Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 2.1e-238 828.6 405 100.0
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 8.3e-166 587.4 405 70.9
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 5.4e-165 584.7 404 72.8
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 2.5e-162 575.9 403 70.5
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 4.3e-162 575.1 396 70.5
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 1.1e-160 570.5 401 70.1
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 1.4e-160 570.1 389 71.2
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 2.0e-159 566.2 401 68.8
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 3.7e-158 562.0 386 68.9
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 3.7e-158 562.0 386 70.7
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.4e-158 561.2 405 68.9
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.1e-157 560.5 405 68.6
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 9.2e-157 557.4 402 69.4
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.6e-156 556.6 405 68.4
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 7.8e-156 554.3 405 67.9
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 1.0e-155 553.9 403 67.0
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.3e-155 553.5 379 70.2
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.3e-155 552.7 412 67.0
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 5.0e-155 551.6 375 70.7
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 5.0e-155 551.6 376 69.7
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 6.6e-155 551.2 388 69.6
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 8.6e-155 550.8 373 71.8
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.1e-154 550.4 406 66.7
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.5e-154 550.1 404 68.3
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 1.9e-154 549.7 374 70.9
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 2.5e-154 549.3 410 66.6
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 3.3e-154 548.9 380 69.5
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 5.6e-154 548.1 377 69.2
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 7.3e-154 547.7 373 70.0
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 9.5e-154 547.4 405 66.4
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 1.2e-153 547.0 405 66.4
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 2.8e-153 545.8 348 74.4
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 3.6e-153 545.4 391 68.0
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 3.6e-153 545.4 376 70.5
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 1.1e-152 543.9 404 66.6
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 1.1e-152 543.9 404 66.6
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 1.4e-152 543.5 404 66.6
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 5.2e-152 541.6 404 65.8
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 8.9e-152 540.8 375 68.8
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.2e-151 540.4 345 74.5
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 1.5e-151 540.0 356 73.0
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 2.0e-151 539.7 400 66.2
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 2.6e-151 539.3 373 69.2
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 3.4e-151 538.9 403 65.3
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 3.4e-151 538.9 403 65.3
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 4.4e-151 538.5 404 65.1
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 4.4e-151 538.5 404 66.1
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 7.5e-151 537.7 391 67.8
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 9.9e-151 537.3 406 64.8
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 2.2e-150 536.2 386 68.1
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 2.9e-150 535.8 409 64.5
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 3.7e-150 535.4 387 67.2
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 3.7e-150 535.4 407 65.8
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.9e-150 535.0 346 73.1
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.1e-149 533.9 390 68.7
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 1.1e-149 533.9 377 69.2
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 1.4e-149 533.5 385 66.8
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.4e-149 533.5 385 66.8
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.4e-149 532.7 390 68.7
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 3.2e-149 532.3 375 69.3
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 5.4e-149 531.6 397 66.0
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 7.1e-149 531.2 393 66.4
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 7.1e-149 531.2 356 70.8
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.2e-148 530.4 401 66.6
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.6e-148 530.0 383 67.1
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 6.0e-148 528.1 373 67.6
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 7.8e-148 527.7 375 68.5
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.3e-147 526.9 375 67.5
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 2.3e-147 526.2 345 71.6
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.0e-147 525.8 357 68.3
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 1.5e-146 523.5 405 63.7
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.5e-146 523.5 349 71.6
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.5e-146 523.5 406 63.5
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 5.6e-146 521.5 393 66.4
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.8e-145 519.2 372 69.1
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 2.8e-145 519.2 398 66.6
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 3.6e-145 518.8 386 64.5
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 3.6e-145 518.8 388 64.9
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 6.2e-145 518.1 403 64.5
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.1e-144 517.3 371 69.0
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 1.4e-144 516.9 405 65.4
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 1.8e-144 516.5 346 69.9
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 2.4e-144 516.2 399 65.4
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 4.0e-144 515.4 378 66.9
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 5.2e-144 515.0 395 65.3
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 6.8e-144 514.6 404 64.6
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 8.9e-144 514.2 399 65.7
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 3.4e-143 512.3 400 64.8
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 7.6e-143 511.1 387 64.1
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.7e-142 510.0 387 66.1
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 2.2e-142 509.6 386 65.0
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 2.2e-142 509.6 379 64.6
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 2.9e-142 509.2 372 64.2
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.8e-142 508.8 353 70.5
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.9e-141 506.5 363 67.2
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.4e-141 506.1 362 67.4
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 4.1e-141 505.4 363 66.9
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 3.5e-140 502.3 313 74.4
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 4.6e-140 501.9 348 67.5
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 4.6e-140 501.9 325 71.7
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 7.8e-140 501.1 356 68.3
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 7.8e-140 501.1 389 64.0
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.1e-138 497.3 348 69.0
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.1e-138 497.3 356 68.3
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.5e-138 496.9 373 64.6
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 3.3e-138 495.7 341 69.2
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 3.3e-138 495.7 375 63.7
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 7.3e-138 494.6 371 63.9
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 1.4e-136 490.3 372 62.9
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 4.4e-135 485.3 308 73.4
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.2e-134 483.0 390 61.8
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 8.7e-131 471.1 402 61.2
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.5e-130 470.3 365 62.5
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 1.3e-126 457.2 339 64.6
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 2.9e-126 456.1 393 57.8
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 2.4e-125 453.0 317 65.6
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 3.5e-124 449.1 395 58.5
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 7.9e-124 448.0 387 58.7
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 1.3e-123 447.2 375 60.3
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 2.4e-120 436.4 374 56.7
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.0e-119 433.3 363 57.9
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 4.2e-117 425.6 305 64.6
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 4.6e-116 422.2 321 62.3
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.3e-115 420.6 385 56.9
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 9.6e-114 414.5 328 57.9
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 1.2e-111 407.5 347 57.3
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 2.6e-111 406.4 385 55.8
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.2e-110 403.3 235 77.9
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 9.3e-109 397.9 286 65.4
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 9.0e-104 381.3 308 60.1
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 8.5e-102 374.8 320 57.8
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 7.9e-100 368.2 210 81.4
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 7.7e-95 351.7 190 83.2
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 3.2e-93 346.3 190 81.1
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 5.0e-86 322.4 223 68.6
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 9.4e-85 318.2 223 70.0
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 2.7e-84 316.6 177 81.4
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.4e-80 303.5 298 55.0
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.6e-79 300.8 401 40.4
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 5.7e-74 282.3 344 42.7
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 9.1e-72 275.0 246 58.1
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 1.3e-70 271.2 304 44.4
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.1e-69 268.1 233 57.5
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 2.4e-64 250.4 225 56.4
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 3.1e-64 250.0 240 52.5
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 7.5e-58 228.8 367 35.7
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 8.0e-52 208.8 210 53.3
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 8.9e-51 205.3 347 35.4
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.9e-45 187.6 125 71.2
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.0e-34 151.0 148 54.7
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 6.2e-28 129.4 115 53.9
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 6.8e-27 125.9 118 53.4
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.2e-24 117.1 66 77.3
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 3.6e-20 103.6 57 80.7
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 7.9e-07 59.3 55 54.5


User provided reference genes

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