Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0006280 Simmondsia chinensis HOM05D003313 ORTHO05D004217 0.0e+00 1231.9 703 100.0
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 1.3e-291 1006.1 607 86.0
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 9.3e-290 1000.0 584 87.3
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 4.3e-287 991.1 585 87.0
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 2.2e-275 952.2 592 82.1
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 6.5e-275 950.7 604 81.3
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 1.4e-274 949.5 594 82.0
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 6.1e-273 944.1 593 81.3
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 7.9e-273 943.7 583 83.5
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 1.4e-272 943.0 589 81.5
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 2.3e-272 942.2 604 80.3
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 3.0e-272 941.8 482 100.0
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 1.4e-269 932.9 601 79.0
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 6.9e-269 930.6 619 77.7
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 1.2e-268 929.9 596 79.5
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 2.6e-268 928.7 601 78.9
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 4.5e-268 927.9 596 79.7
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 4.5e-268 927.9 598 79.8
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.3e-267 926.4 601 78.7
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 1.3e-267 926.4 603 79.6
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.7e-267 926.0 601 78.5
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 3.8e-267 924.9 604 79.8
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 5.0e-267 924.5 601 78.5
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 8.5e-267 923.7 593 80.3
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 8.5e-267 923.7 593 80.3
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 2.5e-266 922.2 601 78.2
TPR.G8371 Trifolium pratense HOM05D003313 ORTHO05D004217 2.5e-266 922.2 601 78.7
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 3.2e-266 921.8 617 77.5
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 7.2e-266 920.6 602 79.7
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 7.2e-266 920.6 602 79.7
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 9.4e-266 920.2 580 81.2
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 9.4e-266 920.2 604 79.5
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 9.4e-266 920.2 587 80.1
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.2e-265 919.8 595 80.0
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 1.6e-265 919.5 593 79.3
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 1.6e-265 919.5 590 80.0
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 3.6e-265 918.3 588 78.7
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 3.0e-264 915.2 590 80.2
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 8.8e-264 913.7 592 80.6
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 8.8e-264 913.7 592 79.7
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 4.4e-263 911.4 587 80.7
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 5.7e-263 911.0 604 78.0
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 1.3e-262 909.8 588 78.6
vmacro01644 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 1.4e-261 906.4 601 78.7
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 1.8e-261 906.0 588 79.8
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 3.1e-261 905.2 602 78.1
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 9.1e-261 903.7 584 78.6
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 2.0e-260 902.5 604 78.1
Actinidia17722 Actinidia chinensis HOM05D003313 ORTHO05D004217 5.9e-260 901.0 592 79.4
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.0e-259 900.2 595 79.3
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.0e-259 900.2 595 79.3
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 1.0e-259 900.2 592 78.7
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 2.2e-259 899.0 624 76.0
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 3.8e-259 898.3 610 76.7
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 1.5e-258 896.3 660 72.0
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 1.9e-258 896.0 607 76.6
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 5.5e-258 894.4 610 76.9
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 9.4e-258 893.6 604 77.6
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 1.2e-257 893.3 604 77.6
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 1.6e-257 892.9 579 78.4
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 2.1e-257 892.5 608 76.8
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 2.7e-257 892.1 608 76.8
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 2.3e-256 889.0 605 76.9
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 3.9e-256 888.3 576 78.3
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 5.2e-256 887.9 578 77.9
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 2.0e-255 885.9 618 75.2
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 4.4e-255 884.8 579 77.9
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 7.4e-255 884.0 579 78.1
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 1.7e-254 882.9 597 76.5
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 2.8e-254 882.1 587 77.2
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 1.1e-253 880.2 600 76.0
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 2.4e-253 879.0 578 77.0
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 2.0e-252 875.9 594 77.3
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 4.5e-252 874.8 609 75.7
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 4.5e-252 874.8 568 78.0
TWI39G0913 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 1.0e-251 873.6 570 77.7
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 2.2e-251 872.5 566 78.3
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 2.2e-251 872.5 566 78.3
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 2.2e-251 872.5 600 75.5
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 2.9e-251 872.1 600 75.5
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 5.0e-251 871.3 602 76.1
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 6.5e-251 870.9 566 78.1
