Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0006680 Simmondsia chinensis HOM05D002851 ORTHO05D003084 1.3e-54 216.1 103 100.0
MBI06_g37979_MAGBIO Magnolia biondii HOM05D002851 ORTHO05D003084 1.0e-11 73.6 54 61.1
AUR62024880 Chenopodium quinoa HOM05D002851 ORTHO05D003084 1.3e-11 73.2 81 51.9
Dinv44185 Davidia involucrata HOM05D002851 ORTHO05D003084 1.3e-11 73.2 105 44.8
Ah.10g026180 Amaranthus hybridus HOM05D002851 ORTHO05D003084 1.7e-11 72.8 85 51.8
Lsat_1_v5_gn_1_77541 Lactuca sativa HOM05D002851 ORTHO05D003084 5.1e-11 71.2 101 43.6
A03p03830 Brassica napus HOM05D002851 ORTHO05D003084 6.6e-11 70.9 96 44.8
CSS0024328 Camellia sinensis var. sinensis HOM05D002851 ORTHO05D003084 6.6e-11 70.9 57 59.6
PSO063G6795 Papaver somniferum HOM05D002851 ORTHO05D003084 8.7e-11 70.5 42 76.2
PSO782G2630 Papaver somniferum HOM05D002851 ORTHO05D003084 8.7e-11 70.5 42 76.2
Aa31LG3G18160 Aethionema arabicum HOM05D002851 ORTHO05D003084 1.1e-10 70.1 98 44.9
DCAR_028449 Daucus carota HOM05D002851 ORTHO05D003084 1.5e-10 69.7 64 56.2
THA.LOC104818388 Tarenaya hassleriana HOM05D002851 ORTHO05D003084 1.5e-10 69.7 80 47.5
CSS0046292 Camellia sinensis var. sinensis HOM05D002851 ORTHO05D003084 1.9e-10 69.3 57 57.9
Ciclev10015943m.g Citrus clementina HOM05D002851 ORTHO05D003084 1.9e-10 69.3 49 75.5
Cc05_g01600 Coffea canephora HOM05D002851 ORTHO05D003084 1.9e-10 69.3 57 61.4
Thhalv10014240m.g Eutrema salsugineum HOM05D002851 ORTHO05D003084 1.9e-10 69.3 53 64.2
Gohir.A03G168600 Gossypium hirsutum HOM05D002851 ORTHO05D003084 1.9e-10 69.3 37 83.8
Gohir.D02G191800 Gossypium hirsutum HOM05D002851 ORTHO05D003084 1.9e-10 69.3 37 83.8
Gorai.005G214600 Gossypium raimondii HOM05D002851 ORTHO05D003084 1.9e-10 69.3 37 83.8
Actinidia35983 Actinidia chinensis HOM05D002851 ORTHO05D003084 2.5e-10 68.9 59 59.3
EL10As14g24083 Beta vulgaris HOM05D002851 ORTHO05D003084 2.5e-10 68.9 96 46.9
AL6G18860 Arabidopsis lyrata HOM05D002851 ORTHO05D003084 3.3e-10 68.6 52 61.5
AT5G08400 Arabidopsis thaliana HOM05D002851 ORTHO05D003084 3.3e-10 68.6 52 61.5
CAN.G774.42 Capsicum annuum HOM05D002851 ORTHO05D003084 3.3e-10 68.6 45 71.1
CARHR204640 Cardamine hirsuta HOM05D002851 ORTHO05D003084 3.3e-10 68.6 90 43.3
Nitab4.5_0000822g0130 Nicotiana tabacum HOM05D002851 ORTHO05D003084 5.6e-10 67.8 53 62.3
Sp6g34540 Schrenkiella parvula HOM05D002851 ORTHO05D003084 5.6e-10 67.8 52 61.5
GSVIVG01034332001 Vitis vinifera HOM05D002851 ORTHO05D003084 5.6e-10 67.8 46 69.6
BcaB01g05600 Brassica carinata HOM05D002851 ORTHO05D003084 7.3e-10 67.4 98 44.9
AUR62030667 Chenopodium quinoa HOM05D002851 ORTHO05D003084 7.3e-10 67.4 81 49.4
