Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 8.0e-207 723.8 436 100.0
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 3.7e-87 326.2 386 52.3
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 5.4e-86 322.4 378 52.9
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 2.9e-84 316.6 401 56.4
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 3.8e-84 316.2 390 51.8
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 6.6e-84 315.5 382 52.9
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 2.5e-83 313.5 384 51.3
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 2.8e-82 310.1 397 50.1
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 4.7e-82 309.3 393 49.4
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 4.0e-81 306.2 389 50.1
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 1.2e-80 304.7 378 51.1
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 1.3e-79 301.2 391 48.1
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 3.7e-79 299.7 397 48.1
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 7.0e-78 295.4 390 46.9
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 1.2e-77 294.7 391 49.4
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 3.5e-77 293.1 449 47.4
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 5.0e-76 289.3 403 45.4
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 3.6e-74 283.1 395 46.8
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 4.7e-74 282.7 459 45.5
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 6.1e-74 282.3 387 48.1
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 1.4e-73 281.2 385 49.9
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.8e-73 280.8 319 54.5
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 2.3e-73 280.4 387 47.5
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 4.4e-72 276.2 401 45.1
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 1.7e-71 274.2 329 51.4
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 2.9e-71 273.5 457 44.0
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 4.1e-70 269.6 453 41.3
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 7.0e-70 268.9 386 45.1
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 2.7e-69 266.9 326 51.2
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 1.0e-68 265.0 439 43.1
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 1.3e-68 264.6 335 48.7
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 5.0e-68 262.7 445 45.8
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 6.6e-68 262.3 331 48.6
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 1.5e-67 261.2 383 47.0
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 1.2e-66 258.1 375 46.1
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 1.6e-66 257.7 425 43.1
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 1.4e-65 254.6 310 51.3
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 3.1e-65 253.4 391 44.0
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 2.0e-64 250.8 385 43.9
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 2.0e-64 250.8 393 45.0
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 7.5e-64 248.8 410 43.2
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.3e-63 248.1 387 44.2
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.7e-63 247.7 384 43.8
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 1.7e-63 247.7 384 43.8
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 4.9e-63 246.1 299 51.2
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 8.3e-63 245.4 445 45.2
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 7.1e-62 242.3 341 46.3
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 1.6e-61 241.1 376 46.5
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 6.0e-61 239.2 382 43.5
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 2.3e-60 237.3 513 36.5
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 5.1e-60 236.1 367 42.2
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 1.5e-59 234.6 368 42.1
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 4.3e-59 233.0 368 42.1
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 9.5e-59 231.9 368 42.1
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.2e-58 231.5 383 41.5
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.2e-58 231.5 408 40.2
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 4.7e-58 229.6 370 42.7
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 8.1e-58 228.8 358 41.6
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 8.1e-58 228.8 318 45.3
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 1.4e-57 228.0 358 41.6
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 4.0e-57 226.5 331 47.1
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 5.2e-57 226.1 403 39.7
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 6.8e-57 225.7 378 42.9
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 8.9e-57 225.3 358 41.3
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 1.5e-56 224.6 386 41.7
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 2.0e-56 224.2 358 41.3
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 2.0e-56 224.2 358 41.1
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 1.7e-55 221.1 328 46.0
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 3.7e-55 219.9 380 40.5
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.9e-54 217.6 374 40.4
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 7.1e-54 215.7 370 40.0
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 9.2e-54 215.3 377 41.1
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 1.2e-53 214.9 311 45.3
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.6e-53 214.5 369 40.4
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 4.6e-53 213.0 382 41.1
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 4.6e-53 213.0 314 42.7
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 6.0e-53 212.6 381 40.4