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 6.5e-251 870.9 566 78.1
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 8.5e-251 870.5 600 75.5
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 1.9e-250 869.4 605 73.9
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.9e-250 869.4 600 75.5
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 3.2e-250 868.6 571 77.1
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 4.2e-250 868.2 584 77.7
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 4.2e-250 868.2 600 75.2
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 5.5e-250 867.8 569 77.2
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 5.5e-250 867.8 569 77.2
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 1.2e-249 866.7 604 74.5
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 1.2e-249 866.7 603 75.1
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 1.8e-248 862.8 572 78.1
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 1.8e-248 862.8 584 76.0
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 2.3e-248 862.4 597 74.7
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 6.8e-248 860.9 600 73.5
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 2.6e-247 859.0 600 75.0
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 5.7e-247 857.8 611 73.5
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 2.8e-246 855.5 562 77.4
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 2.4e-245 852.4 572 76.9
Haze_14998 Corylus avellana HOM05D003313 ORTHO05D004217 5.4e-245 851.3 635 72.0
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 7.0e-245 850.9 594 76.1
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 1.2e-244 850.1 613 73.7
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 5.5e-242 841.3 606 72.3
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 3.6e-241 838.6 584 75.9
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 1.7e-238 829.7 589 74.4
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 2.7e-236 822.4 591 73.9
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 1.0e-235 820.5 594 72.4
MD10G1148800 Malus domestica HOM05D003313 ORTHO05D004217 1.7e-235 819.7 620 71.6
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 1.6e-233 813.1 590 72.7
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 2.1e-233 812.8 603 72.1
Gohir.D08G026400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 3.6e-233 812.0 566 74.9
Gorai.004G022900 Gossypium raimondii HOM05D003313 ORTHO05D004217 3.6e-233 812.0 566 74.9
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 1.7e-227 793.1 517 76.8
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 2.6e-223 779.2 591 70.1
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 1.6e-217 760.0 526 75.1
Gohir.A08G016300 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.2e-196 690.6 564 66.8
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 7.6e-191 671.4 438 76.9
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 1.4e-181 640.6 579 58.9
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 3.0e-179 632.9 611 58.1
AagrBONN_evm.TU.Sc2ySwM_228.3123 Anthoceros agrestis HOM05D003313 ORTHO05D004217 4.5e-175 619.0 611 57.0
Pp3c1_36370 Physcomitrium patens HOM05D003313 ORTHO05D004217 5.5e-173 612.1 585 58.3
DCAR_029313 Daucus carota HOM05D003313 ORTHO05D004217 3.0e-171 606.3 430 74.0
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 9.3e-165 584.7 376 77.4
DCAR_029312 Daucus carota HOM05D003313 ORTHO05D004217 2.2e-161 573.5 409 73.6
DCAR_032260 Daucus carota HOM05D003313 ORTHO05D004217 2.2e-161 573.5 409 73.6
CDE09G0721 Ceratophyllum demersum HOM05D003313 ORTHO05D004217 1.7e-158 563.9 417 71.0
CBR_g3034 Chara braunii HOM05D003313 ORTHO05D004217 1.3e-137 494.6 562 49.8
SHI06529 Sapria himalayana HOM05D003313 ORTHO05D004217 1.7e-105 387.9 417 51.8
Cpa.g.sc17.15 Carica papaya HOM05D003313 ORTHO05D004217 1.6e-103 381.3 265 77.4
Hund25753 Selenicereus undatus HOM05D003313 ORTHO05D004217 6.8e-91 339.3 284 65.1
DCAR_032163 Daucus carota HOM05D003313 ORTHO05D004217 5.8e-82 309.7 242 66.5
ATR0620G069 Amborella trichopoda HOM05D003313 ORTHO05D004217 2.6e-66 257.7 209 67.9
Cpa.g.sc17.16 Carica papaya HOM05D003313 ORTHO05D004217 7.2e-48 196.4 123 78.0
Nitab4.5_0011890g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 2.2e-44 184.9 163 65.0
Hma1.2p1_0052F.1_g030180 Hydrangea macrophylla HOM05D003313 ORTHO05D004217 3.7e-44 184.1 112 82.1
ATR0620G130 Amborella trichopoda HOM05D003313 ORTHO05D004217 2.6e-37 161.4 173 55.5
CBR_g53818 Chara braunii HOM05D003313 ORTHO05D004217 2.8e-36 157.9 154 52.6
PRCOL_00001888 Prasinoderma coloniale HOM05D003313 ORTHO05D004217 6.3e-36 156.8 514 28.4
Cpa.g.sc17.17 Carica papaya HOM05D003313 ORTHO05D004217 3.4e-34 151.0 74 93.2
CBR_g53812 Chara braunii HOM05D003313 ORTHO05D004217 1.0e-30 139.4 98 64.3
Nitab4.5_0005421g0020 Nicotiana tabacum HOM05D003313 ORTHO05D004217 3.3e-29 134.4 163 54.0
EL10Ac6g13974 Beta vulgaris HOM05D000877 ORTHO05D012137 1.3e-25 122.5 141 50.4
Cre12.g535350 Chlamydomonas reinhardtii HOM05D003313 ORTHO05D004217 1.9e-16 92.0 292 28.4
GSVIVG01038281001 Vitis vinifera HOM05D003313 ORTHO05D004217 2.7e-15 88.2 72 68.1
Sed0004563 Sechium edule HOM05D003313 ORTHO05D004217 4.7e-15 87.4 84 53.6
FvH4_1g29860 Fragaria vesca HOM05D003313 ORTHO05D015668 1.7e-12 79.0 54 66.7
FAN15G1318 Fragaria x ananassa HOM05D003313 ORTHO05D015668 2.2e-12 78.6 58 63.8
FAN07G0876 Fragaria x ananassa HOM05D003313 ORTHO05D015668 6.3e-12 77.0 58 63.8
FAN21G1344 Fragaria x ananassa HOM05D003313 ORTHO05D015668 8.3e-12 76.6 54 64.8
FAN19G3111 Fragaria x ananassa HOM05D003313 ORTHO05D015668 1.4e-11 75.9 58 62.1
FAN02G4136 Fragaria x ananassa HOM05D003313 ORTHO05D015668 2.4e-11 75.1 58 60.3
Os01g0653350 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 3.1e-11 74.7 54 66.7
FAN15G2142 Fragaria x ananassa HOM05D003313 ORTHO05D015668 4.5e-10 70.9 58 58.6
FAN05G0528 Fragaria x ananassa HOM05D003313 ORTHO05D015668 1.0e-09 69.7 54 63.0
vmacro04716 Vaccinium macrocarpon HOM05D001931 ORTHO05D001891 1.0e-09 69.7 41 78.0
FAN10G1842 Fragaria x ananassa HOM05D003313 ORTHO05D015668 1.3e-09 69.3 54 57.4
ATR0620G024 Amborella trichopoda HOM05D003313 ORTHO05D004217 8.6e-09 66.6 101 51.5
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 1.9e-08 65.5 68 47.1
DCAR_032162 Daucus carota HOM05D003313 ORTHO05D004217 1.6e-07 62.4 93 49.5


User provided reference genes

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