FAN01G1618 Fragaria x ananassa HOM05D002851 ORTHO05D003084 7.3e-10 67.4 43 69.8
RcHm_v2.0_Chr4g0447251 Rosa chinensis HOM05D002851 ORTHO05D003084 7.3e-10 67.4 56 58.9
Atru.chr11.15 Acer truncatum HOM05D002851 ORTHO05D003084 9.6e-10 67.0 43 72.1
BraA03t09730Z Brassica rapa HOM05D002851 ORTHO05D003084 9.6e-10 67.0 52 59.6
Hma1.2p1_0886F.1_g232720 Hydrangea macrophylla HOM05D002851 ORTHO05D003084 9.6e-10 67.0 36 80.6
C03p04310 Brassica napus HOM05D002851 ORTHO05D003084 1.3e-09 66.6 47 70.2
BolC3t12964H Brassica oleracea HOM05D002851 ORTHO05D003084 1.3e-09 66.6 47 70.2
Nn4g25010 Nelumbo nucifera HOM05D002851 ORTHO05D003084 1.3e-09 66.6 43 72.1
MSTRG.9729 Avicennia marina HOM05D002851 ORTHO05D003084 1.6e-09 66.2 55 58.2
Cpa.g.sc774.2 Carica papaya HOM05D002851 ORTHO05D003084 1.6e-09 66.2 48 64.6
FvH4_7g04330 Fragaria vesca HOM05D002851 ORTHO05D003084 1.6e-09 66.2 36 80.6
MD16G1005400 Malus domestica HOM05D002851 ORTHO05D003084 2.1e-09 65.9 36 80.6
Solyc08g081080.3 Solanum lycopersicum HOM05D002851 ORTHO05D003084 2.1e-09 65.9 36 80.6
Sopen08g029400 Solanum pennellii HOM05D002851 ORTHO05D003084 2.1e-09 65.9 36 80.6
PGSC0003DMG400012207 Solanum tuberosum HOM05D002851 ORTHO05D003084 2.1e-09 65.9 36 80.6
Thecc.02G150700 Theobroma cacao HOM05D002851 ORTHO05D003084 2.1e-09 65.9 37 78.4
ATR0124G028 Amborella trichopoda HOM05D002851 ORTHO05D003084 2.8e-09 65.5 51 60.8
HanXRQChr11g0343671 Helianthus annuus HOM05D002851 ORTHO05D003084 2.8e-09 65.5 37 75.7
FAN06G1501 Fragaria x ananassa HOM05D002851 ORTHO05D003084 3.6e-09 65.1 55 56.4
Lj8C603G2 Lonicera japonica HOM05D002851 ORTHO05D003084 3.6e-09 65.1 50 60.0
PGR142G3147 Punica granatum HOM05D002851 ORTHO05D003084 3.6e-09 65.1 37 75.7
CDE04G1744 Ceratophyllum demersum HOM05D002851 ORTHO05D003084 4.8e-09 64.7 38 76.3
TAR371G0890 Trochodendron aralioides HOM05D002851 ORTHO05D003084 4.8e-09 64.7 35 80.0
BraA02t04956Z Brassica rapa HOM05D002851 ORTHO05D003084 6.2e-09 64.3 51 62.7
Carub.0006s0731 Capsella rubella HOM05D002851 ORTHO05D003084 6.2e-09 64.3 66 48.5
Migut.G01158 Erythranthe guttata HOM05D002851 ORTHO05D003084 6.2e-09 64.3 40 72.5
Rhsim09G0026700 Rhododendron simsii HOM05D002851 ORTHO05D003084 6.2e-09 64.3 36 80.6
RhsimUnG0195900 Rhododendron simsii HOM05D002851 ORTHO05D003084 6.2e-09 64.3 36 80.6
Peaxi162Scf00126g00237 Petunia axillaris HOM05D002851 ORTHO05D003084 8.1e-09 63.9 45 64.4
SalBow6G4106 Salvia bowleyana HOM05D002851 ORTHO05D003084 8.1e-09 63.9 46 65.2
Sed0007853 Sechium edule HOM05D002851 ORTHO05D003084 8.1e-09 63.9 45 68.9
Nitab4.5_0000878g0030 Nicotiana tabacum HOM05D002851 ORTHO05D003084 1.4e-08 63.2 53 58.5
