Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0005890 Simmondsia chinensis HOM05D007722 ORTHO05D009730 1.1e-68 263.1 125 100.0
COL.COLO4_12955 Corchorus olitorius HOM05D007722 ORTHO05D009730 3.4e-17 92.0 107 52.3
Gorai.011G083600 Gossypium raimondii HOM05D007722 ORTHO05D009730 8.3e-16 87.4 115 51.3
Gohir.A10G073900 Gossypium hirsutum HOM05D007722 ORTHO05D009730 1.9e-15 86.3 115 51.3
Gohir.D10G075700 Gossypium hirsutum HOM05D007722 ORTHO05D009730 2.4e-15 85.9 115 51.3
Lalb_Chr25g0279351 Lupinus albus HOM05D007722 ORTHO05D009730 9.2e-15 84.0 117 44.4
Prupe.3G085400 Prunus persica HOM05D007722 ORTHO05D009730 1.6e-14 83.2 114 42.1
FvH4_6g29860 Fragaria vesca HOM05D007722 ORTHO05D009730 2.1e-14 82.8 111 45.0
FAN14G1239 Fragaria x ananassa HOM05D007722 ORTHO05D009730 2.1e-14 82.8 111 45.0
Potri.001G192500 Populus trichocarpa HOM05D007722 ORTHO05D009730 2.7e-14 82.4 87 51.7
Duzib160G0092 Durio zibethinus HOM05D007722 ORTHO05D009730 7.8e-14 80.9 125 46.4
TAR636G1020 Trochodendron aralioides HOM05D007722 ORTHO05D009730 1.0e-13 80.5 117 46.2
Glyma.07G030600 Glycine max HOM05D007722 ORTHO05D009730 1.3e-13 80.1 72 50.0
ECA232G4504 Erigeron canadensis HOM05D000985 ORTHO05D000866 1.7e-13 79.7 68 52.9
Gohir.A05G126200 Gossypium hirsutum HOM05D007722 ORTHO05D009730 3.0e-13 79.0 68 55.9
Gohir.D05G127100 Gossypium hirsutum HOM05D007722 ORTHO05D009730 3.0e-13 79.0 68 55.9
Gorai.009G131200 Gossypium raimondii HOM05D007722 ORTHO05D009730 3.0e-13 79.0 68 55.9
Os01g0392100 Oryza sativa ssp. japonica HOM05D007722 ORTHO05D009730 3.0e-13 79.0 64 56.2
Thecc.06G022100 Theobroma cacao HOM05D007722 ORTHO05D009730 3.0e-13 79.0 135 42.2
MD17G1210100 Malus domestica HOM05D007722 ORTHO05D009730 3.9e-13 78.6 111 41.4
Phvul.010G155500 Phaseolus vulgaris HOM05D007722 ORTHO05D009730 6.6e-13 77.8 102 48.0
Psat7g256360 Pisum sativum HOM05D007722 ORTHO05D009730 6.6e-13 77.8 111 46.8
Nn2g12058 Nelumbo nucifera HOM05D007722 ORTHO05D009730 8.6e-13 77.4 112 43.8
FAN09G0448 Fragaria x ananassa HOM05D007722 ORTHO05D009730 1.1e-12 77.0 111 42.3
CARHR090870 Cardamine hirsuta HOM05D007722 ORTHO05D009730 1.5e-12 76.6 122 37.7
EL10Ac9g21908 Beta vulgaris HOM05D007722 ORTHO05D009730 3.3e-12 75.5 125 40.8
Haze_16545 Corylus avellana HOM05D007722 ORTHO05D009730 3.3e-12 75.5 121 43.8
CSS0036618 Camellia sinensis var. sinensis HOM05D007722 ORTHO05D009730 4.3e-12 75.1 77 50.6
MBI01_g35411_MAGBIO Magnolia biondii HOM05D007722 ORTHO05D009730 4.3e-12 75.1 125 40.0
Rhsim08G0213600 Rhododendron simsii HOM05D007722 ORTHO05D009730 4.3e-12 75.1 72 55.6
Cfa001975 Carpinus fangiana HOM05D007722 ORTHO05D009730 7.3e-12 74.3 121 43.0
GSVIVG01017323001 Vitis vinifera HOM05D007722 ORTHO05D009730 7.3e-12 74.3 50 64.0
Dinv30597 Davidia involucrata HOM05D007722 ORTHO05D009730 9.5e-12 73.9 75 50.7
CDE06G0954 Ceratophyllum demersum HOM05D007722 ORTHO05D009730 1.2e-11 73.6 67 56.7
Eucgr.F03868 Eucalyptus grandis HOM05D007722 ORTHO05D009730 2.1e-11 72.8 114 43.9
Eucgr.L02714 Eucalyptus grandis HOM05D007722 ORTHO05D009730 2.1e-11 72.8 114 43.9
Sopen03g035570 Solanum pennellii HOM05D007722 ORTHO05D009730 2.1e-11 72.8 48 66.7
SGA_v2.0_scaffold37G14773 Striga asiatica HOM05D007722 ORTHO05D009730 2.1e-11 72.8 135 39.3
HPP92_000666 Vanilla planifolia HOM05D007722 ORTHO05D009730 2.8e-11 72.4 125 35.2
Migut.D01071 Erythranthe guttata HOM05D007722 ORTHO05D009730 3.6e-11 72.0 64 53.1
Oeu045155.1 Olea europaea HOM05D007722 ORTHO05D009730 3.6e-11 72.0 103 45.6
PGSC0003DMG401000617 Solanum tuberosum HOM05D007722 ORTHO05D009730 3.6e-11 72.0 48 64.6
