Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0006700 Simmondsia chinensis HOM05D006667 ORTHO05D008387 3.3e-146 522.3 411 100.0
Actinidia04346 Actinidia chinensis HOM05D006667 ORTHO05D008387 5.9e-103 378.6 399 77.7
TAR622G0133 Trochodendron aralioides HOM05D006667 ORTHO05D008387 2.6e-98 363.2 405 77.0
Prupe.1G349400 Prunus persica HOM05D006667 ORTHO05D008387 4.4e-98 362.5 401 78.6
RcHm_v2.0_Chr4g0446961 Rosa chinensis HOM05D006667 ORTHO05D008387 1.3e-97 360.9 403 78.2
FvH4_4g37160 Fragaria vesca HOM05D006667 ORTHO05D008387 1.1e-96 357.8 406 76.4
FAN12G3199 Fragaria x ananassa HOM05D006667 ORTHO05D008387 1.4e-96 357.5 406 76.4
Dinv07500 Davidia involucrata HOM05D006667 ORTHO05D008387 4.1e-96 355.9 401 76.8
Rhsim12G0089400 Rhododendron simsii HOM05D006667 ORTHO05D008387 7.8e-95 351.7 401 74.8
PGSC0003DMG400011513 Solanum tuberosum HOM05D006667 ORTHO05D008387 6.6e-94 348.6 399 75.2
Aqoxy3G04313 Aquilegia oxysepala HOM05D006667 ORTHO05D008387 5.2e-91 339.0 400 72.0
AUR62032948 Chenopodium quinoa HOM05D006667 ORTHO05D008387 1.5e-90 337.4 405 76.5
Peaxi162Scf00681g00319 Petunia axillaris HOM05D006667 ORTHO05D008387 2.9e-89 333.2 399 73.4
Hund24389 Selenicereus undatus HOM05D006667 ORTHO05D008387 1.4e-88 330.9 405 73.6
THA.LOC104819372 Tarenaya hassleriana HOM05D006667 ORTHO05D008387 1.4e-88 330.9 401 75.1
arahy.Tifrunner.gnm1.ann1.IH6UK4 Arachis hypogaea HOM05D006667 ORTHO05D008387 3.2e-88 329.7 397 77.1
C02p60910 Brassica napus HOM05D006667 ORTHO05D008387 7.1e-88 328.6 401 73.1
BcaC03g18029 Brassica carinata HOM05D006667 ORTHO05D008387 9.2e-88 328.2 401 73.1
A02p41020 Brassica napus HOM05D006667 ORTHO05D008387 1.2e-87 327.8 401 72.8
CSS0023228 Camellia sinensis var. sinensis HOM05D006667 ORTHO05D008387 2.1e-87 327.0 403 73.4
Lj6A708T61 Lonicera japonica HOM05D006667 ORTHO05D008387 2.1e-87 327.0 399 74.2
Lj6A713T75 Lonicera japonica HOM05D006667 ORTHO05D008387 2.1e-87 327.0 399 74.2
Potri.005G088800 Populus trichocarpa HOM05D006667 ORTHO05D008387 2.1e-87 327.0 399 74.9
Sabra05G0073100 Salix brachista HOM05D006667 ORTHO05D008387 2.1e-87 327.0 395 75.2
Lalb_Chr02g0143651 Lupinus albus HOM05D006667 ORTHO05D008387 6.0e-87 325.5 399 74.4
CANSAT78G2402 Cannabis sativa HOM05D006667 ORTHO05D008387 1.7e-86 323.9 401 75.6
QL03p045401 Quercus lobata HOM05D006667 ORTHO05D008387 3.0e-86 323.2 399 73.2
CsaV3_5G029020 Cucumis sativus L. HOM05D006667 ORTHO05D008387 3.9e-86 322.8 402 72.4
MELO3C011757.2 Cucumis melo HOM05D006667 ORTHO05D008387 5.1e-86 322.4 402 72.6
VMungo0720G1985 Vigna mungo HOM05D006667 ORTHO05D008387 5.1e-86 322.4 397 71.5
Lj5g0023243 Lotus japonicus HOM05D006667 ORTHO05D008387 1.5e-85 320.9 401 72.1
BraA02t09050Z Brassica rapa HOM05D006667 ORTHO05D008387 3.3e-85 319.7 401 72.1
Nitab4.5_0004979g0060 Nicotiana tabacum HOM05D006667 ORTHO05D008387 9.5e-85 318.2 398 72.4
Solyc04g008980.3 Solanum lycopersicum HOM05D006667 ORTHO05D008387 1.2e-84 317.8 399 72.2
EL10Ac9g22983 Beta vulgaris HOM05D006667 ORTHO05D008387 1.6e-84 317.4 402 73.4
Sopen04g004160 Solanum pennellii HOM05D006667 ORTHO05D008387 1.6e-84 317.4 399 72.4
Migut.L00803 Erythranthe guttata HOM05D006667 ORTHO05D008387 2.8e-84 316.6 402 72.9