MELO3C011773.2 Cucumis melo HOM05D002851 ORTHO05D003084 3.1e-08 62.0 35 82.9
CsaV3_5G029220 Cucumis sativus L. HOM05D002851 ORTHO05D003084 3.1e-08 62.0 35 82.9
Aqoxy5G04226 Aquilegia oxysepala HOM05D002851 ORTHO05D003084 4.0e-08 61.6 35 77.1
SGA_v2.0_scaffold120G32962 Striga asiatica HOM05D002851 ORTHO05D003084 4.0e-08 61.6 45 64.4
Potri.010G255300 Populus trichocarpa HOM05D002851 ORTHO05D003084 5.3e-08 61.2 33 78.8
Sabra10G0198700 Salix brachista HOM05D002851 ORTHO05D003084 5.3e-08 61.2 33 78.8
TWI53G0312 Tripterygium wilfordii HOM05D002851 ORTHO05D003084 5.3e-08 61.2 44 68.2
CiPaw.15G000300 Carya illinoinensis HOM05D002851 ORTHO05D003084 6.9e-08 60.8 46 63.0
Phvul.004G000700 Phaseolus vulgaris HOM05D002851 ORTHO05D003084 6.9e-08 60.8 47 61.7
Ca_04128_v3 Cicer arietinum L. HOM05D002851 ORTHO05D003084 9.0e-08 60.5 39 66.7
Glyma.03G000100 Glycine max HOM05D002851 ORTHO05D003084 9.0e-08 60.5 48 62.5
Medtr6g004030 Medicago truncatula HOM05D002851 ORTHO05D003084 1.2e-07 60.1 48 58.3
HPP92_021120 Vanilla planifolia HOM05D002851 ORTHO05D003084 1.2e-07 60.1 33 78.8
Lalb_Chr03g0041051 Lupinus albus HOM05D002851 ORTHO05D003084 2.0e-07 59.3 33 78.8
Manes.14G174550 Manihot esculenta HOM05D002851 ORTHO05D003084 2.0e-07 59.3 43 67.4
Oeu020498.1 Olea europaea HOM05D002851 ORTHO05D003084 2.6e-07 58.9 51 58.8
TPR.G25240 Trifolium pratense HOM05D002851 ORTHO05D003084 2.6e-07 58.9 67 43.3
arahy.Tifrunner.gnm1.ann1.20K2MK Arachis hypogaea HOM05D002851 ORTHO05D003084 3.4e-07 58.5 35 74.3
Lj2g0024534 Lotus japonicus HOM05D002851 ORTHO05D003084 3.4e-07 58.5 45 60.0
Glyma.19G000500 Glycine max HOM05D002851 ORTHO05D003084 4.5e-07 58.2 52 53.8
Cfa018666 Carpinus fangiana HOM05D002851 ORTHO05D003084 7.6e-07 57.4 33 75.8
unitig_92.g28213 Utricularia gibba HOM05D002851 ORTHO05D003084 7.6e-07 57.4 58 51.7
Psat1g053160 Pisum sativum HOM05D002851 ORTHO05D003084 9.9e-07 57.0 49 57.1
QL01p000192 Quercus lobata HOM05D002851 ORTHO05D003084 9.9e-07 57.0 33 72.7
QL01p000204 Quercus lobata HOM05D000211 ORTHO05D014696 9.9e-07 57.0 33 72.7
Haze_17394 Corylus avellana HOM05D001168 ORTHO05D003084 1.3e-06 56.6 52 57.7
Zm00001eb190770 Zea mays HOM05D002851 ORTHO05D003084 1.3e-06 56.6 50 58.0
COL.COLO4_08314 Corchorus olitorius HOM05D002851 ORTHO05D003084 1.7e-06 56.2 31 77.4
CANSAT78G1074 Cannabis sativa HOM05D002851 ORTHO05D003084 2.9e-06 55.5 52 57.7
Nitab4.5_0017134g0010 Nicotiana tabacum HOM05D002851 ORTHO05D003084 3.8e-06 55.1 29 79.3
ClCG11G012820 Citrullus lanatus HOM05D002851 ORTHO05D003084 8.4e-06 53.9 29 82.8
Prupe.1G352300 Prunus persica HOM05D002851 ORTHO05D003084 8.4e-06 53.9 28 82.1


User provided reference genes

Program Settings