus japonicus HOM05D006938 ORTHO05D008600 7.8e-15 84.3 50 76.0
vmacro22268 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 1.3e-14 83.6 60 65.0
vmacro22787 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 1.3e-14 83.6 60 65.0
Lalb_Chr03g0035761 Lupinus albus HOM05D006938 ORTHO05D008600 3.0e-14 82.4 47 78.7
arahy.Tifrunner.gnm1.ann1.ZPRB1V Arachis hypogaea HOM05D006938 ORTHO05D008600 3.9e-14 82.0 110 40.9
Dinv17599 Davidia involucrata HOM05D006938 ORTHO05D008600 3.9e-14 82.0 70 58.6
Medtr1g097270 Medicago truncatula HOM05D006938 ORTHO05D008600 5.0e-14 81.6 50 72.0
Sabra02G0050200 Salix brachista HOM05D006938 ORTHO05D008600 5.0e-14 81.6 102 46.1
Oeu024662.1 Olea europaea HOM05D006938 ORTHO05D008600 6.6e-14 81.3 64 60.9
Ah.01g012920 Amaranthus hybridus HOM05D006938 ORTHO05D008600 8.6e-14 80.9 63 63.5
Glyma.20G172300 Glycine max HOM05D006938 ORTHO05D008600 8.6e-14 80.9 105 46.7
Phvul.007G086000 Phaseolus vulgaris HOM05D006938 ORTHO05D008600 8.6e-14 80.9 105 44.8
TAR629G2816 Trochodendron aralioides HOM05D006938 ORTHO05D008600 8.6e-14 80.9 60 63.3
Eucgr.G00991 Eucalyptus grandis HOM05D006938 ORTHO05D008600 3.3e-13 79.0 69 50.7
TPR.G23154 Trifolium pratense HOM05D006938 ORTHO05D008600 4.3e-13 78.6 50 70.0
Gohir.D11G002100 Gossypium hirsutum HOM05D006938 ORTHO05D008600 5.6e-13 78.2 97 45.4
Potri.002G062100 Populus trichocarpa HOM05D006938 ORTHO05D008600 5.6e-13 78.2 102 44.1
Glyma.10G219400 Glycine max HOM05D006938 ORTHO05D008600 9.5e-13 77.4 110 42.7
Gorai.007G003100 Gossypium raimondii HOM05D006938 ORTHO05D008600 9.5e-13 77.4 97 45.4
ATR0618G369 Amborella trichopoda HOM05D006938 ORTHO05D008600 1.2e-12 77.0 44 77.3
CANSAT64G2234 Cannabis sativa HOM05D006938 ORTHO05D008600 1.2e-12 77.0 76 52.6
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 1.2e-12 77.0 58 62.1
Hund24283 Selenicereus undatus HOM05D006938 ORTHO05D008600 1.2e-12 77.0 64 60.9
Ca_10639_v3 Cicer arietinum L. HOM05D006938 ORTHO05D008600 1.6e-12 76.6 45 75.6
Gohir.A11G002500 Gossypium hirsutum HOM05D006938 ORTHO05D008600 1.6e-12 76.6 97 45.4
QL03p043666 Quercus lobata HOM05D006938 ORTHO05D008600 1.6e-12 76.6 61 62.3
PSO017G4971 Papaver somniferum HOM05D006938 ORTHO05D008600 2.1e-12 76.3 45 77.8
PSO478G3769 Papaver somniferum HOM05D006938 ORTHO05D008600 2.1e-12 76.3 45 77.8
Atru.chr11.1233 Acer truncatum HOM05D006938 ORTHO05D008600 3.6e-12 75.5 98 43.9
Atru.chr11.1321 Acer truncatum HOM05D006938 ORTHO05D008600 3.6e-12 75.5 98 43.9
Haze_11723 Corylus avellana HOM05D006938 ORTHO05D008600 3.6e-12 75.5 45 71.1
Lj6P721T41 Lonicera japonica HOM05D006938 ORTHO05D008600 3.6e-12 75.5 108 40.7
Psat6g189200 Pisum sativum HOM05D006938 ORTHO05D008600 3.6e-12 75.5 94 47.9
Prupe.1G345500 Prunus persica HOM05D006938 ORTHO05D008600 3.6e-12 75.5 107 41.1
Carub.0007s3179 Capsella rubella HOM05D006938 ORTHO05D008600 4.7e-12 75.1 86 48.8
MD13G1007500 Malus domestica HOM05D006938 ORTHO05D008600 4.7e-12 75.1 103 41.7