Psat6g234200 Pisum sativum HOM05D006667 ORTHO05D008387 6.2e-84 315.5 397 72.0
Medtr1g114610 Medicago truncatula HOM05D006667 ORTHO05D008387 8.1e-84 315.1 397 72.5
SalBow2G2931 Salvia bowleyana HOM05D006667 ORTHO05D008387 1.1e-83 314.7 408 72.5
arahy.Tifrunner.gnm1.ann1.F8B6JQ Arachis hypogaea HOM05D006667 ORTHO05D008387 1.8e-83 313.9 388 77.1
Glyma.10G286600 Glycine max HOM05D006667 ORTHO05D008387 1.8e-83 313.9 398 75.6
Sabra07G0063900 Salix brachista HOM05D006667 ORTHO05D008387 1.5e-82 310.8 460 58.9
CARHR190200 Cardamine hirsuta HOM05D006667 ORTHO05D008387 1.3e-81 307.8 401 72.1
DCAR_002607 Daucus carota HOM05D006667 ORTHO05D008387 1.3e-81 307.8 403 69.2
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 2.9e-81 306.6 401 71.6
BraA06t26360Z Brassica rapa HOM05D006667 ORTHO05D008387 6.4e-81 305.4 401 70.8
Glyma.20G102500 Glycine max HOM05D006667 ORTHO05D008387 8.4e-81 305.1 397 74.6
AL6G34600 Arabidopsis lyrata HOM05D006667 ORTHO05D008387 2.4e-80 303.5 401 71.1
Hma1.2p1_0044F.1_g026320 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 3.2e-80 303.1 403 71.0
Aa31LG11G2790 Aethionema arabicum HOM05D006667 ORTHO05D008387 5.4e-80 302.4 401 70.8
Nitab4.5_0005997g0030 Nicotiana tabacum HOM05D006667 ORTHO05D008387 9.2e-80 301.6 398 70.1
CiPaw.05G172300 Carya illinoinensis HOM05D006667 ORTHO05D008387 6.0e-79 298.9 401 70.8
Sed0022119 Sechium edule HOM05D006667 ORTHO05D008387 6.0e-79 298.9 403 69.0
Cpa.g.sc60.94 Carica papaya HOM05D006667 ORTHO05D008387 7.8e-79 298.5 396 71.2
Sed0011343 Sechium edule HOM05D006667 ORTHO05D008387 1.0e-78 298.1 402 69.7
ClCG02G014160 Citrullus lanatus HOM05D006667 ORTHO05D008387 3.0e-78 296.6 402 69.4
MBI06_g27487_MAGBIO Magnolia biondii HOM05D006667 ORTHO05D008387 3.0e-78 296.6 399 71.2
Manes.04G162700 Manihot esculenta HOM05D006667 ORTHO05D008387 6.6e-78 295.4 402 72.4
Thhalv10004329m.g Eutrema salsugineum HOM05D006667 ORTHO05D008387 8.6e-78 295.0 401 69.3
CAN.G274.16 Capsicum annuum HOM05D006667 ORTHO05D008387 1.1e-77 294.7 405 68.9
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 1.9e-77 293.9 426 63.6
unitig_749.g13342 Utricularia gibba HOM05D006667 ORTHO05D008387 7.3e-77 292.0 399 69.9
Cfa008778 Carpinus fangiana HOM05D006667 ORTHO05D008387 9.6e-77 291.6 410 66.6
Gorai.008G147100 Gossypium raimondii HOM05D006667 ORTHO05D008387 2.8e-76 290.0 401 70.1
TWI74G1436 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 6.2e-76 288.9 407 68.8
Gohir.D12G135900 Gossypium hirsutum HOM05D006667 ORTHO05D008387 8.1e-76 288.5 401 69.8
Sp2g23820 Schrenkiella parvula HOM05D006667 ORTHO05D008387 2.6e-74 283.5 401 69.3
AT5G23340 Arabidopsis thaliana HOM05D006667 ORTHO05D008387 5.8e-74 282.3 401 69.6
A06p34280 Brassica napus HOM05D006667 ORTHO05D008387 7.6e-74 282.0 401 68.8
BolC7t44948H Brassica oleracea HOM05D006667 ORTHO05D008387 1.7e-73 280.8 401 68.6
Thecc.02G154400 Theobroma cacao HOM05D006667 ORTHO05D008387 1.7e-73 280.8 401 69.6
TPR.G4129 Trifolium pratense HOM05D006667 ORTHO05D008387 6.4e-73 278.9 399 68.7
MSTRG.8092 Avicennia marina HOM05D006667 ORTHO05D008387 1.4e-72 277.7 404 68.6