unitig_0.g1117 Utricularia gibba HOM05D007722 ORTHO05D009730 3.6e-11 72.0 64 56.2
Solyc03g116660.3 Solanum lycopersicum HOM05D007722 ORTHO05D009730 4.7e-11 71.6 48 64.6
Nitab4.5_0007793g0010 Nicotiana tabacum HOM05D007722 ORTHO05D009730 1.1e-10 70.5 48 62.5
Nitab4.5_0011590g0030 Nicotiana tabacum HOM05D007722 ORTHO05D009730 1.1e-10 70.5 48 62.5
VMungo0331G1522 Vigna mungo HOM05D007722 ORTHO05D009730 1.1e-10 70.5 66 54.5
Lalb_Chr04g0262381 Lupinus albus HOM05D007722 ORTHO05D009730 1.4e-10 70.1 110 43.6
HanXRQChr16g0500401 Helianthus annuus HOM05D007722 ORTHO05D009730 1.8e-10 69.7 46 65.2
Glyma.08G212200 Glycine max HOM05D007722 ORTHO05D009730 2.3e-10 69.3 83 44.6
Lj3g0002989 Lotus japonicus HOM05D007722 ORTHO05D009730 2.3e-10 69.3 67 53.7
CDE07G1717 Ceratophyllum demersum HOM05D007722 ORTHO05D009730 3.1e-10 68.9 100 42.0
CiPaw.01G246700 Carya illinoinensis HOM05D007722 ORTHO05D009730 4.0e-10 68.6 88 44.3
THA.LOC104810506 Tarenaya hassleriana HOM05D007722 ORTHO05D009730 4.0e-10 68.6 124 37.9
BraA01t03884Z Brassica rapa HOM05D007722 ORTHO05D009730 6.8e-10 67.8 62 54.8
Sabra01G0149600 Salix brachista HOM05D007722 ORTHO05D009730 6.8e-10 67.8 34 82.4
PGR102G2260 Punica granatum HOM05D007722 ORTHO05D009730 8.9e-10 67.4 101 43.6
Manes.11G056000 Manihot esculenta HOM05D007722 ORTHO05D009730 1.2e-09 67.0 107 43.0
QL05p029543 Quercus lobata HOM05D007722 ORTHO05D009730 1.2e-09 67.0 49 63.3
Zm00001eb221290 Zea mays HOM05D007722 ORTHO05D009730 1.2e-09 67.0 68 51.5
Peaxi162Scf00332g00773 Petunia axillaris HOM05D007722 ORTHO05D009730 1.5e-09 66.6 43 62.8
Atru.chr1.2985 Acer truncatum HOM05D007722 ORTHO05D009730 2.6e-09 65.9 121 38.8
Medtr4g010270 Medicago truncatula HOM05D007722 ORTHO05D009730 2.6e-09 65.9 54 55.6
Aqoxy7G03685 Aquilegia oxysepala HOM05D007722 ORTHO05D009730 3.4e-09 65.5 66 50.0
ClCG09G002890 Citrullus lanatus HOM05D007722 ORTHO05D009730 3.4e-09 65.5 94 43.6
Thhalv10021781m.g Eutrema salsugineum HOM05D007722 ORTHO05D009730 4.4e-09 65.1 44 63.6
Sp3g14100 Schrenkiella parvula HOM05D007722 ORTHO05D009730 5.8e-09 64.7 44 61.4
CANSAT56G0372 Cannabis sativa HOM05D007722 ORTHO05D009730 1.3e-08 63.5 114 37.7
THA.LOC104818136 Tarenaya hassleriana HOM05D007722 ORTHO05D009730 1.7e-08 63.2 127 34.6
Carub.0003s1552 Capsella rubella HOM05D007722 ORTHO05D009730 2.2e-08 62.8 124 36.3
Manes.04G113466 Manihot esculenta HOM05D007722 ORTHO05D009730 2.9e-08 62.4 116 39.7
BcaC09g48556 Brassica carinata HOM05D007722 ORTHO05D009730 1.1e-07 60.5 45 62.2
A01p38330 Brassica napus HOM05D007722 ORTHO05D009730 1.1e-07 60.5 45 62.2
BcaB04g20904 Brassica carinata HOM05D007722 ORTHO05D009730 1.4e-07 60.1 45 60.0
C01p48660 Brassica napus HOM05D000771 ORTHO05D001963 1.9e-07 59.7 40 62.5
DCAR_025509 Daucus carota HOM05D007722 ORTHO05D009730 3.2e-07 58.9 129 37.2
BolC1t04820H Brassica oleracea HOM05D000771 ORTHO05D001963 5.4e-07 58.2 40 60.0
BcaC05g28932 Brassica carinata HOM05D000020 ORTHO05D000543 9.2e-07 57.4 44 52.3
C05p50590 Brassica napus HOM05D000020 ORTHO05D000543 9.2e-07 57.4 44 52.3
Sed0026756 Sechium edule HOM05D007722 ORTHO05D009730 9.2e-07 57.4 142 38.7
AT1G52550 Arabidopsis thaliana HOM05D007722 ORTHO05D009730 1.6e-06 56.6 129 37.2
BcaB06g25688 Brassica carinata HOM05D000020 ORTHO05D001963 2.7e-06 55.8 42 52.4
Carub.0001s4151 Capsella rubella HOM05D007722 ORTHO05D009730 6.0e-06 54.7 48 56.2
PSO210G0183 Papaver somniferum HOM05D007722 ORTHO05D009730 6.0e-06 54.7 126 34.9
CARHR042660 Cardamine hirsuta HOM05D007722 ORTHO05D009730 7.8e-06 54.3 48 54.2


User provided reference genes

Program Settings