Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.5e-74 282.7 138 100.0
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 3.2e-69 265.0 138 94.2
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 8.8e-51 203.8 105 95.2
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.6e-50 202.2 105 94.3
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 2.6e-50 202.2 105 94.3
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 9.7e-50 200.3 105 92.4
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.8e-49 198.7 105 90.5
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 2.8e-49 198.7 105 92.4
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 3.7e-49 198.4 105 92.4
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.8e-49 198.0 105 91.4
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 4.8e-49 198.0 105 91.4
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 6.3e-49 197.6 105 91.4
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 6.3e-49 197.6 105 91.4
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.4e-48 196.4 105 89.5
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 1.8e-48 196.1 105 90.5
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 1.8e-48 196.1 105 90.5
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 1.8e-48 196.1 105 90.5
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 1.8e-48 196.1 105 90.5
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.8e-48 196.1 105 89.5
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 2.4e-48 195.7 105 90.5
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.4e-48 195.7 105 90.5
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 2.4e-48 195.7 105 92.4
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 4.1e-48 194.9 105 90.5
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 4.1e-48 194.9 105 89.5
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 5.3e-48 194.5 105 88.6
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 5.3e-48 194.5 105 88.6
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 7.0e-48 194.1 105 89.5
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 9.1e-48 193.7 105 88.6
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 9.1e-48 193.7 105 86.7
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 1.2e-47 193.4 105 87.6
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.6e-47 193.0 105 87.6
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.6e-47 193.0 105 87.6
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 1.6e-47 193.0 105 87.6
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 1.6e-47 193.0 105 87.6
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.6e-47 193.0 105 88.6
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.6e-47 193.0 105 87.6
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 2.0e-47 192.6 108 84.3
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 2.0e-47 192.6 105 86.7
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 2.6e-47 192.2 105 86.7
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 3.5e-47 191.8 114 82.5
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 3.5e-47 191.8 105 86.7
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 5.9e-47 191.0 107 89.7
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 5.9e-47 191.0 107 89.7
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 5.9e-47 191.0 105 87.6
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 1.3e-46 189.9 105 85.7
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.3e-46 189.9 107 88.8
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 1.3e-46 189.9 105 85.7
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 1.7e-46 189.5 105 84.8
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 1.7e-46 189.5 105 86.7
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 1.7e-46 189.5 105 86.7
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.7e-46 189.5 105 85.7
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.2e-46 189.1 128 77.3
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 2.9e-46 188.7 105 85.7
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.9e-46 188.7 105 84.8
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 2.9e-46 188.7 108 82.4
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 3.8e-46 188.3 105 84.8
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 3.8e-46 188.3 105 84.8
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 5.0e-46 188.0 105 86.7
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 5.0e-46 188.0 105 86.7
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 6.5e-46 187.6 105 84.8
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 1.1e-45 186.8 106 87.7
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 1.5e-45 186.4 106 85.8
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 3.2e-45 185.3 115 80.9
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 5.5e-45 184.5 106 84.9
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 7.2e-45 184.1 117 78.6
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 2.1e-44 182.6 118 78.0
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 2.1e-44 182.6 118 78.0
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.4e-43 179.9 122 75.4
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 4.0e-43 178.3 141 67.4
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 4.0e-43 178.3 106 83.0
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 5.2e-43 177.9 108 81.5
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.4e-42 174.9 108 78.7
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 4.4e-42 174.9 108 78.7
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 5.7e-42 174.5 105 77.1
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 5.7e-42 174.5 105 77.1
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.3e-41 173.3 144 63.9
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 1.7e-41 172.9 105 75.2
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 1.3e-38 163.3 138 63.0
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 1.7e-38 162.9 105 77.1
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 4.4e-34 148.3 105 73.3
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 4.4e-34 148.3 77 96.1
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 4.4e-34 148.3 82 90.2
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 5.7e-34 147.9 84 88.1
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 7.5e-34 147.5 82 87.8
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 9.8e-34 147.1 79 86.1
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 1.7e-33 146.4 77 96.1
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 2.2e-33 146.0 82 90.2
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 3.7e-33 145.2 94 80.9
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 3.7e-33 145.2 77 94.8
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 4.9e-33 144.8 77 93.5
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 1.1e-32 143.7 81 88.9
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 1.1e-32 143.7 82 84.1
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 1.1e-32 143.7 82 84.1
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.8e-32 142.9 77 90.9
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 2.4e-32 142.5 77 89.6
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.4e-32 142.5 77 92.2
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.4e-32 142.5 77 90.9
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 3.1e-32 142.1 75 96.0
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 4.1e-32 141.7 77 90.9
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 5.4e-32 141.4 77 89.6
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 7.0e-32 141.0 77 89.6
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 7.0e-32 141.0 81 86.4
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 7.0e-32 141.0 77 89.6
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 9.1e-32 140.6 76 92.1
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 9.1e-32 140.6 77 89.6
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 9.1e-32 140.6 106 67.0
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 1.6e-31 139.8 86 80.2
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 2.0e-31 139.4 80 83.8
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 3.5e-31 138.7 80 83.8
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 3.5e-31 138.7 80 83.8
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 3.5e-31 138.7 80 83.8
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 3.5e-31 138.7 77 88.3
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 5.9e-31 137.9 77 85.7
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 5.9e-31 137.9 77 85.7
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 1.0e-30 137.1 77 85.7
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.0e-30 137.1 77 85.7
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 1.3e-30 136.7 77 85.7
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 1.3e-30 136.7 77 85.7
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.3e-30 136.7 77 85.7
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.9e-30 135.6 77 84.4
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 5.0e-30 134.8 77 83.1
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.5e-29 133.3 77 83.1
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 4.2e-29 131.7 143 52.4
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 7.2e-29 131.0 73 84.9
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 7.2e-29 131.0 75 85.3
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 9.5e-29 130.6 113 54.0
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 1.0e-27 127.1 74 81.1
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.0e-27 127.1 76 80.3
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 2.3e-27 125.9 70 87.1
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 6.8e-27 124.4 105 61.0
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 4.4e-26 121.7 115 60.9
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 1.7e-22 109.8 97 48.5
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 3.9e-22 108.6 71 77.5
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 5.0e-22 108.2 103 48.5
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 2.1e-20 102.8 70 62.9
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 3.1e-19 99.0 57 82.5
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 3.1e-19 99.0 50 96.0
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 4.0e-19 98.6 75 58.7
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 4.0e-19 98.6 49 91.8
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 5.2e-19 98.2 59 79.7
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 5.2e-19 98.2 56 83.9
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 4.4e-18 95.1 49 89.8
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 2.3e-14 82.8 60 68.3
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 1.5e-13 80.1 45 84.4
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 1.2e-10 70.5 42 76.2
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.4e-08 63.5 29 93.1
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 2.4e-08 62.8 42 69.0
Haze_26443 Corylus avellana HOM05D000849 ORTHO05D005360 5.4e-08 61.6 102 34.3
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 7.1e-08 61.2 29 89.7
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 3.9e-06 55.5 28 82.1
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 6.6e-06 54.7 29 89.7
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 8.6e-06 54.3 25 92.0
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 8.6e-06 54.3 25 92.0
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 8.6e-06 54.3 25 92.0
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 8.6e-06 54.3 25 92.0
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 8.6e-06 54.3 25 92.0
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 8.6e-06 54.3 25 92.0


User provided reference genes

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