Atru.chr11.1242 Acer truncatum HOM05D006667 ORTHO05D008387 2.4e-72 276.9 399 68.9
Carub.0006s2112 Capsella rubella HOM05D006667 ORTHO05D008387 1.2e-71 274.6 400 68.5
vmacro15997 Vaccinium macrocarpon HOM05D006667 ORTHO05D008387 4.6e-71 272.7 538 50.2
Hma1.2p1_0044F.1_g026310 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 1.3e-70 271.2 436 51.6
BcaB07g29860 Brassica carinata HOM05D006667 ORTHO05D008387 1.1e-69 268.1 401 67.6
SGA_v2.0_scaffold80G25957 Striga asiatica HOM05D006667 ORTHO05D008387 1.1e-69 268.1 406 69.2
Zm00001eb185570 Zea mays HOM05D006667 ORTHO05D008387 1.9e-69 267.3 398 63.3
AUR62017733 Chenopodium quinoa HOM05D006667 ORTHO05D008387 3.3e-69 266.5 416 64.4
Ca_11261_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 9.6e-69 265.0 397 69.8
Ciclev10033734m.g Citrus clementina HOM05D006667 ORTHO05D008387 6.2e-68 262.3 399 60.7
PGR142G2507 Punica granatum HOM05D006667 ORTHO05D008387 2.4e-67 260.4 402 65.9
Eucgr.G02589 Eucalyptus grandis HOM05D006667 ORTHO05D008387 1.3e-62 244.6 401 67.8
COL.COLO4_33111 Corchorus olitorius HOM05D006667 ORTHO05D008387 3.9e-62 243.0 406 69.0
CDE04G2906 Ceratophyllum demersum HOM05D006667 ORTHO05D008387 4.5e-58 229.6 396 64.6
ECA246G5028 Erigeron canadensis HOM05D002605 ORTHO05D002842 1.6e-55 221.1 395 64.8
Haze_11790 Corylus avellana HOM05D006667 ORTHO05D008387 6.0e-55 219.2 405 59.0
PSO017G3027 Papaver somniferum HOM05D006667 ORTHO05D008387 5.1e-54 216.1 400 63.2
HanXRQChr17g0541041 Helianthus annuus HOM05D006667 ORTHO05D008387 1.5e-53 214.5 403 63.3
Lsat_1_v5_gn_3_34481 Lactuca sativa HOM05D006667 ORTHO05D008387 1.5e-53 214.5 399 63.7
Oeu027930.1 Olea europaea HOM05D006667 ORTHO05D008387 4.3e-53 213.0 402 63.7
TWI53G1716 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 2.0e-50 204.1 401 62.6
Nn3g18579 Nelumbo nucifera HOM05D006667 ORTHO05D008387 4.8e-44 183.0 404 62.1
Phvul.007G014200 Phaseolus vulgaris HOM05D006667 ORTHO05D008387 3.2e-40 170.2 180 54.4
Gohir.A12G132300 Gossypium hirsutum HOM05D006667 ORTHO05D008387 6.7e-38 162.5 182 46.7
SEGI_01489 Sequoiadendron giganteum HOM05D006667 ORTHO05D008387 1.1e-37 161.8 397 56.9
Os02g0636400 Oryza sativa ssp. japonica HOM05D006667 ORTHO05D008387 1.9e-37 161.0 180 45.0
HanXRQChr06g0171711 Helianthus annuus HOM05D006667 ORTHO05D008387 3.7e-36 156.8 398 57.5
arahy.Tifrunner.gnm1.ann1.6XP1A8 Arachis hypogaea HOM05D006667 ORTHO05D008387 1.1e-35 155.2 104 73.1
arahy.Tifrunner.gnm1.ann1.RI7T4X Arachis hypogaea HOM05D006667 ORTHO05D008387 1.1e-35 155.2 104 73.1
Ca_11262_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 6.9e-35 152.5 178 48.3
PSO170G5099 Papaver somniferum HOM05D006667 ORTHO05D008387 4.5e-34 149.8 106 70.8
HPP92_025485 Vanilla planifolia HOM05D006667 ORTHO05D008387 5.0e-33 146.4 107 70.1
Potri.007G075600 Populus trichocarpa HOM05D006667 ORTHO05D008387 6.5e-33 146.0 391 43.0
ATR0618G066 Amborella trichopoda HOM05D006667 ORTHO05D008387 1.4e-32 144.8 405 57.3
arahy.Tifrunner.gnm1.ann1.ALJ85P Arachis hypogaea HOM05D006667 ORTHO05D008387 2.7e-31 140.6 109 67.9
Dinv17648 Davidia involucrata HOM05D006667 ORTHO05D008387 1.3e-28 131.7 154 44.2
arahy.Tifrunner.gnm1.ann1.L6WSTP Arachis hypogaea HOM05D006667 ORTHO05D008387 1.8e-27 127.9 88 72.7