MD16G1000600 Malus domestica HOM05D006938 ORTHO05D008600 4.7e-12 75.1 58 58.6
Cfa008713 Carpinus fangiana HOM05D006938 ORTHO05D008600 6.2e-12 74.7 55 60.0
AUR62017669 Chenopodium quinoa HOM05D006938 ORTHO05D008600 6.2e-12 74.7 67 53.7
Hma1.2p1_0232F.1_g097690 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 6.2e-12 74.7 62 59.7
Rhsim06G0126000 Rhododendron simsii HOM05D006938 ORTHO05D008600 6.2e-12 74.7 55 63.6
Sopen02g005300 Solanum pennellii HOM05D006938 ORTHO05D008600 6.2e-12 74.7 107 44.9
Solyc02g021000.3 Solanum lycopersicum HOM05D006938 ORTHO05D008600 8.1e-12 74.3 107 43.0
CiPaw.09G164200 Carya illinoinensis HOM05D006938 ORTHO05D008600 1.1e-11 73.9 57 59.6
Manes.07G111600 Manihot esculenta HOM05D006938 ORTHO05D008600 1.1e-11 73.9 61 55.7
Manes.10G035800 Manihot esculenta HOM05D006938 ORTHO05D008600 1.1e-11 73.9 95 44.2
PGSC0003DMG400019837 Solanum tuberosum HOM05D006938 ORTHO05D008600 1.1e-11 73.9 62 58.1
AUR62015206 Chenopodium quinoa HOM05D006938 ORTHO05D008600 1.4e-11 73.6 59 59.3
SGA_v2.0_scaffold25G10864 Striga asiatica HOM05D006938 ORTHO05D008600 1.4e-11 73.6 43 76.7
CAN.G157.8 Capsicum annuum HOM05D006938 ORTHO05D008600 1.8e-11 73.2 58 60.3
SGA_v2.0_scaffold467G52037 Striga asiatica HOM05D006938 ORTHO05D008600 1.8e-11 73.2 45 73.3
AT5G36120 Arabidopsis thaliana HOM05D006938 ORTHO05D008600 2.3e-11 72.8 69 50.7
CSS0018133 Camellia sinensis var. sinensis HOM05D006938 ORTHO05D008600 2.3e-11 72.8 50 68.0
ClCG09G005720 Citrullus lanatus HOM05D006938 ORTHO05D008600 2.3e-11 72.8 53 62.3
Duzib084G0622 Durio zibethinus HOM05D006938 ORTHO05D008600 2.3e-11 72.8 102 42.2
Peaxi162Scf00363g00087 Petunia axillaris HOM05D006938 ORTHO05D008600 2.3e-11 72.8 108 44.4
PGR142G2203 Punica granatum HOM05D006938 ORTHO05D008600 2.3e-11 72.8 43 76.7
Actinidia11174 Actinidia chinensis HOM05D006938 ORTHO05D008600 3.1e-11 72.4 50 66.0
BcaB02g08043 Brassica carinata HOM05D006938 ORTHO05D008600 3.1e-11 72.4 55 63.6
BcaC08g44319 Brassica carinata HOM05D006938 ORTHO05D008600 3.1e-11 72.4 55 61.8
A05p16420 Brassica napus HOM05D006938 ORTHO05D008600 3.1e-11 72.4 55 61.8
C06p17420 Brassica napus HOM05D006938 ORTHO05D008600 3.1e-11 72.4 55 61.8
BolC6t36937H Brassica oleracea HOM05D006938 ORTHO05D008600 3.1e-11 72.4 55 61.8
Ciclev10032755m.g Citrus clementina HOM05D006938 ORTHO05D008600 3.1e-11 72.4 74 48.6
TWI53G1636 Tripterygium wilfordii HOM05D006938 ORTHO05D008600 3.1e-11 72.4 45 73.3
Sp7g06080 Schrenkiella parvula HOM05D006938 ORTHO05D008600 4.0e-11 72.0 52 63.5
BraA05t20549Z Brassica rapa HOM05D006938 ORTHO05D008600 5.2e-11 71.6 59 62.7
Thhalv10005006m.g Eutrema salsugineum HOM05D006938 ORTHO05D008600 5.2e-11 71.6 55 61.8
Hma1.2p1_0499F.1_g166850 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 6.8e-11 71.2 52 61.5
Nitab4.5_0002392g0050 Nicotiana tabacum HOM05D006938 ORTHO05D008600 6.8e-11 71.2 49 67.3
GSVIVG01010180001 Vitis vinifera HOM05D006938 ORTHO05D008600 6.8e-11 71.2 41 73.2
Nn4g24932 Nelumbo nucifera HOM05D006938 ORTHO05D008600 8.9e-11 70.9 61 52.5