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 2.3e-52 210.7 367 40.9
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 2.3e-52 210.7 368 39.9
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.0e-52 210.3 388 40.2
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 3.9e-52 209.9 312 44.9
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 3.9e-52 209.9 389 41.1
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 2.5e-51 207.2 376 40.4
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 2.5e-51 207.2 317 42.3
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.6e-50 203.4 390 38.5
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 4.7e-50 203.0 304 44.4
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.1e-49 201.8 368 39.1
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.1e-49 201.8 392 39.5
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 1.1e-49 201.8 309 44.7
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.4e-49 201.4 325 44.3
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.1e-49 200.3 388 39.2
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 3.1e-49 200.3 318 41.8
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 4.0e-49 199.9 309 40.5
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 1.2e-48 198.4 323 43.0
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 1.2e-48 198.4 308 42.9
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 4.4e-48 196.4 233 51.9
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 5.8e-48 196.1 392 37.5
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 7.6e-48 195.7 378 41.3
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 9.9e-48 195.3 303 43.6
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 1.3e-47 194.9 306 44.4
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 2.2e-47 194.1 358 37.4
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 2.2e-47 194.1 378 39.2
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 3.8e-47 193.4 375 38.7
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 3.8e-47 193.4 318 42.8
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 6.4e-47 192.6 374 38.2
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 6.4e-47 192.6 375 38.9
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 8.4e-47 192.2 330 39.4
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 1.9e-46 191.0 376 38.6
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 7.1e-46 189.1 382 37.4
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 2.1e-45 187.6 144 68.1
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 4.6e-45 186.4 154 63.0
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 2.3e-44 184.1 347 37.5
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 3.9e-44 183.3 386 38.3
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 5.1e-44 183.0 363 38.8
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 8.7e-44 182.2 388 36.3
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 1.1e-43 181.8 365 38.1
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 4.3e-43 179.9 366 36.6
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 4.3e-43 179.9 301 41.5
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 4.3e-43 179.9 339 41.3
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 5.6e-43 179.5 301 41.2
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.3e-42 178.3 394 36.3
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 1.3e-42 178.3 370 37.0
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.8e-42 176.4 381 38.3
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 6.2e-42 176.0 309 41.1
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.4e-38 164.1 321 39.3
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 5.4e-38 162.9 208 47.6
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 8.7e-36 155.6 94 76.6
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 1.2e-32 145.2 316 37.7
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 2.9e-31 140.6 222 42.3
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 2.1e-29 134.4 290 42.8
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 6.0e-29 132.9 390 31.5
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 6.0e-29 132.9 390 31.5
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 2.3e-28 131.0 296 35.1
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 9.6e-27 125.6 315 41.0
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 6.5e-23 112.8 67 79.1
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.2e-22 110.2 71 70.4
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.2e-22 110.2 71 70.4
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.5e-19 100.9 264 33.3
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 3.3e-19 100.5 59 79.7
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 1.3e-18 98.6 55 83.6
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 2.6e-16 90.9 70 68.6
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 7.6e-16 89.4 213 37.1
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 9.3e-14 82.4 90 46.7
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.7e-13 80.9 49 79.6
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.8e-12 78.2 78 48.7
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 3.0e-12 77.4 299 30.8
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 5.1e-12 76.6 152 32.2
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 5.1e-12 76.6 72 54.2
EL10Ac8g20467 Beta vulgaris HOM05D003936 ORTHO05D004747 6.7e-12 76.3 148 37.8
EL10Ac4g08132 Beta vulgaris HOM05D003936 ORTHO05D004747 3.4e-08 63.9 51 62.7
EL10Ac4g08139 Beta vulgaris HOM05D003936 ORTHO05D004747 3.4e-08 63.9 51 62.7
EL10Ac4g09849 Beta vulgaris HOM05D003936 ORTHO05D004747 3.4e-08 63.9 51 62.7
EL10Ac9g21844 Beta vulgaris HOM05D001651 ORTHO05D000277 1.0e-07 62.4 202 30.7
EL10Ac4g08736 Beta vulgaris HOM05D003936 ORTHO05D004747 1.9e-06 58.2 40 70.0


User provided reference genes

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