Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 3.8e-210 734.6 364 100.0
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 1.5e-113 413.7 286 71.7
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 8.1e-112 407.9 296 68.2
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 1.4e-111 407.1 292 68.5
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 2.6e-110 402.9 293 67.9
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 1.7e-109 400.2 290 69.0
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 2.2e-109 399.8 292 66.4
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 3.8e-109 399.1 292 68.2
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 4.9e-109 398.7 289 69.9
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 1.1e-108 397.5 289 67.8
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 1.4e-108 397.1 292 66.4
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 7.1e-108 394.8 322 61.5
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 9.3e-108 394.4 286 69.6
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 1.2e-107 394.0 288 68.1
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.2e-107 394.0 292 66.1
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 2.7e-107 392.9 308 64.3
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 3.5e-107 392.5 285 68.8
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 2.3e-106 389.8 299 65.2
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 2.3e-106 389.8 308 63.6
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 3.0e-106 389.4 288 67.7
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 3.0e-106 389.4 290 66.2
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 3.0e-106 389.4 292 66.1
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 5.1e-106 388.7 288 67.0
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 5.1e-106 388.7 290 68.3
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 6.6e-106 388.3 288 67.4
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.1e-105 387.5 288 66.0
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 1.9e-105 386.7 288 67.0
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 7.3e-105 384.8 288 63.9
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 9.6e-105 384.4 292 64.7
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 1.1e-103 380.9 283 65.4
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 1.4e-103 380.6 332 59.9
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.8e-103 380.2 290 65.9
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 2.4e-103 379.8 287 65.5
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 3.1e-103 379.4 288 64.9
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 3.1e-103 379.4 278 66.2
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 4.0e-103 379.0 294 67.0
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 4.0e-103 379.0 283 65.0
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 5.3e-103 378.6 285 65.3
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 5.3e-103 378.6 318 60.4
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 6.9e-103 378.3 285 66.0
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 9.0e-103 377.9 288 65.3
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 1.2e-102 377.5 307 62.9
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.5e-102 377.1 308 61.4
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 1.5e-102 377.1 283 65.0
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 2.0e-102 376.7 314 59.9
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 4.5e-102 375.6 283 64.7
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 5.8e-102 375.2 288 63.5
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 7.6e-102 374.8 334 59.9
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 7.6e-102 374.8 334 59.9
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 7.6e-102 374.8 334 59.3
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 9.9e-102 374.4 334 59.3
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 9.9e-102 374.4 270 68.9
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.3e-101 374.0 288 64.6
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 1.3e-101 374.0 296 63.2
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 1.7e-101 373.6 269 69.5
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 2.9e-101 372.9 284 63.7
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 3.8e-101 372.5 288 66.0
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 3.8e-101 372.5 302 63.9
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 8.4e-101 371.3 270 65.6
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 1.1e-100 370.9 289 65.4
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 1.9e-100 370.2 319 60.8
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 1.9e-100 370.2 336 58.6
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 3.2e-100 369.4 289 64.0
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 3.2e-100 369.4 293 62.5
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 3.2e-100 369.4 332 58.4
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 5.4e-100 368.6 267 67.0
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 1.2e-99 367.5 289 64.4
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 1.6e-99 367.1 289 64.0
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 2.7e-99 366.3 287 64.5
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 2.7e-99 366.3 285 64.6
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 3.5e-99 365.9 289 63.7
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 4.6e-99 365.5 272 66.2
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 7.9e-99 364.8 274 65.7
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 1.0e-98 364.4 260 67.7
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 1.8e-98 363.6 287 63.4
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 2.3e-98 363.2 287 62.4
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 2.3e-98 363.2 346 57.5
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 3.9e-98 362.5 290 64.1
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 5.1e-98 362.1 339 57.5
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 8.7e-98 361.3 336 56.5
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 8.7e-98 361.3 296 63.9
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 3.3e-97 359.4 299 61.2
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 7.4e-97 358.2 302 60.9
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 1.3e-96 357.5 288 62.2
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 1.3e-96 357.5 307 59.6
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 1.6e-96 357.1 298 61.7
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 1.6e-96 357.1 326 57.1
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 3.7e-96 355.9 289 62.6
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 5.3e-95 352.1 293 62.8
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 5.3e-95 352.1 295 61.0
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 6.9e-95 351.7 300 59.7
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 1.5e-94 350.5 285 60.7
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 1.9e-92 343.6 380 51.1
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 7.9e-91 338.2 277 62.1
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 7.9e-91 338.2 305 57.0
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 2.5e-89 333.2 305 58.0
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 9.6e-89 331.3 252 64.3
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 2.4e-87 326.6 259 62.5
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 3.1e-87 326.2 386 48.7
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 2.0e-86 323.6 286 57.3
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 1.3e-85 320.9 273 60.8
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 2.2e-85 320.1 341 52.5
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 6.5e-85 318.5 255 60.0
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 1.9e-84 317.0 275 60.4
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 4.2e-84 315.8 311 54.3
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 5.5e-84 315.5 273 57.9
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 4.6e-83 312.4 235 65.1
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 1.1e-81 307.8 277 56.7
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 2.5e-81 306.6 241 62.7
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 7.4e-81 305.1 225 65.8
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 2.2e-80 303.5 236 64.8
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 7.9e-75 285.0 238 63.0
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 6.9e-71 271.9 231 60.6
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 9.1e-71 271.6 231 58.9
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 1.3e-69 267.7 319 46.7
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 1.7e-69 267.3 183 73.2
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.0e-66 258.1 289 48.8
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 5.0e-61 239.2 190 60.0
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 2.9e-53 213.4 144 79.9
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 1.2e-49 201.4 306 41.2
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 8.0e-43 178.7 207 47.3
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 1.5e-41 174.5 128 62.5
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 1.0e-37 161.8 137 59.9
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 4.4e-25 119.8 312 30.8
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 3.3e-20 103.6 87 62.1
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 1.6e-19 101.3 105 53.3
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 9.5e-12 75.5 83 50.6
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 3.1e-10 70.5 47 68.1


User provided reference genes

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