Potri.005G199000 Populus trichocarpa HOM05D006938 ORTHO05D008600 8.9e-11 70.9 45 68.9
Sed0026401 Sechium edule HOM05D006938 ORTHO05D008600 8.9e-11 70.9 55 56.4
MELO3C015984.2 Cucumis melo HOM05D006938 ORTHO05D008600 1.2e-10 70.5 55 60.0
CsaV3_7G029440 Cucumis sativus L. HOM05D006938 ORTHO05D008600 1.2e-10 70.5 55 60.0
Oeu022179.1 Olea europaea HOM05D006938 ORTHO05D008600 1.2e-10 70.5 41 78.0
Migut.I00065 Erythranthe guttata HOM05D006938 ORTHO05D008600 1.5e-10 70.1 42 76.2
FvH4_4g36740 Fragaria vesca HOM05D006938 ORTHO05D008600 1.5e-10 70.1 45 64.4
FAN12G4276 Fragaria x ananassa HOM05D006938 ORTHO05D008600 1.5e-10 70.1 45 64.4
FAN17G2681 Fragaria x ananassa HOM05D006938 ORTHO05D008600 1.5e-10 70.1 45 64.4
HanXRQChr17g0540771 Helianthus annuus HOM05D006938 ORTHO05D008600 1.5e-10 70.1 53 60.4
RcHm_v2.0_Chr4g0446461 Rosa chinensis HOM05D006938 ORTHO05D008600 1.5e-10 70.1 45 64.4
Nitab4.5_0000139g0080 Nicotiana tabacum HOM05D006938 ORTHO05D008600 2.0e-10 69.7 49 65.3
AL7G45100 Arabidopsis lyrata HOM05D006938 ORTHO05D008600 2.6e-10 69.3 75 46.7
Thecc.03G060300 Theobroma cacao HOM05D006938 ORTHO05D008600 2.6e-10 69.3 50 64.0
Cpa.g.sc51.44 Carica papaya HOM05D006938 ORTHO05D008600 3.4e-10 68.9 45 66.7
ECA246G5327 Erigeron canadensis HOM05D006938 ORTHO05D008600 3.4e-10 68.9 64 51.6
RcHm_v2.0_Chr3g0449681 Rosa chinensis HOM05D006938 ORTHO05D008600 3.4e-10 68.9 43 65.1
THA.LOC104805738 Tarenaya hassleriana HOM05D006938 ORTHO05D008600 3.4e-10 68.9 65 50.8
Aqoxy3G04277 Aquilegia oxysepala HOM05D006938 ORTHO05D008600 5.8e-10 68.2 43 69.8
MBI06_g36504_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 1.7e-09 66.6 60 51.7
Cc07_g19080 Coffea canephora HOM05D006938 ORTHO05D008600 2.2e-09 66.2 56 55.4
CDE07G1356 Ceratophyllum demersum HOM05D002851 ORTHO05D003084 2.9e-09 65.9 52 59.6
HPP92_002496 Vanilla planifolia HOM05D006938 ORTHO05D008600 1.4e-08 63.5 45 57.8
HPP92_002538 Vanilla planifolia HOM05D006938 ORTHO05D008600 1.4e-08 63.5 45 57.8
Lsat_1_v5_gn_3_33800 Lactuca sativa HOM05D006938 ORTHO05D008600 1.9e-08 63.2 45 64.4
MBI06_g34033_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 1.9e-08 63.2 41 68.3
Zm00001eb362370 Zea mays HOM05D006938 ORTHO05D008600 4.1e-08 62.0 45 60.0
Aa31LG9G17890 Aethionema arabicum HOM05D006938 ORTHO05D008600 1.2e-07 60.5 57 50.9
Os01g0966200 Oryza sativa ssp. japonica HOM05D006938 ORTHO05D008600 1.2e-07 60.5 41 65.9
Mapoly0101s0070 Marchantia polymorpha HOM05D006938 ORTHO05D008600 6.0e-07 58.2 46 56.5
SEGI_34816 Sequoiadendron giganteum HOM05D006938 ORTHO05D008600 1.3e-06 57.0 59 42.4
Pp3c10_19880 Physcomitrium patens HOM05D006938 ORTHO05D008600 3.0e-06 55.8 53 49.1
AagrBONN_evm.TU.Sc2ySwM_344.2773 Anthoceros agrestis HOM05D006938 ORTHO05D008600 5.1e-06 55.1 46 54.3
CsaV3_4G025230 Cucumis sativus L. HOM05D006938 ORTHO05D008600 6.6e-06 54.7 43 60.5


User provided reference genes

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