SMO116G0353 Selaginella moellendorffii HOM05D006667 ORTHO05D008387 1.3e-25 121.7 105 59.0
Medtr7g010500 Medicago truncatula HOM05D006667 ORTHO05D008387 6.3e-12 76.3 59 57.6
BcaC04g21805 Brassica carinata HOM05D006667 ORTHO05D008387 3.8e-09 67.0 74 45.9
Sed0004605 Sechium edule HOM05D001818 ORTHO05D001780 1.9e-08 64.7 128 32.0
Pp3c10_8230 Physcomitrium patens HOM05D006667 ORTHO05D008387 1.2e-07 62.0 59 59.3
C06p28130 Brassica napus HOM05D006667 ORTHO05D008387 1.6e-07 61.6 96 38.5
Migut.A00075 Erythranthe guttata HOM05D003317 ORTHO05D003696 4.7e-07 60.1 105 36.2
CSS0022259 Camellia sinensis var. sinensis HOM05D002813 ORTHO05D003203 6.1e-07 59.7 100 36.0
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 6.1e-07 59.7 128 32.0
Sc23g0005220 Simmondsia chinensis HOM05D002813 ORTHO05D003203 8.0e-07 59.3 141 31.9
TAR375G0950 Trochodendron aralioides HOM05D001818 ORTHO05D001780 8.0e-07 59.3 134 32.8
Nitab4.5_0002594g0070 Nicotiana tabacum HOM05D002762 ORTHO05D004643 1.0e-06 58.9 114 31.6
Peaxi162Scf00769g00116 Petunia axillaris HOM05D002762 ORTHO05D004643 1.0e-06 58.9 113 32.7
SMO228G0132 Selaginella moellendorffii HOM05D002762 ORTHO05D004643 1.0e-06 58.9 118 34.7
GSVIVG01017859001 Vitis vinifera HOM05D002762 ORTHO05D004643 1.0e-06 58.9 126 31.7
BcaNung04741 Brassica carinata HOM05D002125 ORTHO05D002105 1.4e-06 58.5 102 34.3
Phvul.003G097600 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 1.4e-06 58.5 121 33.9
vmacro11170 Vaccinium macrocarpon HOM05D001818 ORTHO05D001780 1.4e-06 58.5 131 30.5
EL10Ac8g19064 Beta vulgaris HOM05D003317 ORTHO05D003696 1.8e-06 58.2 102 33.3
Nitab4.5_0002295g0030 Nicotiana tabacum HOM05D002762 ORTHO05D004643 1.8e-06 58.2 114 31.6
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 1.8e-06 58.2 96 28.1
arahy.Tifrunner.gnm1.ann1.EJ0XN1 Arachis hypogaea HOM05D002762 ORTHO05D004643 2.3e-06 57.8 120 35.0
MBI19_g11829_MAGBIO Magnolia biondii HOM05D003317 ORTHO05D003696 3.0e-06 57.4 115 33.9
SGA_v2.0_scaffold21G09482 Striga asiatica HOM05D003317 ORTHO05D003696 4.0e-06 57.0 115 34.8
arahy.Tifrunner.gnm1.ann1.L75CTN Arachis hypogaea HOM05D002762 ORTHO05D004643 5.2e-06 56.6 120 34.2
CAN.G1247.4 Capsicum annuum HOM05D002762 ORTHO05D004643 5.2e-06 56.6 121 29.8
HanXRQChr01g0030871 Helianthus annuus HOM05D001818 ORTHO05D001780 5.2e-06 56.6 107 30.8
Phvul.006G157700 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 5.2e-06 56.6 120 34.2
BolC6t37979H Brassica oleracea HOM05D006667 ORTHO05D008387 6.8e-06 56.2 96 36.5
BraA03t09402Z Brassica rapa HOM05D002125 ORTHO05D002105 6.8e-06 56.2 109 33.0
Oeu018029.1 Olea europaea HOM05D003317 ORTHO05D003696 6.8e-06 56.2 104 33.7
PGSC0003DMG400030790 Solanum tuberosum HOM05D002762 ORTHO05D004643 6.8e-06 56.2 121 29.8
CiPaw.07G204200 Carya illinoinensis HOM05D002813 ORTHO05D003203 8.8e-06 55.8 138 33.3
FvH4_4g14060 Fragaria vesca HOM05D002762 ORTHO05D004643 8.8e-06 55.8 139 30.2
FAN12G3553 Fragaria x ananassa HOM05D002762 ORTHO05D004643 8.8e-06 55.8 139 30.9
FAN17G2967 Fragaria x ananassa HOM05D002762 ORTHO05D004643 8.8e-06 55.8 139 30.9


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